PyPI - partis-bcr - Versions diffs - 1.0.11__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev3__cp312-cp312-manylinux1_x86_64.whl - Mend

partis-bcr 1.0.11__cp312-cp312-manylinux1_x86_64.whl → 1.0.11.post1.dev3__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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test/paired/new-results/test/simu/igh+igk/igh.yaml ADDED Viewed

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test/paired/new-results/test/simu/igh+igk/igk.yaml ADDED Viewed

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+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igk", "functionalities": {}, "seqs": {"v": {"IGKV1-12*01": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTCC", "IGKV1-27*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATTATTTAGCCTGGTATCAGCAGAAACCAGGGAAAGTTCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAATCAGGGGTCCCATCTCGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATGTTGCAACTTATTACTGTCAAAAGTATAACAGTGCCCCTCC", "IGKV1-33*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTAGCAACTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTACGATGCATCCAATTTGGAAACAGGGGTCCCATCAAGGTTCAGTGGAAGTGGATCTGGGACAGATTTTACTTTCACCATCAGCAGCCTGCAGCCTGAAGATATTGCAACATATTACTGTCAACAGTATGATAATCTCCCTCC", "IGKV1-5*01": "GACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGAGTATTAGTAGCTGGTTGGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACTTATTACTGCCAACAGTATAATAGTTATTCTCC", "IGKV1-8*03": "GCCATCCGGATGACCCAGTCTCCATCCTCACTCTCTGCATCTACAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCTGCCTGCAGTCTGAAGATTTTGCAACTTATTACTGTCAACAGTATTATAGTTACCCTCC", "IGKV1-9*01": "GACATCCAGTTGACCCAGTCTCCATCCTTCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCCAGTCAGGGCATTAGCAGTTATTTAGCCTGGTATCAGCAAAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCACTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACAATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGCTTAATAGTTACCCTCC", "IGKV1D-13*02": "GCCATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGGGCATTAGCAGTGCTTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCTCCTAAGCTCCTGATCTATGATGCCTCCAGTTTGGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGTTTAATAGTTACCCTCA", "IGKV1D-39*01": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCC", "IGKV2-24*01": "GATATTGTGATGACCCAGACTCCACTCTCCTCACCTGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTACACAGTGATGGAAACACCTACTTGAGTTGGCTTCAGCAGAGGCCAGGCCAGCCTCCAAGACTCCTAATTTATAAGATTTCTAACCGGTTCTCTGGGGTCCCAGACAGATTCAGTGGCAGTGGGGCAGGGACAGATTTCACACTGAAAATCAGCAGGGTGGAAGCTGAGGATGTCGGGGTTTATTACTGCATGCAAGCTACACAATTTCCTCA", "IGKV2-30*01": "GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTATACAGTGATGGAAACACCTACTTGAATTGGTTTCAGCAGAGGCCAGGCCAATCTCCAAGGCGCCTAATTTATAAGGTTTCTAACCGGGACTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGGTCAGGCACTGATTTCACACTGAAAATCAGCAGGGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTACACACTGGCCTCC", "IGKV2D-28*01": "GATATTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCTCC", "IGKV3-11*01": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCC", "IGKV3-15*01": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGCCTCC", "IGKV3-20*01": "GAAATTGTGTTGACGCAGTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAGCTACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACCTCC", "IGKV4-1*02": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCCTCC", "IGKV6-21*01": "GAAATTGTGCTGACTCAGTCTCCAGACTTTCAGTCTGTGACTCCAAAGGAGAAAGTCACCATCACCTGCCGGGCCAGTCAGAGCATTGGTAGTAGCTTACACTGGTACCAGCAGAAACCAGATCAGTCTCCAAAGCTCCTCATCAAGTATGCTTCCCAGTCCTTCTCAGGGGTCCCCTCGAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACCCTCACCATCAATAGCCTGGAAGCTGAAGATGCTGCAACGTATTACTGTCATCAGAGTAGTAGTTTACCTCA"}, "d": {"IGKDx-x*x": "A"}, "j": {"IGKJ1*01": "GTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "IGKJ2*01": "TGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*03": "TGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ2*04": "TGTGCAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "IGKJ3*01": "ATTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "IGKJ4*01": "GCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "IGKJ5*01": "GATCACCTTCGGCCAAGGGACACGACTGGAGATTAAAC"}}, "cyst-positions": {"IGKV1-5*01": 261, "IGKV1-9*01": 261, "IGKV3-20*01": 264, "IGKV2-24*01": 276, "IGKV1-33*01": 261, "IGKV1-12*01": 261, "IGKV2D-28*01": 276, "IGKV1-27*01": 261, "IGKV6-21*01": 261, "IGKV3-11*01": 261, "IGKV1D-39*01": 261, "IGKV1D-13*02": 261, "IGKV3-15*01": 261, "IGKV4-1*02": 279, "IGKV2-30*01": 276, "IGKV1-8*03": 261}, "phen-positions": {"IGKJ3*01": 7, "IGKJ5*01": 7, "IGKJ4*01": 7, "IGKJ2*04": 8, "IGKJ2*03": 8, "IGKJ2*01": 8, "IGKJ1*01": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 7, "n_procs": 1, "partition": [["6728f9fb1f-igk", "84b9b0a5db-igk", "25beda54e8-igk", "a385b6b9c0-igk", "762f4ed65b-igk", "293677779b-igk", "539dc7162b-igk", "7fc27267b4-igk", "c074eb0544-igk", "5414307e18-igk", "1dc717a47d-igk", "fa79e38212-igk"], ["3590a73b2b-igk", "486333046a-igk"], ["5b83db58bc-igk", "70cc01a590-igk", "8c82b5df7c-igk"], ["dde37df0f3-igk", "4e698cd55b-igk"], ["a32678cdd4-igk"], ["4879a2a0d7-igk", "7777388536-igk", "69e29aff11-igk", "c449e7d496-igk", "b8dd0bbe5b-igk", "831950bd07-igk", "1df0b0d259-igk", "2bbe5f9b28-igk", "9f7c316b7a-igk"], ["2b1422c0aa-igk", "5cb34a1703-igk", "053a8abb6c-igk", "39fc72ec75-igk", "d3edbb8447-igk", "031d868683-igk", "1b28490bf6-igk"]]}], "events": [{"qr_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCA.......AGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCACAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGC....CTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTTGTGGTAATATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGAAGTTTTAGTCGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTG....................................GTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "gl_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGC..CAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGG.........TATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGA.........CGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "", "", "", "", "", "", "", "", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "reco_id": "8a9d39afe0", "tree": "[&R] ((((5414307e18-igk:0.008502932147128023,1dc717a47d-igk:0.008502932147128023)ajt:0.008122880405858672,(((c074eb0544-igk:0.014991685301204651,(fa79e38212-igk:0.014055471951124665,(84b9b0a5db-igk:0.013541867892427785,293677779b-igk:0.013541867892427785)oux:0.00051360406210676)hxy:0.0009362133446551766)ijo:0.000864750165343496,25beda54e8-igk:0.015856435462673284)lot:0.00011011364305165203,(6728f9fb1f-igk:0.015715928326901298,((539dc7162b-igk:0.0037746814180675773,7fc27267b4-igk:0.0037746814180675773)dmy:0.009194508628349793,762f4ed65b-igk:0.012969190047967318)jmo:0.0027467382742841456)flx:0.000250620783163485)lmr:0.0006592634473392585)gvw:0.000310518390578505,a385b6b9c0-igk:0.016936330943797692)jwy:0.0018146457098906887)bkq:0.0;", "unique_ids": ["6728f9fb1f-igk", "84b9b0a5db-igk", "25beda54e8-igk", "a385b6b9c0-igk", "762f4ed65b-igk", "293677779b-igk", "539dc7162b-igk", "7fc27267b4-igk", "c074eb0544-igk", "5414307e18-igk", "1dc717a47d-igk", "fa79e38212-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.018808777429467086, 0.03761755485893417, 0.03134796238244514, 0.018808777429467086, 0.01567398119122257, 0.02821316614420063, 0.018808777429467086, 0.012539184952978056, 0.034482758620689655, 0.02821316614420063, 0.02821316614420063, 0.03134796238244514], "n_mutations": [6, 12, 10, 6, 5, 9, 6, 4, 11, 9, 9, 10], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGTCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAAGCAGCAACTTAACCTGGTACCAGCAGAAACCTGGCCAGGCCCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCACAGGTTCAGTGGCAGTGGCTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTGTTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACTCTGTCTGTGTCTCCAGGGGGAAGGGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACATGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTAGTATCCCAACCAAGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTTTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAAGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACGAGCAGAAACCTCGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAAAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACGACCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCACCAGTATAATAACTGGTGGACGTTCGGCCAAGGGGCCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGACCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTATCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCTTCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCCCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTAGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCTGCCACCCTGTCTCTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCATCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGAGGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGGAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCAGCAACTTAGCCTGTTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCTTCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGCCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGCTTATTACTGTCAGCAGTATAATAACTGGTGGACATTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCTGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCGGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGTCTCCTCATCTATGGTGGATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTACTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCGGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGTCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTACTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCAGCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGAAGGGCCAGTCAAAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGAGCCACTGGTACCCCAGCCAGGTTCAGTGCGAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAATTTATTACTGTCAGCGGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC", "GAAATAGTGATGACGCAGTCTCCACCCACCCTGTCTGTGTCTCCACGGGAAAGAGCCACCCTCTCCTGCAGGGCTAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATATTTGGTGCATCCACCAGAGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCGCTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTCCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCTGTCTGTGTCTCCACGGGAAAGAGTCACCCTCTCCTGCAGAGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAATCTGGCCAGGCTCCCAGGCTCCTCATCTTTGGTGCATCCACCAGAGCCACTGGTTGTGGTAATATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTGTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGTAGTTTATTACTGTTAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGAAGTTTTAGTCGCAGTCTCCAGCCACCCTGTCTGTGTCTACAGGGGGAAGAGCCACCCTCTCCTCCAGGGTCAGTCAGAGTATTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGGTGCCAGTGGATCTGGGACAGAGTTCACTCTCACCATTAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAGC"], "has_shm_indels": [true, false, false, false, false, false, false, false, false, false, true, true], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [false, true, true, true, true, true, true, true, true, true, false, true], "stops": [true, false, false, true, false, false, false, false, true, false, true, true], "paired-uids": [["6728f9fb1f-igh"], [], ["25beda54e8-igh", "5d404a8547-igh", "5d404a8547-igl"], ["a385b6b9c0-igh"], [], ["293677779b-igh"], ["11f41b5f10-igh", "539dc7162b-igh"], ["45de550151-igl", "7fc27267b4-igh"], ["6d2eb72d4b-igh", "c074eb0544-igh"], ["5414307e18-igh"], ["1dc717a47d-igh"], ["fa79e38212-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 288}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "ca482b4daf", "tree": "[&R] (((1bb77dbdd8-igk:-0.0,486333046a-igk:-0.0)jux:0.0,3590a73b2b-igk:-0.0)egh:-0.0)hmv:0.0;", "unique_ids": ["3590a73b2b-igk", "486333046a-igk"], "invalid": false, "v_gene": "IGKV3-11*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 36, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "naive_seq": "GAAATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCTACTTAGCCTGGTACCAACAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGATGCATCCAACAGGGCCACTGGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGCGTAGCAACTGGCCTCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["3590a73b2b-igh"], ["486333046a-igh"]], "loci": ["igk", "igk"], "codon_positions": {"v": 261, "j": 294}}, {"qr_gap_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCAGCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "gl_gap_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCC..CAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["", "", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "reco_id": "8ff5ec4520", "tree": "[&R] ((70cc01a590-igk:-0.0,(5b83db58bc-igk:-0.0,8c82b5df7c-igk:-0.0)euv:0.0)doz:-0.0)alx:0.0;", "unique_ids": ["5b83db58bc-igk", "70cc01a590-igk", "8c82b5df7c-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCAGCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "has_shm_indels": [false, false, true], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[], [], []], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, false], "stops": [false, false, false], "paired-uids": [["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igh"], ["fa02aeb02e-igh"], ["8c82b5df7c-igh"]], "loci": ["igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "6564755f20", "tree": "[&R] ((4e698cd55b-igk:0.001172468977992632,dde37df0f3-igk:0.001172468977992632)dku:0.0014777104579907138)mrx:0.0;", "unique_ids": ["dde37df0f3-igk", "4e698cd55b-igk"], "invalid": false, "v_gene": "IGKV1-12*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ3*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.003105590062111801], "n_mutations": [0, 1], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACGATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC"], "has_shm_indels": [false, false], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCTTCCGTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGTCGGGCGAGTCAGGGTATTAGCAGCTGGTTAGCCTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTACTATTGTCAACAGGCTAACAGTTTCCCTTTCACTTTCGGCCCTGGGACCAAAGTGGATATCAAAC", "duplicates": [[], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["dde37df0f3-igh"], ["4e698cd55b-igh"]], "loci": ["igk", "igk"], "codon_positions": {"v": 261, "j": 291}}, {"has_shm_indels": [true], "qr_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAA..................GGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGAC....TTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "gl_gap_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "indel_reversed_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "reco_id": "b2144fab8e", "tree": "[&R] ((a32678cdd4-igk:-0.0,6daaa9b771-igk:-0.0)ads:-0.0)aeh:0.0;", "unique_ids": ["a32678cdd4-igk"], "invalid": false, "v_gene": "IGKV3-15*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ1*01", "cdr3_length": 30, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC"], "naive_seq": "GAAATAGTGATGACGCAGTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGCCACCCTCTCCTGCAGGGCCAGTCAGAGTGTTAGCAGCAACTTAGCCTGGTACCAGCAGAAACCTGGCCAGGCTCCCAGGCTCCTCATCTATGGTGCATCCACCAGGGCCACTGGTATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTGCAGTCTGAAGATTTTGCAGTTTATTACTGTCAGCAGTATAATAACTGGTGGACGTTCGGCCAAGGGACCAAGGTGGAAATCAAAC", "duplicates": [[]], "v_3p_del": 6, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [false], "stops": [false], "paired-uids": [["a32678cdd4-igh", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]], "loci": ["igk"], "codon_positions": {"v": 261, "j": 288}}, {"qr_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAA..AGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "gl_gap_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "", "", "", "", "", "", "", ""], "reco_id": "182e588062", "tree": "[&R] ((((c449e7d496-igk:-0.0,2bbe5f9b28-igk:-0.0)doz:-0.0,((1df0b0d259-igk:-0.0,4879a2a0d7-igk:-0.0)kow:-0.0,b8dd0bbe5b-igk:-0.0)juy:-0.0)lpx:-0.0,(7777388536-igk:-0.0,((69e29aff11-igk:-0.0,831950bd07-igk:-0.0)cqx:-0.0,9f7c316b7a-igk:-0.0)jsy:-0.0)kuz:-0.0)aej:-0.0)bwx:0.0;", "unique_ids": ["4879a2a0d7-igk", "7777388536-igk", "69e29aff11-igk", "c449e7d496-igk", "b8dd0bbe5b-igk", "831950bd07-igk", "1df0b0d259-igk", "2bbe5f9b28-igk", "9f7c316b7a-igk"], "invalid": false, "v_gene": "IGKV4-1*02", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ4*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0, 0, 0, 0], "input_seqs": ["GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAAAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC"], "has_shm_indels": [true, false, false, false, false, false, false, false, false], "naive_seq": "GACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAGTATTATAGTACTCGGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 4, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "GG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [false, true, true, true, true, true, true, true, true], "stops": [true, false, false, false, false, false, false, false, false], "paired-uids": [["4879a2a0d7-igh"], ["7777388536-igh"], ["1bd9242383-igl", "69e29aff11-igh"], ["c449e7d496-igh"], ["b8dd0bbe5b-igh"], ["831950bd07-igh"], ["1df0b0d259-igh"], ["2bbe5f9b28-igh"], ["9f7c316b7a-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 279, "j": 309}}, {"has_shm_indels": [false, false, false, false, true, true, false], "qr_gap_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCT...TCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAG...ACCAAGCTGGAGATCAAAC", ""], "gl_gap_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAA.GCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATC...TGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", ""], "indel_reversed_seqs": ["", "", "", "", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", ""], "reco_id": "d217d13f25", "tree": "[&R] ((053a8abb6c-igk:0.002579919728288003,(((5cb34a1703-igk:0.00022332081592492988,f5dedfcd67-igk:0.00022332081592492988)uvy:0.0007244571733808729,(2b1422c0aa-igk:0.0005927327741661682,39fc72ec75-igk:0.0005927327741661682)lqu:0.00035504521513963453)efv:0.0013234461181477395,((1b28490bf6-igk:0.0018482221322063217,d3edbb8447-igk:0.0018482221322063217)hlv:2.8527657173184614e-05,031d868683-igk:0.0018767497892095062)gpw:0.0003944743181440362)gly:0.00030869562073446047)pqv:7.025970777784327e-05)cuy:0.0;", "unique_ids": ["2b1422c0aa-igk", "5cb34a1703-igk", "053a8abb6c-igk", "39fc72ec75-igk", "d3edbb8447-igk", "031d868683-igk", "1b28490bf6-igk"], "invalid": false, "v_gene": "IGKV1D-39*01", "d_gene": "IGKDx-x*x", "j_gene": "IGKJ2*03", "cdr3_length": 36, "mut_freqs": [0.003076923076923077, 0.003076923076923077, 0.006153846153846154, 0.003076923076923077, 0.006153846153846154, 0.006153846153846154, 0.003076923076923077], "n_mutations": [1, 1, 2, 1, 2, 2, 1], "input_seqs": ["GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAACCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTTCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGTCCCTAACGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCGCTTGGGACAGATTTCACTCTCACCATCACCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGACCAAGCTGGAGATCAAAC", "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAGGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC"], "naive_seq": "GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGCATTAGCAGCTATTTAAATTGGTATCAGCAGAAACCAGGGAAAGCCCCTAAGCTCCTGATCTATGCTGCATCCAGTTTGCAAAGTGGGGTCCCATCAAGGTTCAGTGGCAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTACTGTCAACAGAGTTACAGTACCCCTCCGTACAGTTTTGGCCAGGGGACCAAGCTGGAGATCAAAC", "duplicates": [[], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 1, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, false, true, true], "stops": [false, false, false, false, true, false, false], "paired-uids": [[], ["5cb34a1703-igh"], ["053a8abb6c-igh"], [], ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igh"], ["031d868683-igh"], ["1b28490bf6-igh"]], "loci": ["igk", "igk", "igk", "igk", "igk", "igk", "igk"], "codon_positions": {"v": 261, "j": 294}}]}

test/paired/new-results/test/simu/igh+igl/igh.yaml ADDED Viewed

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test/paired/new-results/test/simu/igh+igl/igl.yaml ADDED Viewed

@@ -0,0 +1 @@

+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igl", "functionalities": {}, "seqs": {"v": {"IGLV1-40*01": "CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC", "IGLV1-51*02": "CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATCTATGAAAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG", "IGLV2-14*04": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTC", "IGLV2-23*02": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC", "IGLV3-1*01": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCA", "IGLV3-19*01": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT", "IGLV3-27*01": "TCCTATGAGCTGACACAGCCATCCTCAGTGTCAGTGTCTCCGGGACAGACAGCCAGGATCACCTGCTCAGGAGATGTACTGGCAAAAAAATATGCTCGGTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATTTATAAAGACAGTGAGCGGCCCTCAGGGATCCCTGAGCGATTCTCCGGCTCCAGCTCAGGGACCACAGTCACCTTGACCATCAGCGGGGCCCAGGTTGAGGATGAGGCTGACTATTACTGTTACTCTGCGGCTGACAACAATCT", "IGLV4-60*03": "CAGCCTGTGCTGACTCAATCATCCTCTGCCTCTGCTTCCCTGGGATCCTCGGTCAAGCTCACCTGCACTCTGAGCAGTGGGCACAGTAGCTACATCATCGCATGGCATCAGCAGCAGCCAGGGAAGGCCCCTCGGTACTTGATGAAGCTTGAAGGTAGTGGAAGCTACAACAAGGGGAGCGGAGTTCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGACCGCTACCTCACCATCTCCAACCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGAGACCTGGGACAGTAACACTCA", "IGLV7-46*04": "CAGGCTGTGGTGACTCAGGAGCCCTCACTGACTGTGTCCCCAGGAGGGACAGTCACTCTCACCTGTGGCTCCAGCACTGGAGCTGTCACCAGTGGTCATTATCCCTACTGGTTCCAGCAGAAGCCTGGCCAAGCCCCCAGGACACTGATTTATGATACAAGCAACAAACACTCCTGGACCCCTGCCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGCCCTGACCCTTTCGGGTGCGCAGCCTGAGGATGAGGCTGAGTATTACTGCTTGCTCTCCTATAGTGGTGCTCGG", "IGLV8-61*01": "CAGACTGTGGTGACCCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAGTCACACTCACTTGTGGCTTGAGCTCTGGCTCAGTCTCTACTAGTTACTACCCCAGCTGGTACCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGCACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGGGAACAAAGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGATTATTACTGTGTGCTGTATATGGGTAGTGGCATTTC"}, "d": {"IGLDx-x*x": "A"}, "j": {"IGLJ1*01": "TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG", "IGLJ2*01": "TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "IGLJ3*02": "TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"}}, "cyst-positions": {"IGLV8-61*01": 267, "IGLV2-14*04": 267, "IGLV4-60*03": 273, "IGLV2-23*02": 267, "IGLV1-40*01": 267, "IGLV3-1*01": 258, "IGLV1-51*02": 264, "IGLV7-46*04": 267, "IGLV3-27*01": 258, "IGLV3-19*01": 258}, "phen-positions": {"IGLJ1*01": 7, "IGLJ2*01": 7, "IGLJ3*02": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 3, "n_procs": 1, "partition": [["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false, true, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCC........AAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "reco_id": "e707c96016", "tree": "[&R] (((((3a41497d91-igl:0.007385162951159356,d068457847-igl:0.007385162951159356)bkm:0.005605303670959556,45eb339259-igl:0.0129904666254787)iqr:0.002648926846099352,(552c9f1e08-igl:0.01466725887272979,de762b8ce4-igl:0.01466725887272979)gis:0.0009721345962724225)ahz:0.004634256160450372,((c8a03324cc-igl:0.0025550433855388802,922ea4413e-igl:0.0025550433855388802)mos:0.016905476324571775,((8c03b80be0-igl:0.011287736113761764,((f4ebbe68a7-igl:0.0015841087168501067,383777b7c5-igl:0.0015841087168501067)fnr:0.0002666556744881951,((0bfaf8b4b1-igl:0.0014312958996758355,a55e058517-igl:0.0014312958996758355)hkt:0.0003340799418143904,d8138c32a6-igl:0.001765375841378233)beo:8.538855010565957e-05)adh:0.009436971722983427)efn:0.00737350252108383,b68b8d0fe2-igl:0.01866123863932531)clt:0.0007992810697774085)ags:0.0008131299216937824)buv:0.009406482169521176)alp:0.0;", "unique_ids": ["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], "invalid": false, "v_gene": "IGLV3-19*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 39, "mut_freqs": [0.04, 0.021538461538461538, 0.04, 0.04, 0.03076923076923077, 0.021538461538461538, 0.03076923076923077, 0.018461538461538463, 0.021538461538461538, 0.036923076923076927, 0.018461538461538463, 0.018461538461538463], "n_mutations": [13, 7, 13, 13, 10, 7, 10, 6, 7, 12, 6, 6], "input_seqs": ["TCTTCTGAGCTGACTCAGGACCCTGCTCTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAAAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTTCCAGCAGAAGCCAGGACAGGCTCCTGTACTTGTCATCTATGGTAAAAGCAACCGGCCCTCAGTGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGCGGCTCAGGCGAAACATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCTAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCGTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCAATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGCGTCTGTGGCCTTGGGACAGATAGTCAGGATCGCATGCCAAGAAGACAGCCTCAGAAGCTATTATCCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTCGGGCTCAGGCAGAAGATGAGGCTGCCTCTTACTGTAACTCCCGGGACAACAGTGATAACGATGTGGTATTCGTCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCGGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCATGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGAAAGGCCCCTGTACTTGTCATCTATGGTAAAAACTATCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTAACCATCACTGGGGCTGAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAACAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTTACTCAGGACCCTGCTGTGTCTGTGGCCTTAGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAATCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGCTAAGCATCTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTTCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, false, true, true], "stops": [false, true, false, false, false, false, false, false, false, true, false, false], "paired-uids": [["b68b8d0fe2-igh"], ["de762b8ce4-igh", "ebb52c305d-igh"], ["552c9f1e08-igh"], ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igh"], ["d068457847-igh"], ["0bfaf8b4b1-igh"], ["8c03b80be0-igh"], ["f4ebbe68a7-igh"], ["652adbce26-igh", "652adbce26-igl"], ["922ea4413e-igh"], ["a55e058517-igh"], ["383777b7c5-igh"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 294}}, {"qr_gap_seqs": ["", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "gl_gap_seqs": ["", "CAGTCTGCCCTG...ACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "indel_reversed_seqs": ["", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "reco_id": "dd76478982", "tree": "[&R] (((fd0c4f0f17-igl:-0.0,5d404a8547-igl:-0.0)bqw:-0.0,898ab41392-igl:-0.0)fpy:-0.0)cgn:0.0;", "unique_ids": ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], "invalid": false, "v_gene": "IGLV2-14*04", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ3*02", "cdr3_length": 39, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "has_shm_indels": [false, true, false], "naive_seq": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], []], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["898ab41392-igh", "c8a03324cc-igh", "c8a03324cc-igl"], ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igh"], ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igh"]], "loci": ["igl", "igl", "igl"], "codon_positions": {"v": 267, "j": 303}}, {"has_shm_indels": [false, false, true, false, false, false], "qr_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGC.GGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGG.....CCAAGCTGACCGTCCTAG", "", "", ""], "gl_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "indel_reversed_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "reco_id": "da8c9d16ae", "tree": "[&R] (((((fa02aeb02e-igl:-0.0,a9c9c3afba-igl:-0.0)efs:-0.0,(((652adbce26-igl:-0.0,45de550151-igl:-0.0)giy:-0.0,1bd9242383-igl:-0.0)axy:-0.0,(11f41b5f10-igl:-0.0,6d2eb72d4b-igl:-0.0)cfj:-0.0)hns:-0.0)hjv:-0.0,(19e0f0b170-igl:-0.0,504e3941e6-igl:-0.0)emn:-0.0)iwz:-0.0,ebb52c305d-igl:-0.0)eju:-0.0)bgr:0.0;", "unique_ids": ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"], "invalid": false, "v_gene": "IGLV3-1*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0], "input_seqs": ["TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGCCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, false, true, true, true], "stops": [false, false, true, false, false, false], "paired-uids": [[], ["69e29aff11-igh", "69e29aff11-igk"], ["7fc27267b4-igh", "7fc27267b4-igk"], ["652adbce26-igh", "d8138c32a6-igl"], ["504e3941e6-igh", "5b83db58bc-igh", "5b83db58bc-igk"], ["19e0f0b170-igh", "d3edbb8447-igh", "d3edbb8447-igk"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 288}}]}

test/paired/new-results/test/simu/igh.yaml ADDED Viewed

@@ -0,0 +1 @@

+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-18*01": "CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-46*03": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCTAGAGA", "IGHV1-69*04": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-8*01": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG", "IGHV2-5*02": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGAC", "IGHV2-70*01": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-11*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV3-15*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA", "IGHV3-20*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGTGTGGTACGGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGGCATGAGCTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGAGTGGGTCTCTGGTATTAATTGGAATGGTGGTAGCACAGGTTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCCTTGTATCACTGTGCGAGAGA", "IGHV3-21*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-23*01": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA", "IGHV3-30*04": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-33*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-48*02": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGACGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-66*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCAGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-7*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-74*01": "GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTAGTTCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACTGGATGCACTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGTGTGGGTCTCACGTATTAATAGTGATGGGAGTAGCACAAGCTACGCGGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACACGCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCAAGAGA", "IGHV3-9*01": "GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA", "IGHV4-31*03": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-39*01": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA", "IGHV4-4*02": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-59*11": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTCACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-20*01": "GGTATAACTGGAACGAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD1-7*01": "GGTATAACTGGAACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD3-10*01": "GTATTACTATGGTTCGGGGAGTTATTATAAC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-22*01": "GTATTACTATGATAGTAGTGGTTATTACTAC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD4-17*01": "TGACTACGGTGACTAC", "IGHD5-24*01": "GTAGAGATGGCTACAATTAC", "IGHD6-13*01": "GGGTATAGCAGCAGCTGGTAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ1*01": "GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "IGHJ2*01": "CTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "IGHJ3*02": "TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "IGHJ4*02": "ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ5*02": "ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ6*02": "ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"}}, "cyst-positions": {"IGHV1-69*04": 285, "IGHV3-74*01": 285, "IGHV2-5*02": 288, "IGHV4-59*11": 282, "IGHV3-9*01": 285, "IGHV1-2*02": 285, "IGHV3-33*01": 285, "IGHV3-21*01": 285, "IGHV2-70*01": 288, "IGHV1-18*01": 285, "IGHV4-31*03": 288, "IGHV3-7*01": 285, "IGHV3-11*01": 285, "IGHV3-30*04": 285, "IGHV3-66*01": 282, "IGHV1-8*01": 285, "IGHV4-39*01": 288, "IGHV1-46*03": 285, "IGHV3-23*01": 285, "IGHV3-15*01": 291, "IGHV3-20*01": 285, "IGHV3-48*02": 285, "IGHV4-4*02": 285}, "tryp-positions": {"IGHJ4*02": 14, "IGHJ2*01": 19, "IGHJ3*02": 16, "IGHJ6*02": 29, "IGHJ5*02": 17, "IGHJ1*01": 18}}, "partitions": [{"logprob": 0.0, "n_clusters": 10, "n_procs": 1, "partition": [["6728f9fb1f-igh", "25beda54e8-igh", "a385b6b9c0-igh", "293677779b-igh", "539dc7162b-igh", "7fc27267b4-igh", "c074eb0544-igh", "5414307e18-igh", "1dc717a47d-igh", "fa79e38212-igh"], ["3590a73b2b-igh", "486333046a-igh", "1bb77dbdd8-igh"], ["5b83db58bc-igh", "8c82b5df7c-igh"], ["dde37df0f3-igh", "4e698cd55b-igh"], ["6daaa9b771-igh", "a32678cdd4-igh"], ["4879a2a0d7-igh", "7777388536-igh", "69e29aff11-igh", "c449e7d496-igh", "b8dd0bbe5b-igh", "831950bd07-igh", "1df0b0d259-igh", "2bbe5f9b28-igh", "9f7c316b7a-igh"], ["f5dedfcd67-igh", "5cb34a1703-igh", "053a8abb6c-igh", "d3edbb8447-igh", "031d868683-igh", "1b28490bf6-igh"], ["b68b8d0fe2-igh", "de762b8ce4-igh", "552c9f1e08-igh", "c8a03324cc-igh", "d068457847-igh", "0bfaf8b4b1-igh", "8c03b80be0-igh", "f4ebbe68a7-igh", "922ea4413e-igh", "a55e058517-igh", "383777b7c5-igh", "3a41497d91-igh"], ["898ab41392-igh", "5d404a8547-igh", "fd0c4f0f17-igh"], ["ebb52c305d-igh", "652adbce26-igh", "6d2eb72d4b-igh", "11f41b5f10-igh", "504e3941e6-igh", "19e0f0b170-igh", "fa02aeb02e-igh"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", ""], "reco_id": "8a9d39afe0", "tree": "[&R] ((((5414307e18-igh:0.051727505643716934,1dc717a47d-igh:0.051727505643716934)acj:0.04941546454409991,(((c074eb0544-igh:0.09120177282478034,(fa79e38212-igh:0.08550632794623421,(84b9b0a5db-igh:0.08238182261264146,293677779b-igh:0.08238182261264146)btu:0.0031245053543367245)abi:0.005695444845544361)qtz:0.00526069928398987,25beda54e8-igh:0.09646247208519754)ltu:0.0006698752846485348,(6728f9fb1f-igh:0.09560769828095368,((539dc7162b-igh:0.0229632379722416,7fc27267b4-igh:0.0229632379722416)ioz:0.05593470449188649,762f4ed65b-igh:0.07889794247355719)ahm:0.016709755779109266)fop:0.001524649115293797)lnz:0.004010622818442246)oxy:0.0018890356318499828,a385b6b9c0-igh:0.10303200582108119)dhn:0.011039379660511833)akt:0.0;", "unique_ids": ["6728f9fb1f-igh", "25beda54e8-igh", "a385b6b9c0-igh", "293677779b-igh", "539dc7162b-igh", "7fc27267b4-igh", "c074eb0544-igh", "5414307e18-igh", "1dc717a47d-igh", "fa79e38212-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.10649350649350649, 0.09090909090909091, 0.10649350649350649, 0.1012987012987013, 0.09350649350649351, 0.09090909090909091, 0.09350649350649351, 0.08831168831168831, 0.0987012987012987, 0.11168831168831168], "n_mutations": [41, 35, 41, 39, 36, 35, 36, 34, 38, 43], "input_seqs": ["CAGGCGGAGCTGGTGCTGTCTGGGGAAGGCGTGGTCCAGCCCGGGAGACCCCTGAGGCTCTCCTGTACAGCGCCTGGATTCACCCTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTAGAGTATGTGGCAATTACTTGGTATAATGGAAATAATAAATACTATGCAGACTCCGTAAAGAGTCGATTCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCTTACGTTCGCGTAAATTCATGTTGTGCCGTACTACTACTACGGTGTGGACGTCTGGGGCCTAGGGACCACGGTCATTGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGATCCAGCCTAGGAAGTCCCTGAGACTCTCCTGTGCACCGCCCGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGTTCCAGGCAAGCGGCTGGAGTGGGTGGCATTTACATGGTATGATGGAAGTAATAAATACTACGCAGACTCCGTCAAAAGTCGATTCACCATCTCCAGAGACAATTTAAAGAACACGCTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGTACACGGGTGTGCATTACTGTGCGAGAGAGATTTCGTTCGGATGAGTTAACGTTCCTCGTTACTACTACTACGGTATGGCCGTCTGGGGCCAGGGGACCACGGTCACGGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTCAGACTCTCCTGTGCAGCGTCTTAATTCACCTTCGGTCGCTATGGCATGCACTGGGTCCGCCTAGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAATTCCATGGTATGATGGAAATAATAAATACTATGCAGACTCCTTGAAGGGTCCGTTCACTATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCGTGAGAGGCGAGGTCACGGCTGTGTCTTACTGTGCGAGGGAAATTGTATTTAAGCGCGTTATTGTTCTCTTTTACTACTACTACCGTATGGACGCCTGGGGTCAAGGAACCATGGTCACCGTCACCTCAC", "TAGGTGCAGCTGGTCGTGTCTGTGGGAGGCGTGGTCCAGCCTGGGAGCTCCGTGACACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGTTATGGCATGCACTGGGTCAACCAGGCTCCAAGCAAGGGGCTGGAGTGGGTGACAATTACATGGTAAAATGGGAGCGATAAATACTATGCAGACTCCGTGAAGAGTCGATTCACCATCTCCAGAGAGAATTCCAAGAACACATTGTATCTGCAAATCAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCATTTATTCTGGCGAGGTGCTGTTATTCTTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCGCGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGCCGATGCGTGGTGCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGACTCCCCTTCAGTACCTATGACATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGTCTGGAGTGGGTGGCAATTACATGGTATAATGGAAATAATTAATCCTATACAGACTCCGTGAAGAGTCGGTTCACCGTCTCCAGAGACAATTCCAAGAACACGCTGTATCTCCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACGTTCGGGCCATTTATTTTTCTATCCTACTTCTACTACGGTATCGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTGCTCAC", "CAGGTGCAGCTGGTGGTGTCTGGGCGAGGCGTGGTGCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCTTCTGGACTCCCCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGTCTGGAGTGGGTGGCAATTACATGGTATAATGGAAATAATTAATCCTATGCAGACTCCGTGAAGAGTCGGTTTACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTCCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGACTACATTTGAGCGACATATTCTTTTGTCCTACTTCTACTACGGTGTCGACGTCTGGGGCTAAGGGACCACGGTCACCGTCTGCTCAC", "CAGGTGCAGCTGGTGGTGTCTGGGGGCGGCGTGGTCCAGCCTGGAAGGTCCCTCATACTCTCCTGTGCAGTGTCTTGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTAGGTGGCAATTACATGGTTAGATCGAAGTAGTAAATACTGTGCACACTCCGTGAAGAATCGATTCACCATCTCCAGAGACAATTCCAAGATAACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTATGTATCACTGTGCGAGAGACCTCTCATTCGTGCGAGTTATCTTTCTACTTTAGTACTACTACGGTATGGACGTTTGGGGCCAAGGGACCACGGTCACCCTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGCTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGAAGCTATAGGATGCACTGGGTCTGTCAGGCTCTACGCAAGGTGCTGGAGTGGGTGGCGATTACATGGTATGATGGAAGTAATATATACTGTGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGAGGCAACTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAAGACACGGCTGTGTATTACTGTGCGAGAGAAATTACACTGGGCTGGATCATTGCTCTATCTTACTACTACTACGGTATGGACCTCTGGGGCCAAGGGACCACGGTCTCCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGACGTGCTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTAGATTCACCTTCAGTGGCTATGGCATGCACTGGGTCCGTCAGGCTCCAGACAAGGTGCTGGAGAGGGTGGCCATCACATGGTATGATGGAAGTAATATATACTATGCAGACTCTGTGAAAGGTCGATTCACCATCTCCAGAGGCAACTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGCACCGAAGACACGGCTATGTATTACTGTGCGAGAGAGAATCAATTCGGCTCCATCATCGTTTTGGCTTACTACTACTACGGTATGGATGTCTGGGGCCAAGGGACCACGGTCTCCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGGTTCAGCCCGGGAGGTCCTTCAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGTTATGGCATTCACTGGTTCCGCTAAGATCCAGGCAAGGGGCTGGAGTAGGTAGTAATTACATGGTAAGATGGAAGTGATAAATAGTATGTAGACTCCGTGAAGAGTCGATTCACCATTTCCAAAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGCCACGGCTATGTATTACTGTGCGAGAGAGATTTCATTCGTGCAATGTATTCTTATTATTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACTACAGTCATCGTCTCCTCGG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "T", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, true], "stops": [true, true, true, true, true, true, true, false, false, true], "paired-uids": [["6728f9fb1f-igk"], ["25beda54e8-igk", "5d404a8547-igh", "5d404a8547-igl"], ["a385b6b9c0-igk"], ["293677779b-igk"], ["11f41b5f10-igh", "539dc7162b-igk"], ["45de550151-igl", "7fc27267b4-igk"], ["6d2eb72d4b-igh", "c074eb0544-igk"], ["5414307e18-igk"], ["1dc717a47d-igk"], ["fa79e38212-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "reco_id": "ca482b4daf", "tree": "[&R] (((1bb77dbdd8-igh:-0.0,486333046a-igh:-0.0)cvy:0.0,3590a73b2b-igh:-0.0)pvx:-0.0)bhv:0.0;", "unique_ids": ["3590a73b2b-igh", "486333046a-igh", "1bb77dbdd8-igh"], "invalid": false, "v_gene": "IGHV2-5*02", "d_gene": "IGHD1-20*01", "j_gene": "IGHJ1*01", "cdr3_length": 51, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false, false], "naive_seq": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "v_3p_del": 4, "d_5p_del": 0, "d_3p_del": 2, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "ACCGGA", "dj_insertion": "CTG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["3590a73b2b-igk"], ["486333046a-igk"], []], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 336}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "8ff5ec4520", "tree": "[&R] ((70cc01a590-igh:-0.0,(5b83db58bc-igh:-0.0,8c82b5df7c-igh:-0.0)lov:0.0)iqv:-0.0)ehv:0.0;", "unique_ids": ["5b83db58bc-igh", "8c82b5df7c-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igk"], ["8c82b5df7c-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "6564755f20", "tree": "[&R] ((4e698cd55b-igh:-0.0,dde37df0f3-igh:-0.0)vwy:-0.0)hnz:0.0;", "unique_ids": ["dde37df0f3-igh", "4e698cd55b-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCTTCGCA", "dj_insertion": "TGCAA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["dde37df0f3-igk"], ["4e698cd55b-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "b2144fab8e", "tree": "[&R] ((a32678cdd4-igh:-0.0,6daaa9b771-igh:-0.0)gjt:-0.0)bfo:0.0;", "unique_ids": ["6daaa9b771-igh", "a32678cdd4-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["3a41497d91-igh"], ["a32678cdd4-igk", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTGACTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCAGTTGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "gl_gap_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACT..CTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCA..TGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "indel_reversed_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "reco_id": "182e588062", "tree": "[&R] ((((c449e7d496-igh:0.0018889927671564904,2bbe5f9b28-igh:0.0018889927671564904)chv:0.04094443655482864,((1df0b0d259-igh:0.03426649301948991,4879a2a0d7-igh:0.03426649301948991)dgx:0.0012946586421423644,b8dd0bbe5b-igh:0.03556115166163228)ixz:0.007272277663719897)syz:0.011342679525079375,(7777388536-igh:0.05342622613191552,((69e29aff11-igh:0.004270451329474284,831950bd07-igh:0.004270451329474284)ily:0.0038833328054791103,9f7c316b7a-igh:0.008153784132548364)cdf:0.04527244198974702)kuw:0.0007498827204400651)jrx:0.0006929575419261174)emy:0.0;", "unique_ids": ["4879a2a0d7-igh", "7777388536-igh", "69e29aff11-igh", "c449e7d496-igh", "b8dd0bbe5b-igh", "831950bd07-igh", "1df0b0d259-igh", "2bbe5f9b28-igh", "9f7c316b7a-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD5-24*01", "j_gene": "IGHJ4*02", "cdr3_length": 51, "mut_freqs": [0.07901907356948229, 0.04087193460490463, 0.04087193460490463, 0.07084468664850137, 0.05449591280653951, 0.03814713896457766, 0.05994550408719346, 0.07084468664850137, 0.051771117166212535], "n_mutations": [29, 15, 15, 26, 20, 14, 22, 26, 19], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACTGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCTCTGGATTCGCCTTTAGCAGCTATGCCATGGGCTGGGTCCGCCAGGCTCCAGGAAAAGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGCCTGGTTCGCCATCTCCAGAGACAATTCCAGGAACACCCTATATCTGCAAATGGACAGCCTGAGAGCCGAGGAGACGGCCGTATATTACTGTGCGCACGGATGGCCTGCGCTTAGGCATGGTTACAGTTTTGACTACTGGGGCCAGGGAATCCTGGTGACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGCGGAGGCTTGGAACGGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTCCACCATCTCCAGAGACAATTCCAAGAACAGGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTATATTACTGTGCGGTTGCATGGGGAGTGGGTACAGATCGCTACAATTTTGAATACTGGGGCCAGGGAACCCTGGTGACCCTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTGACTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTTCAGCTTGGGGGGTCCCTGAGAATCTCCTCTGTAGCCTCTGGATTCGCCTTTGGCAGCTATGCCATGAGCTGGGTCCGCCAGCTTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTGCGCAGACTCCGTGAAGGCCCGGTTCACCATCTCCAGAGACGATTCCAAGAACACGCTGTATATGCAAATGAACAGCCTGAGAGCCGAGGACACCGCCGTATATTACTGTGCCAGCGGATCGATTGCGCGTAGGGATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGACTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGGGGCTTGGTACAGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCGCTGGATTCGCCTTTAGCAGCTATCCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGTCTCAGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGGGCCGAGGACACGGCCGTATATTACTGTGCGGGTGGATTGGCTGCGCCTAGATATACCTTCAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCAGTTGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACTGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCTCTGGATTCGCCTTTAGCACCTATGGCATAAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTTGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCATATATTACTGTGCAGGTCGATGGGATGCGCTTAGACATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGCTCACCGTTTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTTCAGCTTGGGGGGTCCCTGAGAATCTCCTCTGTAGCCTCTGGATTCGCCTTTGGCAGCTATGCCATGAGCTGGGTCCGCCAGCTTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTGCGCAGACTCCGTGAAGGCCCGGTTCACCATCTCCAGAGACGATTCCAAGAACACGCTGTATATGCAAATGAACAGCCTGAGAGCCGAGGACACCGCCGTATATTACTGTGCCAGCGGATCGATTGCGCGTAGGGATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGACTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGGGGCTTAGTACACCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGACGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCACGGAACCCTGGCCACCGTCTCCTCAG"], "has_shm_indels": [false, false, true, false, false, true, false, false, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 6, "d_5p_del": 0, "d_3p_del": 3, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGATGGGGAGCGC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [true, true, false, true, true, false, true, true, true], "stops": [false, false, true, false, false, true, false, false, false], "paired-uids": [["4879a2a0d7-igk"], ["7777388536-igk"], ["1bd9242383-igl", "69e29aff11-igk"], ["c449e7d496-igk"], ["b8dd0bbe5b-igk"], ["831950bd07-igk"], ["1df0b0d259-igk"], ["2bbe5f9b28-igk"], ["9f7c316b7a-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 333}}, {"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "reco_id": "d217d13f25", "tree": "[&R] ((053a8abb6c-igh:0.028893272857359993,(((5cb34a1703-igh:0.0025010348959690416,f5dedfcd67-igh:0.0025010348959690416)aik:0.008113407000401307,(2b1422c0aa-igh:0.00663818706748973,39fc72ec75-igh:0.00663818706748973)der:0.003976254828880618)aem:0.014821658745573129,((1b28490bf6-igh:0.020698778253184325,d3edbb8447-igh:0.020698778253184325)bfo:0.00031948954599180933,031d868683-igh:0.021018267797272252)mqw:0.004417832843551295)mtv:0.0034571722142965862)vwz:0.0007868589419449512)hkw:0.0;", "unique_ids": ["f5dedfcd67-igh", "5cb34a1703-igh", "053a8abb6c-igh", "d3edbb8447-igh", "031d868683-igh", "1b28490bf6-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ4*02", "cdr3_length": 42, "mut_freqs": [0.025139664804469275, 0.030726256983240222, 0.030726256983240222, 0.027932960893854747, 0.027932960893854747, 0.013966480446927373], "n_mutations": [9, 11, 11, 10, 10, 5], "input_seqs": ["CAGGTCCAGCTGGTGCAGTCTGGGACTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCCGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGAAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCTTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTGTCGCAGCCATATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGACTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCCGCCGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGAAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGTACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCTTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTGTCGCAGCCATATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGCAGGTCTCCTGCAAGACTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGAGAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGTACAGAAGTTCCAGGGCAGAGTCACGATTACTGCGGACAAATCCACGAGCACACCCTACATGGAGCTGAACAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTATGAGGTTATCGCAGGCAGATAGTTTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAGGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGATATAGCAAACTACGCACCGAAGTTCCAGGGCCGAGTCACGGTTACCGCGGACAAATCCACGAGCACAGCCTAGATGGAGCTGAGCAGCCTGACATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCCCAGGCACATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCCCCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGTTCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCTAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATTATCGCAGATACATAATTCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCGCCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGTACGTACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 24, "d_3p_del": 7, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "G", "dj_insertion": "CAGGCACATAGTTCC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, true, true, false], "paired-uids": [[], ["5cb34a1703-igk"], ["053a8abb6c-igk"], ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igk"], ["031d868683-igk"], ["1b28490bf6-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 324}}, {"has_shm_indels": [false, false, false, false, true, false, false, false, false, false, true, true], "qr_gap_seqs": ["", "", "", "", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGG.GGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "", "", "", "", "", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTC.CCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATATATACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", "", "", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTAT...TACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "", "", "", "", "", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "reco_id": "e707c96016", "tree": "[&R] (((((3a41497d91-igh:0.03701060555844492,d068457847-igh:0.03701060555844492)gju:0.02809087417206145,45eb339259-igh:0.06510147974734387)gko:0.013275047186165083,(552c9f1e08-igh:0.07350469263200017,de762b8ce4-igh:0.07350469263200017)bej:0.004871834288600029)uwz:0.023224487793366392,((c8a03324cc-igh:0.012804551985145862,922ea4413e-igh:0.012804551985145862)gqw:0.08472147739517823,((8c03b80be0-igh:0.05656827773700887,((f4ebbe68a7-igh:0.007938731111116483,383777b7c5-igh:0.007938731111116483)dhk:0.0013363399093115989,((0bfaf8b4b1-igh:0.007172912545146474,a55e058517-igh:0.007172912545146474)guv:0.001674235359903548,d8138c32a6-igh:0.00884714790448877)ijy:0.000427923116668937)hpz:0.04729320671938705)ovz:0.03695216953191156,b68b8d0fe2-igh:0.09352044729137046)hko:0.004005582083902381)dlt:0.00407498534542876)htz:0.04714040889430082)emp:0.0;", "unique_ids": ["b68b8d0fe2-igh", "de762b8ce4-igh", "552c9f1e08-igh", "c8a03324cc-igh", "d068457847-igh", "0bfaf8b4b1-igh", "8c03b80be0-igh", "f4ebbe68a7-igh", "922ea4413e-igh", "a55e058517-igh", "383777b7c5-igh", "3a41497d91-igh"], "invalid": false, "v_gene": "IGHV3-11*01", "d_gene": "IGHD7-27*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1440443213296399, 0.11080332409972299, 0.13573407202216067, 0.13850415512465375, 0.1440443213296399, 0.19667590027700832, 0.15512465373961218, 0.1883656509695291, 0.12742382271468145, 0.19667590027700832, 0.19390581717451524, 0.15512465373961218], "n_mutations": [52, 40, 49, 50, 52, 71, 56, 68, 46, 71, 70, 56], "input_seqs": ["TAGGTGCAGGTGATGGAGTTTAGGGGCGGCTTGGTCAAGCCTGGAGGGTCCGTGGAACTCTCCTGTGCACCTTCTACATTCACCTTCGGCGAGCACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGACTGAGTTTCACACATTAGTAGTAGCGGTACTACCGTATACTACGCAAACTCCGTGAAGGGCCGATTCACCATCTCTAGAGACAACGCCAAGAAGTCACTGCATCTGCCAATGAACAGCCTCGGCGCCGAGGACACGCCCGAGTATTGCTGTGCGAGGGACTACTTTATGTAAACCTTCTCCTTTGAGCACTGGGGCCAGGGAACCCTGGTCACCGTGTCCCCAG", "CAGTTGCAGCTGGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTAGAGGGTCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGGGCTGGATCCGCCAGGCTTCAGGGAAGGGGCTGGACTGGGTTTCACACATTAGTACTAGCGGTAGTACCGTATATTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCTAGGACAACGCCAAGAACTCACTGTATCTGCCAATGAACAGCCTGCGTGCGGAGGACACGCCCGTGTATTACTGTGCGAGAGATTTGTCTGATCTGGTTTCCCCCTTTGAGTACTGGGGCCGGGGAGCCCTGGTCACCGTGTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGGTCCTTGAGACGCTCCTGTGCAGCGTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTAGACTGGGTTTCATACATTAGTACTAGCGGTCGTACCATATACTTCGCAGACTCTGTGAAGGGCCGATTCACAATCTTCAGGCGCAACGCCAAGAACTTACTGTATGTGCCAATGAACAGCCTGGGCGCGCAGGACACGCCCGTGTATTACTGTGCGAGCGATTAGTGTGACTTGTCTTTGACCTTTGAGTGCTGGGGCCGGGGAGCCCTGGTCGCCCTGTCTTCAG", "CAGGTGCAGCTGGTGCAGTCTGGGGGCGGCTTGGTCAAGCCTCGAGGGCCCGTAAGACTCTCCTCTGCAGCCTCTGCATTTACCTTCGGTGATCACTTCATGAGCTGGATCCGCCAGGCTGCAGGGAAGAGGGTGGACTGGGTTTCACACATTAGTGGTAGCGGTAGTGCCGTATAGTACGCAGAATCTGTGAAGGGCCGATTCACGATCTCCAGGGACAACGCCAAGAACTTACTGTACCTGCCAATGAACAGCCTGGCAGCCGAGAACACGCCCGTCTATTACTGTGCGAAAGATTGTTTTATCTGTCGCTTCGGCTTTGAATGCTGGGGCCAGGGAACCCTGGCCACCGTGTCCTCAG", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGGGGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGGTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCACCTTCGATGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTGCCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGAATGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTGTAGCTGGTGGAGTCTAGGGGCGGCTTGGTTAAGCCTGGAGGGTTCGTGAGACTCTCCTCTGCAGCCTCTGCATTTACCTTCGGTGATTACTACATGAGCTGGATCTGCCACGCCTCAGGGTCGGGGTTGGACTGGGTTTCGCTCATTAGTAATAGCGGTAGTACCATATACTACGCAAACTCTGCGAAGGGCCGATTGACCATATCCAAGGACGACGCCAAAAACTCACTGTATCTGTTAACAAATAGCCTGGGCGCCGAGGCCACGCCCGTGTATTACTGTGCGAGAGATCTGATTACCTCCTTTTTCTCCTTTGGGCACTGGGGCTAGGGAACCCTGGTCACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTTTGCACCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAGAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGACTGAATTGCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTGCAGCTGGTGCAGTCTGGGGGCGGCTTGGTCAAGCCTGGAGGGCCCGTAAGACTCTCCTGTGCAGTCTCTGCATTTACTTTCGGTGATCACTTCATGAGCTGGATCCGCCAGGCTGCAGGGAAAAGGCTGGACTGGGTTTCACACATTAGTGGTAGCGGTAGTGCCGTATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTTACTGTACCTGCCAATGAACAGCCCGGGAGCCGAGAACACGCCCGTCTATTACTGTGCGAAAGATTAGTTTGTCTGTCCCTTCGCCTTTGAATTCTGGGGCCAGGGAACCCTGGCCACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGGTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCGCCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTAACCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCCCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATATATACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 0, "d_3p_del": 1, "j_5p_del": 4, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCAGC", "dj_insertion": "CTGCTC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, false, true, true, true, true, true, false, true], "stops": [true, true, true, true, true, true, true, true, true, true, true, true], "paired-uids": [["b68b8d0fe2-igl"], ["de762b8ce4-igl", "ebb52c305d-igh"], ["552c9f1e08-igl"], ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igl"], ["d068457847-igl"], ["0bfaf8b4b1-igl"], ["8c03b80be0-igl"], ["f4ebbe68a7-igl"], ["922ea4413e-igl"], ["a55e058517-igl"], ["383777b7c5-igl"], ["6daaa9b771-igh"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAG.....GGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTG..................AGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", ""], "gl_gap_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", ""], "indel_reversed_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAGCCTTGGGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", ""], "reco_id": "dd76478982", "tree": "[&R] (((fd0c4f0f17-igh:0.02517168473201808,5d404a8547-igh:0.02517168473201808)ady:0.08839082944957491,898ab41392-igh:0.11356251419355307)qtx:0.04491930606482552)ivw:0.0;", "unique_ids": ["898ab41392-igh", "5d404a8547-igh", "fd0c4f0f17-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1523545706371191, 0.11911357340720222, 0.13573407202216067], "n_mutations": [55, 43, 49], "input_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAGGGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGAGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCCCGGGGTTCCCTGAGACTCTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGCGGTGATAACACATGGTACGCGGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAACACACAGGCGTATATTGCTGTGCGATAGATTTATAGGTTTTGGATTTTTGGTTTGACTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG"], "has_shm_indels": [true, true, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CTCAGCAC", "dj_insertion": "TGAAT", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [false, true, true], "stops": [true, true, true], "paired-uids": [["898ab41392-igl", "c8a03324cc-igh", "c8a03324cc-igl"], ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igl"], ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igl"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"has_shm_indels": [false, false, false, false, false, false, true], "qr_gap_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCT........TGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTATCCGCACTAACTGGAACTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "reco_id": "da8c9d16ae", "tree": "[&R] (((((fa02aeb02e-igh:0.032336570644115506,a9c9c3afba-igh:0.032336570644115506)grs:0.05910535130894349,(((652adbce26-igh:0.02102087205164989,45de550151-igh:0.02102087205164989)arx:0.034429487050056995,1bd9242383-igh:0.05545035910170689)eqt:0.01933696510731599,(11f41b5f10-igh:0.04164328633318094,6d2eb72d4b-igh:0.04164328633318094)aiv:0.033144037875841935)eku:0.016654597751542086)gyz:0.0018506930933334246,(19e0f0b170-igh:0.07848566084723978,504e3941e6-igh:0.07848566084723978)oqr:0.014806954187893679)nyz:0.016703069278684802,ebb52c305d-igh:0.10999568429880632)efh:0.0040757011599203835)gko:0.0;", "unique_ids": ["ebb52c305d-igh", "652adbce26-igh", "6d2eb72d4b-igh", "11f41b5f10-igh", "504e3941e6-igh", "19e0f0b170-igh", "fa02aeb02e-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD1-7*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1523545706371191, 0.09695290858725762, 0.13019390581717452, 0.12188365650969529, 0.10526315789473684, 0.0886426592797784, 0.11080332409972299], "n_mutations": [55, 35, 47, 44, 38, 32, 40], "input_seqs": ["CAGGTCCAGCTGGCGCACTGTGGGCCTGAGGTGAAGAACCCTGGCTCCTCGCTAAAACTCTCCTGCAAGGCTTCTGGAGGCACCTCCACCAGCTGTGCTGTCAACTGGGAGCGACAGGCGCCTGGACAAGGGCTTGAATGGATGGGAAGGATCATCCCTATGGTTTGCATAGCACACTACGCACAGAAGTTGCCGGCCACAGTCACGATTACCGCGAACAAATCCACGACCACAGCCTACATGGGGCTGAGCAGCCTGAGATTTAAGGACACGCCCGTCTATCACTGTACCAGAGAGCTTGTCTTCCGATACTGGATACCATTCTACTGGGTCCAGGGAACCCTGGTCAGCGTCTCCTCAG", "CAGGTCCAGCTGGTGCATTCTGGGGCTGAGGTGAAGAAGCCTAGGTCCTCGGTGAGGGTCTCCTGCAGGGCTTCCGCAGGCATCTTCAGCAGCTATGCTGTCAGCTGAGTGCGACAGGCTCCTGGACAAGGGCTTGAGTGGATGGGAGAGATCATCCCTATCCTTGGTATAGCAAACTACGCACAAAAGCTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAACTGAGCAGCCTGTGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGACATTACACCCGCCGATTGATTTGTTCTCTGCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTTGTGCAGTCTAGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAGGGTCTCGTGCAAGGCTTCTGGAGGCACCTTCGGCTGCTATGCTCTCAGCTGGGTGCGACCGGCCCCTGGACAAGGGCTTGACTGGATGGGCAGGATCGTCCCTATACTTGGTATAGCAAACTACGTACAAAAGTTCCAGGGCAGAGTCACAATTACCGCGGACAAATCCACGAACACAGGCTACATGGAACTGAGCAGCCTCGCATCTGAGGACAGCGCCATGTATCACTGTGCGAGAGACATTTCTCCTATGAATTCATCCTTCTTCTCCTGGGGCCAGGGAATCCTGGTCAGCGTCGCCTCAG", "CAGGTCCAGCTTGTGCAGTCTGGGGCCCAGGTGAAGAAGCCTGAGTCCTCGGTGAGGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTGTCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGAGAAGGATCATTCCTATCCTTGGTATAGCAAACTACGTAGAAAAGTTCCAGGGCAGAGTCACGATTACCGCGGACACATCCACGAACACAGCCTACATCGAACTGAACAGCCTCGCATCTGAGGACAGCACCGTGTATCACTGTGCGAGACATATTACTCCTGTTGATTAGTATGTCCGCTGCTGGGGCCAGGGAACCCTGGTCAGTGTCTCCTCAG", "CAGGTCCAGCTGACGCTGTCTGGCGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTTTCCTGCAAGGCGTCCGGAGGCACCTTCCACAGCTATGCTGTCGGCTGGGTGCGACAGGCCCCTGGACAAGGGTTTGAGTGAGTGGGAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACCATTACCGCGGACAAATCCACGAGTAGAGCCTACATGGAGCTGAGCGGCCTAAGATCTGACGACACGGCTGTGTATTACTGTGCGAGAGAGATGACCGTCACAATCTCCTGTTGCCCGTACTGGGGCCAGGGAACCCTGGTCCCCGTCTCCTCAG", "CAGGTCCAGCTGATGTGGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCCCTGTGAAGGTCTCCTGCAAGGCTTCTGGGGGCACCTTCAGCAGCTATACTGTCAGCTGGGTGCGACAGGCCCCTGAACAAGCGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCACATTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTAAGCAGCCTGAGATCTGACGACACGGCTGTGTATTACTGTGCGAGAGAAACTCCGTCGATTGGATACTGTTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCTTGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTATCCGCACTAACTGGAACTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 10, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTATCCGCAC", "dj_insertion": "CC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, false], "stops": [false, true, false, true, true, false, true], "paired-uids": [["de762b8ce4-igh", "de762b8ce4-igl"], ["652adbce26-igl", "d8138c32a6-igl"], ["c074eb0544-igh", "c074eb0544-igk"], ["539dc7162b-igh", "539dc7162b-igk"], ["504e3941e6-igl", "5b83db58bc-igh", "5b83db58bc-igk"], ["19e0f0b170-igl", "d3edbb8447-igh", "d3edbb8447-igk"], ["70cc01a590-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}]}