partis-bcr 1.0.11.post1.dev3__cp312-cp312-manylinux1_x86_64.whl → 1.0.12__cp312-cp312-manylinux1_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. bin/partis-test.py +3 -3
  2. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/partis-test.py +3 -3
  3. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/METADATA +1 -1
  4. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/RECORD +55 -54
  5. test/new-results/run-times.csv +5 -5
  6. test/new-results/test/simu.yaml +1 -1
  7. test/new-results/test.log +26 -26
  8. test/paired/new-results/partition-new-simu/fasttree/iclust-2/log +1 -1
  9. test/paired/new-results/partition-new-simu/igh+igk/partition-igh/fasttree/iclust-1/log +2 -2
  10. test/paired/new-results/partition-new-simu-annotation-performance/plots/flcount-matrix.svg +107 -107
  11. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop-log.svg +83 -83
  12. test/paired/new-results/partition-new-simu-annotation-performance/plots/func-non-func-per-drop.svg +61 -61
  13. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-after.svg +18 -18
  14. test/paired/new-results/partition-new-simu-annotation-performance/plots/paired-seqs-per-seq-before.svg +24 -24
  15. test/paired/new-results/partition-new-simu-annotation-performance/plots/pseq-matrix.svg +35 -35
  16. test/paired/new-results/partition-new-simu-annotation-performance/plots/seqs-per-droplet.svg +22 -22
  17. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct-family.svg +45 -45
  18. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-correct.svg +45 -45
  19. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-mispaired.svg +45 -45
  20. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-multiple.svg +15 -15
  21. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-near-family.svg +15 -15
  22. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-total.svg +47 -47
  23. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance-unpaired.svg +48 -48
  24. test/paired/new-results/partition-new-simu-annotation-performance/plots/true-pair-clean-performance.svg +27 -27
  25. test/paired/new-results/run-times.csv +6 -6
  26. test/paired/new-results/subset-partition-new-simu/isub-0/partition.log +9 -5
  27. test/paired/new-results/subset-partition-new-simu/isub-1/partition.log +6 -2
  28. test/paired/new-results/subset-partition-new-simu/merged-partition.log +7 -3
  29. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igh/sw-cache.yaml +1 -1
  30. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igk/sw-cache.yaml +1 -1
  31. test/paired/new-results/subset-partition-new-simu/merged-subsets/parameters/igl/sw-cache.yaml +1 -1
  32. test/paired/new-results/test/simu/all-seqs.fa +168 -212
  33. test/paired/new-results/test/simu/igh+igk/igh.yaml +1 -1
  34. test/paired/new-results/test/simu/igh+igk/igk.yaml +1 -1
  35. test/paired/new-results/test/simu/igh+igl/igh.yaml +1 -1
  36. test/paired/new-results/test/simu/igh+igl/igl.yaml +1 -1
  37. test/paired/new-results/test/simu/igh.yaml +1 -1
  38. test/paired/new-results/test/simu/igk.yaml +1 -1
  39. test/paired/new-results/test/simu/igl.yaml +1 -1
  40. test/paired/new-results/test/simu/meta.yaml +1 -1
  41. test/paired/new-results/test.log +115 -118
  42. test/test.py +3 -3
  43. test/trees.nwk +100 -0
  44. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/cf-alleles.py +0 -0
  45. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/cf-germlines.py +0 -0
  46. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/compare-plotdirs.py +0 -0
  47. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/extract-pairing-info.py +0 -0
  48. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/gctree-run.py +0 -0
  49. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/get-naive-probabilities.py +0 -0
  50. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/parse-output.py +0 -0
  51. {partis_bcr-1.0.11.post1.dev3.data → partis_bcr-1.0.12.data}/scripts/split-loci.py +0 -0
  52. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/WHEEL +0 -0
  53. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/entry_points.txt +0 -0
  54. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/licenses/COPYING +0 -0
  55. {partis_bcr-1.0.11.post1.dev3.dist-info → partis_bcr-1.0.12.dist-info}/top_level.txt +0 -0
test/paired/new-results/test/simu/igh+igl/igl.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igl", "functionalities": {}, "seqs": {"v": {"IGLV1-40*01": "CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC", "IGLV1-51*02": "CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATCTATGAAAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG", "IGLV2-14*04": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTC", "IGLV2-23*02": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC", "IGLV3-1*01": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCA", "IGLV3-19*01": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT", "IGLV3-27*01": "TCCTATGAGCTGACACAGCCATCCTCAGTGTCAGTGTCTCCGGGACAGACAGCCAGGATCACCTGCTCAGGAGATGTACTGGCAAAAAAATATGCTCGGTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATTTATAAAGACAGTGAGCGGCCCTCAGGGATCCCTGAGCGATTCTCCGGCTCCAGCTCAGGGACCACAGTCACCTTGACCATCAGCGGGGCCCAGGTTGAGGATGAGGCTGACTATTACTGTTACTCTGCGGCTGACAACAATCT", "IGLV4-60*03": "CAGCCTGTGCTGACTCAATCATCCTCTGCCTCTGCTTCCCTGGGATCCTCGGTCAAGCTCACCTGCACTCTGAGCAGTGGGCACAGTAGCTACATCATCGCATGGCATCAGCAGCAGCCAGGGAAGGCCCCTCGGTACTTGATGAAGCTTGAAGGTAGTGGAAGCTACAACAAGGGGAGCGGAGTTCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGACCGCTACCTCACCATCTCCAACCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGAGACCTGGGACAGTAACACTCA", "IGLV7-46*04": "CAGGCTGTGGTGACTCAGGAGCCCTCACTGACTGTGTCCCCAGGAGGGACAGTCACTCTCACCTGTGGCTCCAGCACTGGAGCTGTCACCAGTGGTCATTATCCCTACTGGTTCCAGCAGAAGCCTGGCCAAGCCCCCAGGACACTGATTTATGATACAAGCAACAAACACTCCTGGACCCCTGCCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGCCCTGACCCTTTCGGGTGCGCAGCCTGAGGATGAGGCTGAGTATTACTGCTTGCTCTCCTATAGTGGTGCTCGG", "IGLV8-61*01": "CAGACTGTGGTGACCCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAGTCACACTCACTTGTGGCTTGAGCTCTGGCTCAGTCTCTACTAGTTACTACCCCAGCTGGTACCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGCACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGGGAACAAAGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGATTATTACTGTGTGCTGTATATGGGTAGTGGCATTTC"}, "d": {"IGLDx-x*x": "A"}, "j": {"IGLJ1*01": "TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG", "IGLJ2*01": "TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "IGLJ3*02": "TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"}}, "cyst-positions": {"IGLV8-61*01": 267, "IGLV2-14*04": 267, "IGLV4-60*03": 273, "IGLV2-23*02": 267, "IGLV1-40*01": 267, "IGLV3-1*01": 258, "IGLV1-51*02": 264, "IGLV7-46*04": 267, "IGLV3-27*01": 258, "IGLV3-19*01": 258}, "phen-positions": {"IGLJ1*01": 7, "IGLJ2*01": 7, "IGLJ3*02": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 3, "n_procs": 1, "partition": [["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false, true, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCC........AAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", ""], "reco_id": "e707c96016", "tree": "[&R] (((((3a41497d91-igl:0.007385162951159356,d068457847-igl:0.007385162951159356)bkm:0.005605303670959556,45eb339259-igl:0.0129904666254787)iqr:0.002648926846099352,(552c9f1e08-igl:0.01466725887272979,de762b8ce4-igl:0.01466725887272979)gis:0.0009721345962724225)ahz:0.004634256160450372,((c8a03324cc-igl:0.0025550433855388802,922ea4413e-igl:0.0025550433855388802)mos:0.016905476324571775,((8c03b80be0-igl:0.011287736113761764,((f4ebbe68a7-igl:0.0015841087168501067,383777b7c5-igl:0.0015841087168501067)fnr:0.0002666556744881951,((0bfaf8b4b1-igl:0.0014312958996758355,a55e058517-igl:0.0014312958996758355)hkt:0.0003340799418143904,d8138c32a6-igl:0.001765375841378233)beo:8.538855010565957e-05)adh:0.009436971722983427)efn:0.00737350252108383,b68b8d0fe2-igl:0.01866123863932531)clt:0.0007992810697774085)ags:0.0008131299216937824)buv:0.009406482169521176)alp:0.0;", "unique_ids": ["b68b8d0fe2-igl", "de762b8ce4-igl", "552c9f1e08-igl", "c8a03324cc-igl", "d068457847-igl", "0bfaf8b4b1-igl", "8c03b80be0-igl", "f4ebbe68a7-igl", "d8138c32a6-igl", "922ea4413e-igl", "a55e058517-igl", "383777b7c5-igl"], "invalid": false, "v_gene": "IGLV3-19*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 39, "mut_freqs": [0.04, 0.021538461538461538, 0.04, 0.04, 0.03076923076923077, 0.021538461538461538, 0.03076923076923077, 0.018461538461538463, 0.021538461538461538, 0.036923076923076927, 0.018461538461538463, 0.018461538461538463], "n_mutations": [13, 7, 13, 13, 10, 7, 10, 6, 7, 12, 6, 6], "input_seqs": ["TCTTCTGAGCTGACTCAGGACCCTGCTCTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAAAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTTCCAGCAGAAGCCAGGACAGGCTCCTGTACTTGTCATCTATGGTAAAAGCAACCGGCCCTCAGTGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGCGGCTCAGGCGAAACATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCTAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCGTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCAATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGCGTCTGTGGCCTTGGGACAGATAGTCAGGATCGCATGCCAAGAAGACAGCCTCAGAAGCTATTATCCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTCGGGCTCAGGCAGAAGATGAGGCTGCCTCTTACTGTAACTCCCGGGACAACAGTGATAACGATGTGGTATTCGTCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCGGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAGCTCAGAAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCATGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGAAAGGCCCCTGTACTTGTCATCTATGGTAAAAACTATCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTAACCATCACTGGGGCTGAGGCGGAAGATGAGGCTGACTCTTACTGTAACTCCCGGGACAGCAGTGGTAACGATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAACAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTTACTCAGGACCCTGCTGTGTCTGTGGCCTTAGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAATCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGCTAAGCATCTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTTCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGAGAGCCTCAGAAGCTATTATGCAAGCTCGTACCAGCAGAAGCCAGGACAGGCCCCTATCCTTGTCATCTATAGTAAGAACAACCGGCCCTCAGGGATCCCAGACCGATTCTTTGGCTCCAAACACAGCTTCCTTGACAATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTGCTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGATAGTCAGGATCACATGCCAAGAAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCGTCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTATTTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACCATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, false, true, true], "stops": [false, true, false, false, false, false, false, false, false, true, false, false], "paired-uids": [["b68b8d0fe2-igh"], ["de762b8ce4-igh", "ebb52c305d-igh"], ["552c9f1e08-igh"], ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igh"], ["d068457847-igh"], ["0bfaf8b4b1-igh"], ["8c03b80be0-igh"], ["f4ebbe68a7-igh"], ["652adbce26-igh", "652adbce26-igl"], ["922ea4413e-igh"], ["a55e058517-igh"], ["383777b7c5-igh"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 294}}, {"qr_gap_seqs": ["", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "gl_gap_seqs": ["", "CAGTCTGCCCTG...ACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "indel_reversed_seqs": ["", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", ""], "reco_id": "dd76478982", "tree": "[&R] (((fd0c4f0f17-igl:-0.0,5d404a8547-igl:-0.0)bqw:-0.0,898ab41392-igl:-0.0)fpy:-0.0)cgn:0.0;", "unique_ids": ["898ab41392-igl", "5d404a8547-igl", "fd0c4f0f17-igl"], "invalid": false, "v_gene": "IGLV2-14*04", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ3*02", "cdr3_length": 39, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGCTAACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "has_shm_indels": [false, true, false], "naive_seq": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], []], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["898ab41392-igh", "c8a03324cc-igh", "c8a03324cc-igl"], ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igh"], ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igh"]], "loci": ["igl", "igl", "igl"], "codon_positions": {"v": 267, "j": 303}}, {"has_shm_indels": [false, false, true, false, false, false], "qr_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGC.GGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGG.....CCAAGCTGACCGTCCTAG", "", "", ""], "gl_gap_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "indel_reversed_seqs": ["", "", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "", "", ""], "reco_id": "da8c9d16ae", "tree": "[&R] (((((fa02aeb02e-igl:-0.0,a9c9c3afba-igl:-0.0)efs:-0.0,(((652adbce26-igl:-0.0,45de550151-igl:-0.0)giy:-0.0,1bd9242383-igl:-0.0)axy:-0.0,(11f41b5f10-igl:-0.0,6d2eb72d4b-igl:-0.0)cfj:-0.0)hns:-0.0)hjv:-0.0,(19e0f0b170-igl:-0.0,504e3941e6-igl:-0.0)emn:-0.0)iwz:-0.0,ebb52c305d-igl:-0.0)eju:-0.0)bgr:0.0;", "unique_ids": ["a9c9c3afba-igl", "1bd9242383-igl", "45de550151-igl", "652adbce26-igl", "504e3941e6-igl", "19e0f0b170-igl"], "invalid": false, "v_gene": "IGLV3-1*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 33, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0], "input_seqs": ["TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGCCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, false, true, true, true], "stops": [false, false, true, false, false, false], "paired-uids": [[], ["69e29aff11-igh", "69e29aff11-igk"], ["7fc27267b4-igh", "7fc27267b4-igk"], ["652adbce26-igh", "d8138c32a6-igl"], ["504e3941e6-igh", "5b83db58bc-igh", "5b83db58bc-igk"], ["19e0f0b170-igh", "d3edbb8447-igh", "d3edbb8447-igk"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 288}}]}
1
+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igl", "functionalities": {}, "seqs": {"v": {"IGLV1-40*01": "CAGTCTGTGCTGACGCAGCCGCCCTCAGTGTCTGGGGCCCCAGGGCAGAGGGTCACCATCTCCTGCACTGGGAGCAGCTCCAACATCGGGGCAGGTTATGATGTACACTGGTACCAGCAGCTTCCAGGAACAGCCCCCAAACTCCTCATCTATGGTAACAGCAATCGGCCCTCAGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCACTGGGCTCCAGGCTGAGGATGAGGCTGATTATTACTGCCAGTCCTATGACAGCAGCCTGAGTGGTTC", "IGLV1-51*02": "CAGTCTGTGTTGACGCAGCCGCCCTCAGTGTCTGCGGCCCCAGGACAGAAGGTCACCATCTCCTGCTCTGGAAGCAGCTCCAACATTGGGAATAATTATGTATCCTGGTACCAGCAGCTCCCAGGAACAGCCCCCAAACTCCTCATCTATGAAAATAATAAGCGACCCTCAGGGATTCCTGACCGATTCTCTGGCTCCAAGTCTGGCACGTCAGCCACCCTGGGCATCACCGGACTCCAGACTGGGGACGAGGCCGATTATTACTGCGGAACATGGGATAGCAGCCTGAGTGCTGG", "IGLV2-14*04": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTC", "IGLV2-23*02": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATAACCTTGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAAGCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACAATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCTGCTCATATGCAGGTAGTAGCACTTTC", "IGLV3-1*01": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGCA", "IGLV3-19*01": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATCT", "IGLV3-27*01": "TCCTATGAGCTGACACAGCCATCCTCAGTGTCAGTGTCTCCGGGACAGACAGCCAGGATCACCTGCTCAGGAGATGTACTGGCAAAAAAATATGCTCGGTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGGTGATTTATAAAGACAGTGAGCGGCCCTCAGGGATCCCTGAGCGATTCTCCGGCTCCAGCTCAGGGACCACAGTCACCTTGACCATCAGCGGGGCCCAGGTTGAGGATGAGGCTGACTATTACTGTTACTCTGCGGCTGACAACAATCT", "IGLV4-60*03": "CAGCCTGTGCTGACTCAATCATCCTCTGCCTCTGCTTCCCTGGGATCCTCGGTCAAGCTCACCTGCACTCTGAGCAGTGGGCACAGTAGCTACATCATCGCATGGCATCAGCAGCAGCCAGGGAAGGCCCCTCGGTACTTGATGAAGCTTGAAGGTAGTGGAAGCTACAACAAGGGGAGCGGAGTTCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGACCGCTACCTCACCATCTCCAACCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGAGACCTGGGACAGTAACACTCA", "IGLV7-46*04": "CAGGCTGTGGTGACTCAGGAGCCCTCACTGACTGTGTCCCCAGGAGGGACAGTCACTCTCACCTGTGGCTCCAGCACTGGAGCTGTCACCAGTGGTCATTATCCCTACTGGTTCCAGCAGAAGCCTGGCCAAGCCCCCAGGACACTGATTTATGATACAAGCAACAAACACTCCTGGACCCCTGCCCGGTTCTCAGGCTCCCTCCTTGGGGGCAAAGCTGCCCTGACCCTTTCGGGTGCGCAGCCTGAGGATGAGGCTGAGTATTACTGCTTGCTCTCCTATAGTGGTGCTCGG", "IGLV8-61*01": "CAGACTGTGGTGACCCAGGAGCCATCGTTCTCAGTGTCCCCTGGAGGGACAGTCACACTCACTTGTGGCTTGAGCTCTGGCTCAGTCTCTACTAGTTACTACCCCAGCTGGTACCAGCAGACCCCAGGCCAGGCTCCACGCACGCTCATCTACAGCACAAACACTCGCTCTTCTGGGGTCCCTGATCGCTTCTCTGGCTCCATCCTTGGGAACAAAGCTGCCCTCACCATCACGGGGGCCCAGGCAGATGATGAATCTGATTATTACTGTGTGCTGTATATGGGTAGTGGCATTTC"}, "d": {"IGLDx-x*x": "A"}, "j": {"IGLJ1*01": "TTATGTCTTCGGAACTGGGACCAAGGTCACCGTCCTAG", "IGLJ2*01": "TGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "IGLJ3*02": "TTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"}}, "cyst-positions": {"IGLV8-61*01": 267, "IGLV2-14*04": 267, "IGLV4-60*03": 273, "IGLV2-23*02": 267, "IGLV1-40*01": 267, "IGLV3-1*01": 258, "IGLV1-51*02": 264, "IGLV7-46*04": 267, "IGLV3-27*01": 258, "IGLV3-19*01": 258}, "phen-positions": {"IGLJ1*01": 7, "IGLJ2*01": 7, "IGLJ3*02": 7}}, "partitions": [{"logprob": 0.0, "n_clusters": 3, "n_procs": 1, "partition": [["83cd33d783-igl", "24174ebdc9-igl", "da96f2c471-igl", "2d29c65222-igl", "8828e95dd5-igl", "f74e482a75-igl", "02c4dcf740-igl", "4e6de5d38d-igl"], ["3de3240f4c-igl"], ["94040b8e55-igl"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", ""], "reco_id": "e707c96016", "tree": "[&R] ((((((4e6de5d38d-igl:0.014385310579532198,c022154f42-igl:0.014385310579532198)gis:0.0004964074451995572,da96f2c471-igl:0.014881718024511137)bkm:0.010809544345950627,(83cd33d783-igl:0.006232474664558756,(8828e95dd5-igl:0.0038041522818052244,f74e482a75-igl:0.0038041522818052244)mos:0.002428322384959696)ags:0.019458787705903004)iqr:0.0006392791972150224,24174ebdc9-igl:0.026330541570324183)ahz:0.0017632421871908318,(0e191a1e72-igl:0.024227126438608457,(2d29c65222-igl:0.02305222313544712,02c4dcf740-igl:0.02305222313544712)efn:0.0011749032947779086)clt:0.003866657319568409)buv:0.001586348043447196)alp:0.0;", "unique_ids": ["83cd33d783-igl", "24174ebdc9-igl", "da96f2c471-igl", "2d29c65222-igl", "8828e95dd5-igl", "f74e482a75-igl", "02c4dcf740-igl", "4e6de5d38d-igl"], "invalid": false, "v_gene": "IGLV3-19*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 39, "mut_freqs": [0.033846153846153845, 0.033846153846153845, 0.027692307692307693, 0.027692307692307693, 0.036923076923076927, 0.043076923076923075, 0.052307692307692305, 0.046153846153846156], "n_mutations": [11, 11, 9, 9, 12, 14, 17, 15], "input_seqs": ["TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGCTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTCCTTGACCATCACTGGGGCTCACGCGGAGGATGACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCCGTGACTGTCGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTATTAGCAGAAGGCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACTGGCCCTCAGTGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGCAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACACACAGTCAGGATCACATGCCAAGGAGACTGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAACCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGGCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGAGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGGCCGTCCTCG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACACCCTCAGAGGCTTTTATGCAAGCTGGTACGAGCAGAAGCCAGGACAGCCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGGCCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTCACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGTTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTTCCTGACCATCACTGGGGCTCAGGCGGAGGATGACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCATATGCCAAGGAGACAGCCTCAGAAGCTATTGTGCAAGCTGGTACCAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGCCCTCAGGGTTCCCAGACCGATTCTCTGGCTCCAGCTCAGAAAACATAGCTTCCCTGACCATCACTGGGGCTCAGGCGGAGGATCACGCTGACAATTACTGTAACTCCCGGCACAGCAGTGGTAACCATGTGGTATTCGGCGCAGGGACCAAGCTGACCGTCCTAG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGCGACAGACAGTCAGGACCACATGTCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACGAGCAGAAGCCAGGACAAGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCGGAGCGATTCTCTGCGTCCAGCTCAGGAAAGACAGCTTCCTCGACCATCACTGGGGCTCAGGCGGAAGATGACGCTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGACAGACCAAGCTCACCGTCCTGG", "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACACACAGTCAGAATCACACGCCAAGGAGACTGCCTCAGGAGCTATTATGCAAGCTGGTACCAGCAGAAGTCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACGACCGGGCCTCAGGGGTCCCAGACCGATTCTTTGGCTCCAGCTCAGGAAACACCCCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGACTGACAATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGGCCGTCCTAG"], "naive_seq": "TCTTCTGAGCTGACTCAGGACCCTGCTGTGTCTGTGGCCTTGGGACAGACAGTCAGGATCACATGCCAAGGAGACAGCCTCAGAAGCTATTATGCAAGCTGGTACCAGCAGAAGCCAGGACAGGCCCCTGTACTTGTCATCTATGGTAAAAACAACCGGCCCTCAGGGATCCCAGACCGATTCTCTGGCTCCAGCTCAGGAAACACAGCTTCCTTGACCATCACTGGGGCTCAGGCGGAAGATGAGGCTGACTATTACTGTAACTCCCGGGACAGCAGTGGTAACCATGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 0, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true], "stops": [false, true, false, false, false, false, false, false], "paired-uids": [["83cd33d783-igh"], ["24174ebdc9-igh", "8828e95dd5-igl"], ["810f8f7056-igh", "810f8f7056-igk", "da96f2c471-igh"], ["2d29c65222-igh", "96f6ea6b59-igh", "96f6ea6b59-igk"], ["24174ebdc9-igh", "24174ebdc9-igl"], ["7bfd25e622-igh", "7bfd25e622-igk", "f74e482a75-igh"], ["02c4dcf740-igh", "a1f869b08f-igh", "a1f869b08f-igk"], ["475a17c3bd-igh", "475a17c3bd-igk", "4e6de5d38d-igh"]], "loci": ["igl", "igl", "igl", "igl", "igl", "igl", "igl", "igl"], "codon_positions": {"v": 258, "j": 294}}, {"has_shm_indels": [false], "qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "dd76478982", "tree": "[&R] ((88ea4d6f94-igl:-0.0,3de3240f4c-igl:-0.0)fpy:-0.0)cgn:0.0;", "unique_ids": ["3de3240f4c-igl"], "invalid": false, "v_gene": "IGLV2-14*04", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ3*02", "cdr3_length": 39, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "naive_seq": "CAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGATGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCTGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCAGCAGCACTCTCAGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[]], "v_3p_del": 1, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "CA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["3de3240f4c-igh", "99ec3a50a4-igh", "99ec3a50a4-igk"]], "loci": ["igl"], "codon_positions": {"v": 267, "j": 303}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "da8c9d16ae", "tree": "[&R] (94040b8e55-igl:-0.0)bgr:0.0;", "unique_ids": ["94040b8e55-igl"], "invalid": false, "v_gene": "IGLV3-1*01", "d_gene": "IGLDx-x*x", "j_gene": "IGLJ2*01", "cdr3_length": 33, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG"], "has_shm_indels": [false], "naive_seq": "TCCTATGAGCTGACTCAGCCACCCTCAGTGTCCGTGTCCCCAGGACAGACAGCCAGCATCACCTGCTCTGGAGATAAATTGGGGGATAAATATGCTTGCTGGTATCAGCAGAAGCCAGGCCAGTCCCCTGTGCTGGTCATCTATCAAGATAGCAAGCGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACAGCCACTCTGACCATCAGCGGGACCCAGGCTATGGATGAGGCTGACTATTACTGTCAGGCGTGGGACAGCAGCACTGTGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAG", "duplicates": [[]], "v_3p_del": 2, "d_5p_del": 1, "d_3p_del": 0, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["94040b8e55-igh", "997456da00-igh", "997456da00-igk"]], "loci": ["igl"], "codon_positions": {"v": 258, "j": 288}}]}
test/paired/new-results/test/simu/igh.yaml CHANGED
@@ -1 +1 @@
1
- {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-18*01": "CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-46*03": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCTAGAGA", "IGHV1-69*04": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-8*01": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG", "IGHV2-5*02": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGAC", "IGHV2-70*01": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-11*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV3-15*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA", "IGHV3-20*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGTGTGGTACGGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGGCATGAGCTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGAGTGGGTCTCTGGTATTAATTGGAATGGTGGTAGCACAGGTTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCCTTGTATCACTGTGCGAGAGA", "IGHV3-21*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-23*01": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA", "IGHV3-30*04": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-33*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-48*02": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGACGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-66*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCAGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-7*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-74*01": "GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTAGTTCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACTGGATGCACTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGTGTGGGTCTCACGTATTAATAGTGATGGGAGTAGCACAAGCTACGCGGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACACGCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCAAGAGA", "IGHV3-9*01": "GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA", "IGHV4-31*03": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-39*01": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA", "IGHV4-4*02": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-59*11": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTCACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-20*01": "GGTATAACTGGAACGAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD1-7*01": "GGTATAACTGGAACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD3-10*01": "GTATTACTATGGTTCGGGGAGTTATTATAAC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-22*01": "GTATTACTATGATAGTAGTGGTTATTACTAC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD4-17*01": "TGACTACGGTGACTAC", "IGHD5-24*01": "GTAGAGATGGCTACAATTAC", "IGHD6-13*01": "GGGTATAGCAGCAGCTGGTAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ1*01": "GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "IGHJ2*01": "CTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "IGHJ3*02": "TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "IGHJ4*02": "ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ5*02": "ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ6*02": "ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"}}, "cyst-positions": {"IGHV1-69*04": 285, "IGHV3-74*01": 285, "IGHV2-5*02": 288, "IGHV4-59*11": 282, "IGHV3-9*01": 285, "IGHV1-2*02": 285, "IGHV3-33*01": 285, "IGHV3-21*01": 285, "IGHV2-70*01": 288, "IGHV1-18*01": 285, "IGHV4-31*03": 288, "IGHV3-7*01": 285, "IGHV3-11*01": 285, "IGHV3-30*04": 285, "IGHV3-66*01": 282, "IGHV1-8*01": 285, "IGHV4-39*01": 288, "IGHV1-46*03": 285, "IGHV3-23*01": 285, "IGHV3-15*01": 291, "IGHV3-20*01": 285, "IGHV3-48*02": 285, "IGHV4-4*02": 285}, "tryp-positions": {"IGHJ4*02": 14, "IGHJ2*01": 19, "IGHJ3*02": 16, "IGHJ6*02": 29, "IGHJ5*02": 17, "IGHJ1*01": 18}}, "partitions": [{"logprob": 0.0, "n_clusters": 10, "n_procs": 1, "partition": [["6728f9fb1f-igh", "25beda54e8-igh", "a385b6b9c0-igh", "293677779b-igh", "539dc7162b-igh", "7fc27267b4-igh", "c074eb0544-igh", "5414307e18-igh", "1dc717a47d-igh", "fa79e38212-igh"], ["3590a73b2b-igh", "486333046a-igh", "1bb77dbdd8-igh"], ["5b83db58bc-igh", "8c82b5df7c-igh"], ["dde37df0f3-igh", "4e698cd55b-igh"], ["6daaa9b771-igh", "a32678cdd4-igh"], ["4879a2a0d7-igh", "7777388536-igh", "69e29aff11-igh", "c449e7d496-igh", "b8dd0bbe5b-igh", "831950bd07-igh", "1df0b0d259-igh", "2bbe5f9b28-igh", "9f7c316b7a-igh"], ["f5dedfcd67-igh", "5cb34a1703-igh", "053a8abb6c-igh", "d3edbb8447-igh", "031d868683-igh", "1b28490bf6-igh"], ["b68b8d0fe2-igh", "de762b8ce4-igh", "552c9f1e08-igh", "c8a03324cc-igh", "d068457847-igh", "0bfaf8b4b1-igh", "8c03b80be0-igh", "f4ebbe68a7-igh", "922ea4413e-igh", "a55e058517-igh", "383777b7c5-igh", "3a41497d91-igh"], ["898ab41392-igh", "5d404a8547-igh", "fd0c4f0f17-igh"], ["ebb52c305d-igh", "652adbce26-igh", "6d2eb72d4b-igh", "11f41b5f10-igh", "504e3941e6-igh", "19e0f0b170-igh", "fa02aeb02e-igh"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", ""], "reco_id": "8a9d39afe0", "tree": "[&R] ((((5414307e18-igh:0.051727505643716934,1dc717a47d-igh:0.051727505643716934)acj:0.04941546454409991,(((c074eb0544-igh:0.09120177282478034,(fa79e38212-igh:0.08550632794623421,(84b9b0a5db-igh:0.08238182261264146,293677779b-igh:0.08238182261264146)btu:0.0031245053543367245)abi:0.005695444845544361)qtz:0.00526069928398987,25beda54e8-igh:0.09646247208519754)ltu:0.0006698752846485348,(6728f9fb1f-igh:0.09560769828095368,((539dc7162b-igh:0.0229632379722416,7fc27267b4-igh:0.0229632379722416)ioz:0.05593470449188649,762f4ed65b-igh:0.07889794247355719)ahm:0.016709755779109266)fop:0.001524649115293797)lnz:0.004010622818442246)oxy:0.0018890356318499828,a385b6b9c0-igh:0.10303200582108119)dhn:0.011039379660511833)akt:0.0;", "unique_ids": ["6728f9fb1f-igh", "25beda54e8-igh", "a385b6b9c0-igh", "293677779b-igh", "539dc7162b-igh", "7fc27267b4-igh", "c074eb0544-igh", "5414307e18-igh", "1dc717a47d-igh", "fa79e38212-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.10649350649350649, 0.09090909090909091, 0.10649350649350649, 0.1012987012987013, 0.09350649350649351, 0.09090909090909091, 0.09350649350649351, 0.08831168831168831, 0.0987012987012987, 0.11168831168831168], "n_mutations": [41, 35, 41, 39, 36, 35, 36, 34, 38, 43], "input_seqs": ["CAGGCGGAGCTGGTGCTGTCTGGGGAAGGCGTGGTCCAGCCCGGGAGACCCCTGAGGCTCTCCTGTACAGCGCCTGGATTCACCCTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTAGAGTATGTGGCAATTACTTGGTATAATGGAAATAATAAATACTATGCAGACTCCGTAAAGAGTCGATTCGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCTTACGTTCGCGTAAATTCATGTTGTGCCGTACTACTACTACGGTGTGGACGTCTGGGGCCTAGGGACCACGGTCATTGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGATCCAGCCTAGGAAGTCCCTGAGACTCTCCTGTGCACCGCCCGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGTTCCAGGCAAGCGGCTGGAGTGGGTGGCATTTACATGGTATGATGGAAGTAATAAATACTACGCAGACTCCGTCAAAAGTCGATTCACCATCTCCAGAGACAATTTAAAGAACACGCTGTATCTGCAAATGAGCAGCCTGAGAGCCGAGTACACGGGTGTGCATTACTGTGCGAGAGAGATTTCGTTCGGATGAGTTAACGTTCCTCGTTACTACTACTACGGTATGGCCGTCTGGGGCCAGGGGACCACGGTCACGGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTCAGACTCTCCTGTGCAGCGTCTTAATTCACCTTCGGTCGCTATGGCATGCACTGGGTCCGCCTAGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAATTCCATGGTATGATGGAAATAATAAATACTATGCAGACTCCTTGAAGGGTCCGTTCACTATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCGTGAGAGGCGAGGTCACGGCTGTGTCTTACTGTGCGAGGGAAATTGTATTTAAGCGCGTTATTGTTCTCTTTTACTACTACTACCGTATGGACGCCTGGGGTCAAGGAACCATGGTCACCGTCACCTCAC", "TAGGTGCAGCTGGTCGTGTCTGTGGGAGGCGTGGTCCAGCCTGGGAGCTCCGTGACACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGTTATGGCATGCACTGGGTCAACCAGGCTCCAAGCAAGGGGCTGGAGTGGGTGACAATTACATGGTAAAATGGGAGCGATAAATACTATGCAGACTCCGTGAAGAGTCGATTCACCATCTCCAGAGAGAATTCCAAGAACACATTGTATCTGCAAATCAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGCATTTATTCTGGCGAGGTGCTGTTATTCTTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCGCGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGCCGATGCGTGGTGCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGACTCCCCTTCAGTACCTATGACATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGTCTGGAGTGGGTGGCAATTACATGGTATAATGGAAATAATTAATCCTATACAGACTCCGTGAAGAGTCGGTTCACCGTCTCCAGAGACAATTCCAAGAACACGCTGTATCTCCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACGTTCGGGCCATTTATTTTTCTATCCTACTTCTACTACGGTATCGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTGCTCAC", "CAGGTGCAGCTGGTGGTGTCTGGGCGAGGCGTGGTGCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCTTCTGGACTCCCCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGTCTGGAGTGGGTGGCAATTACATGGTATAATGGAAATAATTAATCCTATGCAGACTCCGTGAAGAGTCGGTTTACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTCCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGACTACATTTGAGCGACATATTCTTTTGTCCTACTTCTACTACGGTGTCGACGTCTGGGGCTAAGGGACCACGGTCACCGTCTGCTCAC", "CAGGTGCAGCTGGTGGTGTCTGGGGGCGGCGTGGTCCAGCCTGGAAGGTCCCTCATACTCTCCTGTGCAGTGTCTTGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTAGGTGGCAATTACATGGTTAGATCGAAGTAGTAAATACTGTGCACACTCCGTGAAGAATCGATTCACCATCTCCAGAGACAATTCCAAGATAACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTATGTATCACTGTGCGAGAGACCTCTCATTCGTGCGAGTTATCTTTCTACTTTAGTACTACTACGGTATGGACGTTTGGGGCCAAGGGACCACGGTCACCCTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGCTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGAAGCTATAGGATGCACTGGGTCTGTCAGGCTCTACGCAAGGTGCTGGAGTGGGTGGCGATTACATGGTATGATGGAAGTAATATATACTGTGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGAGGCAACTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAAGACACGGCTGTGTATTACTGTGCGAGAGAAATTACACTGGGCTGGATCATTGCTCTATCTTACTACTACTACGGTATGGACCTCTGGGGCCAAGGGACCACGGTCTCCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGACGTGCTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTAGATTCACCTTCAGTGGCTATGGCATGCACTGGGTCCGTCAGGCTCCAGACAAGGTGCTGGAGAGGGTGGCCATCACATGGTATGATGGAAGTAATATATACTATGCAGACTCTGTGAAAGGTCGATTCACCATCTCCAGAGGCAACTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGCACCGAAGACACGGCTATGTATTACTGTGCGAGAGAGAATCAATTCGGCTCCATCATCGTTTTGGCTTACTACTACTACGGTATGGATGTCTGGGGCCAAGGGACCACGGTCTCCGTCTCCTCAG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAGGCGTGGTTCAGCCCGGGAGGTCCTTCAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGTTATGGCATTCACTGGTTCCGCTAAGATCCAGGCAAGGGGCTGGAGTAGGTAGTAATTACATGGTAAGATGGAAGTGATAAATAGTATGTAGACTCCGTGAAGAGTCGATTCACCATTTCCAAAGACAATTCCAAGAACACGTTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGCCACGGCTATGTATTACTGTGCGAGAGAGATTTCATTCGTGCAATGTATTCTTATTATTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACTACAGTCATCGTCTCCTCGG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "T", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, true], "stops": [true, true, true, true, true, true, true, false, false, true], "paired-uids": [["6728f9fb1f-igk"], ["25beda54e8-igk", "5d404a8547-igh", "5d404a8547-igl"], ["a385b6b9c0-igk"], ["293677779b-igk"], ["11f41b5f10-igh", "539dc7162b-igk"], ["45de550151-igl", "7fc27267b4-igk"], ["6d2eb72d4b-igh", "c074eb0544-igk"], ["5414307e18-igk"], ["1dc717a47d-igk"], ["fa79e38212-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", "", ""], "gl_gap_seqs": ["", "", ""], "indel_reversed_seqs": ["", "", ""], "reco_id": "ca482b4daf", "tree": "[&R] (((1bb77dbdd8-igh:-0.0,486333046a-igh:-0.0)cvy:0.0,3590a73b2b-igh:-0.0)pvx:-0.0)bhv:0.0;", "unique_ids": ["3590a73b2b-igh", "486333046a-igh", "1bb77dbdd8-igh"], "invalid": false, "v_gene": "IGHV2-5*02", "d_gene": "IGHD1-20*01", "j_gene": "IGHJ1*01", "cdr3_length": 51, "mut_freqs": [0.0, 0.0, 0.0], "n_mutations": [0, 0, 0], "input_seqs": ["CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false, false], "naive_seq": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "v_3p_del": 4, "d_5p_del": 0, "d_3p_del": 2, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "ACCGGA", "dj_insertion": "CTG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [true, true, true], "stops": [false, false, false], "paired-uids": [["3590a73b2b-igk"], ["486333046a-igk"], []], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 336}}, {"has_shm_indels": [false, false], "qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "8ff5ec4520", "tree": "[&R] ((70cc01a590-igh:-0.0,(5b83db58bc-igh:-0.0,8c82b5df7c-igh:-0.0)lov:0.0)iqv:-0.0)ehv:0.0;", "unique_ids": ["5b83db58bc-igh", "8c82b5df7c-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["504e3941e6-igh", "504e3941e6-igl", "5b83db58bc-igk"], ["8c82b5df7c-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "6564755f20", "tree": "[&R] ((4e698cd55b-igh:-0.0,dde37df0f3-igh:-0.0)vwy:-0.0)hnz:0.0;", "unique_ids": ["dde37df0f3-igh", "4e698cd55b-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCTTCGCA", "dj_insertion": "TGCAA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["dde37df0f3-igk"], ["4e698cd55b-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": ["", ""], "gl_gap_seqs": ["", ""], "indel_reversed_seqs": ["", ""], "reco_id": "b2144fab8e", "tree": "[&R] ((a32678cdd4-igh:-0.0,6daaa9b771-igh:-0.0)gjt:-0.0)bfo:0.0;", "unique_ids": ["6daaa9b771-igh", "a32678cdd4-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.0, 0.0], "n_mutations": [0, 0], "input_seqs": ["CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [true, true], "stops": [false, false], "paired-uids": [["3a41497d91-igh"], ["a32678cdd4-igk", "fd0c4f0f17-igh", "fd0c4f0f17-igl"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTGACTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCAGTTGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "gl_gap_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACT..CTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCA..TGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "indel_reversed_seqs": ["", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", ""], "reco_id": "182e588062", "tree": "[&R] ((((c449e7d496-igh:0.0018889927671564904,2bbe5f9b28-igh:0.0018889927671564904)chv:0.04094443655482864,((1df0b0d259-igh:0.03426649301948991,4879a2a0d7-igh:0.03426649301948991)dgx:0.0012946586421423644,b8dd0bbe5b-igh:0.03556115166163228)ixz:0.007272277663719897)syz:0.011342679525079375,(7777388536-igh:0.05342622613191552,((69e29aff11-igh:0.004270451329474284,831950bd07-igh:0.004270451329474284)ily:0.0038833328054791103,9f7c316b7a-igh:0.008153784132548364)cdf:0.04527244198974702)kuw:0.0007498827204400651)jrx:0.0006929575419261174)emy:0.0;", "unique_ids": ["4879a2a0d7-igh", "7777388536-igh", "69e29aff11-igh", "c449e7d496-igh", "b8dd0bbe5b-igh", "831950bd07-igh", "1df0b0d259-igh", "2bbe5f9b28-igh", "9f7c316b7a-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD5-24*01", "j_gene": "IGHJ4*02", "cdr3_length": 51, "mut_freqs": [0.07901907356948229, 0.04087193460490463, 0.04087193460490463, 0.07084468664850137, 0.05449591280653951, 0.03814713896457766, 0.05994550408719346, 0.07084468664850137, 0.051771117166212535], "n_mutations": [29, 15, 15, 26, 20, 14, 22, 26, 19], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACTGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCTCTGGATTCGCCTTTAGCAGCTATGCCATGGGCTGGGTCCGCCAGGCTCCAGGAAAAGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGCCTGGTTCGCCATCTCCAGAGACAATTCCAGGAACACCCTATATCTGCAAATGGACAGCCTGAGAGCCGAGGAGACGGCCGTATATTACTGTGCGCACGGATGGCCTGCGCTTAGGCATGGTTACAGTTTTGACTACTGGGGCCAGGGAATCCTGGTGACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGCGGAGGCTTGGAACGGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTCCACCATCTCCAGAGACAATTCCAAGAACAGGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCCGTATATTACTGTGCGGTTGCATGGGGAGTGGGTACAGATCGCTACAATTTTGAATACTGGGGCCAGGGAACCCTGGTGACCCTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTGACTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGGCAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGAGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTTCAGCTTGGGGGGTCCCTGAGAATCTCCTCTGTAGCCTCTGGATTCGCCTTTGGCAGCTATGCCATGAGCTGGGTCCGCCAGCTTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTGCGCAGACTCCGTGAAGGCCCGGTTCACCATCTCCAGAGACGATTCCAAGAACACGCTGTATATGCAAATGAACAGCCTGAGAGCCGAGGACACCGCCGTATATTACTGTGCCAGCGGATCGATTGCGCGTAGGGATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGACTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGGGGCTTGGTACAGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCGCTGGATTCGCCTTTAGCAGCTATCCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGTCTCAGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGGGCCGAGGACACGGCCGTATATTACTGTGCGGGTGGATTGGCTGCGCCTAGATATACCTTCAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCAGTTGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGCTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGATGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACTGCTTGGGGGGTCCCTGAGACTCTCCTCTGTAGCCTCTGGATTCGCCTTTAGCACCTATGGCATAAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTTGCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCATATATTACTGTGCAGGTCGATGGGATGCGCTTAGACATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGCTCACCGTTTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTTCAGCTTGGGGGGTCCCTGAGAATCTCCTCTGTAGCCTCTGGATTCGCCTTTGGCAGCTATGCCATGAGCTGGGTCCGCCAGCTTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTGCGCAGACTCCGTGAAGGCCCGGTTCACCATCTCCAGAGACGATTCCAAGAACACGCTGTATATGCAAATGAACAGCCTGAGAGCCGAGGACACCGCCGTATATTACTGTGCCAGCGGATCGATTGCGCGTAGGGATGGTTACAATTTTGACTACTGGGGCCAGGGAATCCTGGTCACCGACTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGGGGCTTAGTACACCCTGGGGGGTCTCTGAGACTCTCCTATGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCACGCTCCAGGGAAGGGGCTGGAGTGGGTGTCAGTTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCAGATAGACGGGGAGCGTGTGGGGATTGCTATAATTTTGACTACTGGGGCCACGGAACCCTGGCCACCGTCTCCTCAG"], "has_shm_indels": [false, false, true, false, false, true, false, false, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 6, "d_5p_del": 0, "d_3p_del": 3, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGATGGGGAGCGC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [true, true, false, true, true, false, true, true, true], "stops": [false, false, true, false, false, true, false, false, false], "paired-uids": [["4879a2a0d7-igk"], ["7777388536-igk"], ["1bd9242383-igl", "69e29aff11-igk"], ["c449e7d496-igk"], ["b8dd0bbe5b-igk"], ["831950bd07-igk"], ["1df0b0d259-igk"], ["2bbe5f9b28-igk"], ["9f7c316b7a-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 333}}, {"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "reco_id": "d217d13f25", "tree": "[&R] ((053a8abb6c-igh:0.028893272857359993,(((5cb34a1703-igh:0.0025010348959690416,f5dedfcd67-igh:0.0025010348959690416)aik:0.008113407000401307,(2b1422c0aa-igh:0.00663818706748973,39fc72ec75-igh:0.00663818706748973)der:0.003976254828880618)aem:0.014821658745573129,((1b28490bf6-igh:0.020698778253184325,d3edbb8447-igh:0.020698778253184325)bfo:0.00031948954599180933,031d868683-igh:0.021018267797272252)mqw:0.004417832843551295)mtv:0.0034571722142965862)vwz:0.0007868589419449512)hkw:0.0;", "unique_ids": ["f5dedfcd67-igh", "5cb34a1703-igh", "053a8abb6c-igh", "d3edbb8447-igh", "031d868683-igh", "1b28490bf6-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ4*02", "cdr3_length": 42, "mut_freqs": [0.025139664804469275, 0.030726256983240222, 0.030726256983240222, 0.027932960893854747, 0.027932960893854747, 0.013966480446927373], "n_mutations": [9, 11, 11, 10, 10, 5], "input_seqs": ["CAGGTCCAGCTGGTGCAGTCTGGGACTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCCGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGAAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCTTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTGTCGCAGCCATATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGACTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCCGCCGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGAAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGTACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCTTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTGTCGCAGCCATATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGCAGGTCTCCTGCAAGACTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGAGAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGTACAGAAGTTCCAGGGCAGAGTCACGATTACTGCGGACAAATCCACGAGCACACCCTACATGGAGCTGAACAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTATGAGGTTATCGCAGGCAGATAGTTTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAGGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGATATAGCAAACTACGCACCGAAGTTCCAGGGCCGAGTCACGGTTACCGCGGACAAATCCACGAGCACAGCCTAGATGGAGCTGAGCAGCCTGACATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCCCAGGCACATACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCCCCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGTTCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCTAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATTATCGCAGATACATAATTCGTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCGCCTTCAGCAGCTATGCTATCAGCTGGATGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGTACGTACTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 24, "d_3p_del": 7, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "G", "dj_insertion": "CAGGCACATAGTTCC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, true, true, false], "paired-uids": [[], ["5cb34a1703-igk"], ["053a8abb6c-igk"], ["19e0f0b170-igh", "19e0f0b170-igl", "d3edbb8447-igk"], ["031d868683-igk"], ["1b28490bf6-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 324}}, {"has_shm_indels": [false, false, false, false, true, false, false, false, false, false, true, true], "qr_gap_seqs": ["", "", "", "", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGG.GGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "", "", "", "", "", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTC.CCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATATATACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", "", "", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTAT...TACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "", "", "", "", "", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "reco_id": "e707c96016", "tree": "[&R] (((((3a41497d91-igh:0.03701060555844492,d068457847-igh:0.03701060555844492)gju:0.02809087417206145,45eb339259-igh:0.06510147974734387)gko:0.013275047186165083,(552c9f1e08-igh:0.07350469263200017,de762b8ce4-igh:0.07350469263200017)bej:0.004871834288600029)uwz:0.023224487793366392,((c8a03324cc-igh:0.012804551985145862,922ea4413e-igh:0.012804551985145862)gqw:0.08472147739517823,((8c03b80be0-igh:0.05656827773700887,((f4ebbe68a7-igh:0.007938731111116483,383777b7c5-igh:0.007938731111116483)dhk:0.0013363399093115989,((0bfaf8b4b1-igh:0.007172912545146474,a55e058517-igh:0.007172912545146474)guv:0.001674235359903548,d8138c32a6-igh:0.00884714790448877)ijy:0.000427923116668937)hpz:0.04729320671938705)ovz:0.03695216953191156,b68b8d0fe2-igh:0.09352044729137046)hko:0.004005582083902381)dlt:0.00407498534542876)htz:0.04714040889430082)emp:0.0;", "unique_ids": ["b68b8d0fe2-igh", "de762b8ce4-igh", "552c9f1e08-igh", "c8a03324cc-igh", "d068457847-igh", "0bfaf8b4b1-igh", "8c03b80be0-igh", "f4ebbe68a7-igh", "922ea4413e-igh", "a55e058517-igh", "383777b7c5-igh", "3a41497d91-igh"], "invalid": false, "v_gene": "IGHV3-11*01", "d_gene": "IGHD7-27*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1440443213296399, 0.11080332409972299, 0.13573407202216067, 0.13850415512465375, 0.1440443213296399, 0.19667590027700832, 0.15512465373961218, 0.1883656509695291, 0.12742382271468145, 0.19667590027700832, 0.19390581717451524, 0.15512465373961218], "n_mutations": [52, 40, 49, 50, 52, 71, 56, 68, 46, 71, 70, 56], "input_seqs": ["TAGGTGCAGGTGATGGAGTTTAGGGGCGGCTTGGTCAAGCCTGGAGGGTCCGTGGAACTCTCCTGTGCACCTTCTACATTCACCTTCGGCGAGCACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGACTGAGTTTCACACATTAGTAGTAGCGGTACTACCGTATACTACGCAAACTCCGTGAAGGGCCGATTCACCATCTCTAGAGACAACGCCAAGAAGTCACTGCATCTGCCAATGAACAGCCTCGGCGCCGAGGACACGCCCGAGTATTGCTGTGCGAGGGACTACTTTATGTAAACCTTCTCCTTTGAGCACTGGGGCCAGGGAACCCTGGTCACCGTGTCCCCAG", "CAGTTGCAGCTGGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTAGAGGGTCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGGGCTGGATCCGCCAGGCTTCAGGGAAGGGGCTGGACTGGGTTTCACACATTAGTACTAGCGGTAGTACCGTATATTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCTAGGACAACGCCAAGAACTCACTGTATCTGCCAATGAACAGCCTGCGTGCGGAGGACACGCCCGTGTATTACTGTGCGAGAGATTTGTCTGATCTGGTTTCCCCCTTTGAGTACTGGGGCCGGGGAGCCCTGGTCACCGTGTCCTCAG", "CAGGTGCAGCTGGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGGTCCTTGAGACGCTCCTGTGCAGCGTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTAGACTGGGTTTCATACATTAGTACTAGCGGTCGTACCATATACTTCGCAGACTCTGTGAAGGGCCGATTCACAATCTTCAGGCGCAACGCCAAGAACTTACTGTATGTGCCAATGAACAGCCTGGGCGCGCAGGACACGCCCGTGTATTACTGTGCGAGCGATTAGTGTGACTTGTCTTTGACCTTTGAGTGCTGGGGCCGGGGAGCCCTGGTCGCCCTGTCTTCAG", "CAGGTGCAGCTGGTGCAGTCTGGGGGCGGCTTGGTCAAGCCTCGAGGGCCCGTAAGACTCTCCTCTGCAGCCTCTGCATTTACCTTCGGTGATCACTTCATGAGCTGGATCCGCCAGGCTGCAGGGAAGAGGGTGGACTGGGTTTCACACATTAGTGGTAGCGGTAGTGCCGTATAGTACGCAGAATCTGTGAAGGGCCGATTCACGATCTCCAGGGACAACGCCAAGAACTTACTGTACCTGCCAATGAACAGCCTGGCAGCCGAGAACACGCCCGTCTATTACTGTGCGAAAGATTGTTTTATCTGTCGCTTCGGCTTTGAATGCTGGGGCCAGGGAACCCTGGCCACCGTGTCCTCAG", "CAGGTGCAGCTCGTGGAGTCTGGGGGCGGCTTCGTCAAGCCTGGAGGATCCCTGAGACGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACTACATGAGCTGGATCCGCCAGACTCCCGGGAAGGGGCTGCACTGCGTTTCACACATTAGCACTAGCGGGGTACCATATACTACGCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGATACAGCGCTAAGAGCTCACTGTATCTGCCAATGATCAGCCTGGGTGCGGAGGACACGCCCGTGTATTACTGTCCGAGAGAGTTTCCTGATTGAAACGCATCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTCACCGTGTCTTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGGTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCACCTTCGATGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTGCCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGAATGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTGTAGCTGGTGGAGTCTAGGGGCGGCTTGGTTAAGCCTGGAGGGTTCGTGAGACTCTCCTCTGCAGCCTCTGCATTTACCTTCGGTGATTACTACATGAGCTGGATCTGCCACGCCTCAGGGTCGGGGTTGGACTGGGTTTCGCTCATTAGTAATAGCGGTAGTACCATATACTACGCAAACTCTGCGAAGGGCCGATTGACCATATCCAAGGACGACGCCAAAAACTCACTGTATCTGTTAACAAATAGCCTGGGCGCCGAGGCCACGCCCGTGTATTACTGTGCGAGAGATCTGATTACCTCCTTTTTCTCCTTTGGGCACTGGGGCTAGGGAACCCTGGTCACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTTTGCACCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAGAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGACTGAATTGCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTGCAGCTGGTGCAGTCTGGGGGCGGCTTGGTCAAGCCTGGAGGGCCCGTAAGACTCTCCTGTGCAGTCTCTGCATTTACTTTCGGTGATCACTTCATGAGCTGGATCCGCCAGGCTGCAGGGAAAAGGCTGGACTGGGTTTCACACATTAGTGGTAGCGGTAGTGCCGTATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTTACTGTACCTGCCAATGAACAGCCCGGGAGCCGAGAACACGCCCGTCTATTACTGTGCGAAAGATTAGTTTGTCTGTCCCTTCGCCTTTGAATTCTGGGGCCAGGGAACCCTGGCCACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGGTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCGCCCTTTGCATTCACCTTCGGTGATTACTAAATGAGCTACATCTGCCACACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTAACCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGACGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CGGATGCAGCTGGTGGAGTCTAGGGGCGGCTCGGTTAAGCCTGGAAGGTCCGTGAGACTCTCCTCTGCACCCTTTGCATTCCCTTCGGTGATTACTAAATGAGCTACATCTGCCTCACCTCAGGCTCGGGGCTGGACTGGGGTTCGCTCATTGGTAGTAGCGGTAGTACCATATCCTACGCACACTCTGCGAAGGGCCGATTCACCGTATCCAAGAACAACGCCAAAAACTCACTGTATCTGCCAACGAGCAGCCTGAGCGCCGAGAACACGCCCGTATATTACTGTGCAAGAGAGGACTGAATTTCCTCTTTTTGCTTTGAGTACTGGGGCTAGGGAACACTGGTAACCGTGTCCTCAG", "CAGGTACAGCTCGTGGAGTCTGGAGGCGGCTTCGTCAAGCCTGGAGGGTCCCTGAGATGCTCCTGTGCAGCCTCTGCATTCACCTTCGGTGATCACGACATGGGCTGGATCCACCAGACTCCAGGGAAGGGGCTGCACTGGGTTTCACACATTAGTACTAGCGGTGGTACCATATACTACGCAGACTCTGTGAAGGACCGGTCCACCATCTTCAGGTACAACGCTAAGATCTCACTGTATCTGCCAATGAACAGCCTGGGTGCGGAGGACACGCCCGTGTATATATACTGTCCGAGAGACTTACATCGTTGAAATACTTCCTTCGAGTGCTGGGACCGGGGAGCCCTGGTTACCGTGTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 0, "d_3p_del": 1, "j_5p_del": 4, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCAGC", "dj_insertion": "CTGCTC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, false, true, true, true, true, true, false, true], "stops": [true, true, true, true, true, true, true, true, true, true, true, true], "paired-uids": [["b68b8d0fe2-igl"], ["de762b8ce4-igl", "ebb52c305d-igh"], ["552c9f1e08-igl"], ["898ab41392-igh", "898ab41392-igl", "c8a03324cc-igl"], ["d068457847-igl"], ["0bfaf8b4b1-igl"], ["8c03b80be0-igl"], ["f4ebbe68a7-igl"], ["922ea4413e-igl"], ["a55e058517-igl"], ["383777b7c5-igl"], ["6daaa9b771-igh"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAG.....GGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTG..................AGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", ""], "gl_gap_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", ""], "indel_reversed_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAGCCTTGGGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", ""], "reco_id": "dd76478982", "tree": "[&R] (((fd0c4f0f17-igh:0.02517168473201808,5d404a8547-igh:0.02517168473201808)ady:0.08839082944957491,898ab41392-igh:0.11356251419355307)qtx:0.04491930606482552)ivw:0.0;", "unique_ids": ["898ab41392-igh", "5d404a8547-igh", "fd0c4f0f17-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1523545706371191, 0.11911357340720222, 0.13573407202216067], "n_mutations": [55, 43, 49], "input_seqs": ["GAGGTGCGGCTGTCAGAGTCCGGGGGAGGCTTCCCACAGGGGGTCCCTGAGACTCTCGTGTCCAGCCTCTGGATTCATTTTTAGCAGCCATGACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTTGAGTGGGTCTCACCTATTAGTGGTAGTGATAGTAGCACATGTTACGCAGGCTCCGTCAAGGACCGGTTCACCATCTCCAGAGACAATTCCAAAAAGACACTGTATCTACAAATGAACAGCTTACGCGCTGAGGACTCGCTCGTTTATTACTGTGCAAAAGGAGCTTGGCCCTAGCTATGTTGCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCTTCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCTCGGGGTTCCCTGAGACTTTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGAGTGGTAGTGGTGATAACACATGGTACGCAGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAGCACACGGCCGTATATTGCTGTGCGATAGATTTGCGGGTCTTCGTGATTTAGTTTGAGTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG", "GAGGTGCAGGTGTTAGCGTCTGCGGAAGGCTTGGTACAGCCCCGGGGTTCCCTGAGACTCTCGTGTCCAGCGTCTGCGTTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGCGGTGATAACACATGGTACGCGGACTCCGTGAAGGACCGGTTCATCATCTCCCGAGACAATTCCAAGAAGACACTGTATCTGCAAATGAACAGCCTGAGCCCCGAACACACAGGCGTATATTGCTGTGCGATAGATTTATAGGTTTTGGATTTTTGGTTTGACTACTGGCGCCAGGGAACCCTAGTCACCGTCTCCTCAG"], "has_shm_indels": [true, true, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CTCAGCAC", "dj_insertion": "TGAAT", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false], "in_frames": [false, true, true], "stops": [true, true, true], "paired-uids": [["898ab41392-igl", "c8a03324cc-igh", "c8a03324cc-igl"], ["25beda54e8-igh", "25beda54e8-igk", "5d404a8547-igl"], ["a32678cdd4-igh", "a32678cdd4-igk", "fd0c4f0f17-igl"]], "loci": ["igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"has_shm_indels": [false, false, false, false, false, false, true], "qr_gap_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCT........TGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "gl_gap_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTATCCGCACTAACTGGAACTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["", "", "", "", "", "", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "reco_id": "da8c9d16ae", "tree": "[&R] (((((fa02aeb02e-igh:0.032336570644115506,a9c9c3afba-igh:0.032336570644115506)grs:0.05910535130894349,(((652adbce26-igh:0.02102087205164989,45de550151-igh:0.02102087205164989)arx:0.034429487050056995,1bd9242383-igh:0.05545035910170689)eqt:0.01933696510731599,(11f41b5f10-igh:0.04164328633318094,6d2eb72d4b-igh:0.04164328633318094)aiv:0.033144037875841935)eku:0.016654597751542086)gyz:0.0018506930933334246,(19e0f0b170-igh:0.07848566084723978,504e3941e6-igh:0.07848566084723978)oqr:0.014806954187893679)nyz:0.016703069278684802,ebb52c305d-igh:0.10999568429880632)efh:0.0040757011599203835)gko:0.0;", "unique_ids": ["ebb52c305d-igh", "652adbce26-igh", "6d2eb72d4b-igh", "11f41b5f10-igh", "504e3941e6-igh", "19e0f0b170-igh", "fa02aeb02e-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD1-7*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1523545706371191, 0.09695290858725762, 0.13019390581717452, 0.12188365650969529, 0.10526315789473684, 0.0886426592797784, 0.11080332409972299], "n_mutations": [55, 35, 47, 44, 38, 32, 40], "input_seqs": ["CAGGTCCAGCTGGCGCACTGTGGGCCTGAGGTGAAGAACCCTGGCTCCTCGCTAAAACTCTCCTGCAAGGCTTCTGGAGGCACCTCCACCAGCTGTGCTGTCAACTGGGAGCGACAGGCGCCTGGACAAGGGCTTGAATGGATGGGAAGGATCATCCCTATGGTTTGCATAGCACACTACGCACAGAAGTTGCCGGCCACAGTCACGATTACCGCGAACAAATCCACGACCACAGCCTACATGGGGCTGAGCAGCCTGAGATTTAAGGACACGCCCGTCTATCACTGTACCAGAGAGCTTGTCTTCCGATACTGGATACCATTCTACTGGGTCCAGGGAACCCTGGTCAGCGTCTCCTCAG", "CAGGTCCAGCTGGTGCATTCTGGGGCTGAGGTGAAGAAGCCTAGGTCCTCGGTGAGGGTCTCCTGCAGGGCTTCCGCAGGCATCTTCAGCAGCTATGCTGTCAGCTGAGTGCGACAGGCTCCTGGACAAGGGCTTGAGTGGATGGGAGAGATCATCCCTATCCTTGGTATAGCAAACTACGCACAAAAGCTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAACTGAGCAGCCTGTGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGACATTACACCCGCCGATTGATTTGTTCTCTGCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTTGTGCAGTCTAGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAGGGTCTCGTGCAAGGCTTCTGGAGGCACCTTCGGCTGCTATGCTCTCAGCTGGGTGCGACCGGCCCCTGGACAAGGGCTTGACTGGATGGGCAGGATCGTCCCTATACTTGGTATAGCAAACTACGTACAAAAGTTCCAGGGCAGAGTCACAATTACCGCGGACAAATCCACGAACACAGGCTACATGGAACTGAGCAGCCTCGCATCTGAGGACAGCGCCATGTATCACTGTGCGAGAGACATTTCTCCTATGAATTCATCCTTCTTCTCCTGGGGCCAGGGAATCCTGGTCAGCGTCGCCTCAG", "CAGGTCCAGCTTGTGCAGTCTGGGGCCCAGGTGAAGAAGCCTGAGTCCTCGGTGAGGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTGTCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGAGAAGGATCATTCCTATCCTTGGTATAGCAAACTACGTAGAAAAGTTCCAGGGCAGAGTCACGATTACCGCGGACACATCCACGAACACAGCCTACATCGAACTGAACAGCCTCGCATCTGAGGACAGCACCGTGTATCACTGTGCGAGACATATTACTCCTGTTGATTAGTATGTCCGCTGCTGGGGCCAGGGAACCCTGGTCAGTGTCTCCTCAG", "CAGGTCCAGCTGACGCTGTCTGGCGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTTTCCTGCAAGGCGTCCGGAGGCACCTTCCACAGCTATGCTGTCGGCTGGGTGCGACAGGCCCCTGGACAAGGGTTTGAGTGAGTGGGAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACCATTACCGCGGACAAATCCACGAGTAGAGCCTACATGGAGCTGAGCGGCCTAAGATCTGACGACACGGCTGTGTATTACTGTGCGAGAGAGATGACCGTCACAATCTCCTGTTGCCCGTACTGGGGCCAGGGAACCCTGGTCCCCGTCTCCTCAG", "CAGGTCCAGCTGATGTGGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCCCTGTGAAGGTCTCCTGCAAGGCTTCTGGGGGCACCTTCAGCAGCTATACTGTCAGCTGGGTGCGACAGGCCCCTGAACAAGCGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCACATTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTAAGCAGCCTGAGATCTGACGACACGGCTGTGTATTACTGTGCGAGAGAAACTCCGTCGATTGGATACTGTTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTACAGTCTGGGGCTGAGGCGAAGAAGCCTAGGTCCTCGGTGAAGCTCTCCGGCGAGGCTTCTGGAGGTAGCTTCAGCACGTATGCTGTCCGCTGTGTGCGACAGGCCCCTGGACAAGGGCTTGGGAAGGATCGTCCCTGTCCTGGGTATAGTAAACTACGCACAGAAGTTCCGCAGCAGAGTCACGATTACCGCACACAAATCCGCAAGCTCAGCCTACCTGGAGCTGAGCAGCCTCAGATCTGAGGATACGGCCGTGTATTACTGTGCGAATGAGATCTACCCCACTAACTGGTAGTATCCCTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG"], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTATCCGCACTAACTGGAACTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 10, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTATCCGCAC", "dj_insertion": "CC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, false], "stops": [false, true, false, true, true, false, true], "paired-uids": [["de762b8ce4-igh", "de762b8ce4-igl"], ["652adbce26-igl", "d8138c32a6-igl"], ["c074eb0544-igh", "c074eb0544-igk"], ["539dc7162b-igh", "539dc7162b-igk"], ["504e3941e6-igl", "5b83db58bc-igh", "5b83db58bc-igk"], ["19e0f0b170-igl", "d3edbb8447-igh", "d3edbb8447-igk"], ["70cc01a590-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}]}
1
+ {"version-info": {"partis-yaml": 0.1, "partis-git": ""}, "germline-info": {"locus": "igh", "functionalities": {}, "seqs": {"v": {"IGHV1-18*01": "CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTATGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-2*02": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCGGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACCCTAACAGTGGTGGCACAAACTATGCACAGAAGTTTCAGGGCAGGGTCACCATGACCAGGGACACGTCCATCAGCACAGCCTACATGGAGCTGAGCAGGCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-46*03": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTTTCCTGCAAGGCATCTGGATACACCTTCACCAGCTACTATATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAATAATCAACCCTAGTGGTGGTAGCACAAGCTACGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGGACACGTCCACGAGCACAGTCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCTAGAGA", "IGHV1-69*04": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV1-8*01": "CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGATACACCTTCACCAGTTATGATATCAACTGGGTGCGACAGGCCACTGGACAAGGGCTTGAGTGGATGGGATGGATGAACCCTAACAGTGGTAACACAGGCTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGGAACACCTCCATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGG", "IGHV2-5*02": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACAGAC", "IGHV2-70*01": "CAGGTCACCTTGAGGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACACTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAATGTGTGTGAGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTTGCACTCATTGATTGGGATGATGATAAATACTACAGCACATCTCTGAAGACCAGGCTCACCATCTCCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACGTATTACTGTGCACGGATAC", "IGHV3-11*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV3-15*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTAAAGCCTGGGGGGTCCCTTAGACTCTCCTGTGCAGCCTCTGGATTCACTTTCAGTAACGCCTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTGGCCGTATTAAAAGCAAAACTGATGGTGGGACAACAGACTACGCTGCACCCGTGAAAGGCAGATTCACCATCTCAAGAGATGATTCAAAAAACACGCTGTATCTGCAAATGAACAGCCTGAAAACCGAGGACACAGCCGTGTATTACTGTACCACAGA", "IGHV3-20*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGTGTGGTACGGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGGCATGAGCTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGAGTGGGTCTCTGGTATTAATTGGAATGGTGGTAGCACAGGTTATGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCCTTGTATCACTGTGCGAGAGA", "IGHV3-21*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCATCCATTAGTAGTAGTAGTAGTTACATATACTACGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-23*01": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGA", "IGHV3-30*04": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATGCTATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATCATATGATGGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-33*01": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-48*02": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTATAGCATGAACTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTAGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGACGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-66*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCGTCAGTAGCAACTACATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGTTATTTATAGCGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCAGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTTCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-7*01": "GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGCTATTGGATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTGGCCAACATAAAGCAAGATGGAAGTGAGAAATACTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGA", "IGHV3-74*01": "GAGGTGCAGCTGGTGGAGTCCGGGGGAGGCTTAGTTCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACTGGATGCACTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGTGTGGGTCTCACGTATTAATAGTGATGGGAGTAGCACAAGCTACGCGGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACACGCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCAAGAGA", "IGHV3-9*01": "GAAGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGTGCAAAAGATA", "IGHV4-31*03": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCACAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTGGTGGTTACTACTGGAGCTGGATCCGCCAGCACCCAGGGAAGGGCCTGGAGTGGATTGGGTACATCTATTACAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTTACCATATCAGTAGACACGTCTAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACTGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-39*01": "CAGCTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGCAGTAGTAGTTACTACTGGGGCTGGATCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGAGTATCTATTATAGTGGGAGCACCTACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCCGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCAGACACGGCTGTGTATTACTGTGCGAGACA", "IGHV4-4*02": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGGGACCCTGTCCCTCACCTGCGCTGTCTCTGGTGGCTCCATCAGCAGTAGTAACTGGTGGAGTTGGGTCCGCCAGCCCCCAGGGAAGGGGCTGGAGTGGATTGGGGAAATCTATCATAGTGGGAGCACCAACTACAACCCGTCCCTCAAGAGTCGAGTCACCATATCAGTAGACAAGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCCGCGGACACGGCCGTGTATTACTGTGCGAGAGA", "IGHV4-59*11": "CAGGTGCAGCTGCAGGAGTCGGGCCCAGGACTGGTGAAGCCTTCGGAGACCCTGTCCCTCACCTGCACTGTCTCTGGTGGCTCCATCAGTAGTCACTACTGGAGCTGGATCCGGCAGCCCCCAGGGAAGGGACTGGAGTGGATTGGGTATATCTATTACAGTGGGAGCACCAACTACAACCCCTCCCTCAAGAGTCGAGTCACCATATCAGTAGACACGTCCAAGAACCAGTTCTCCCTGAAGCTGAGCTCTGTGACCGCTGCGGACACGGCCGTGTATTACTGTGCGAGAGA"}, "d": {"IGHD1-1*01": "GGTACAACTGGAACGAC", "IGHD1-14*01": "GGTATAACCGGAACCAC", "IGHD1-20*01": "GGTATAACTGGAACGAC", "IGHD1-26*01": "GGTATAGTGGGAGCTACTAC", "IGHD1-7*01": "GGTATAACTGGAACTAC", "IGHD2-15*01": "AGGATATTGTAGTGGTGGTAGCTGCTACTCC", "IGHD2-21*01": "AGCATATTGTGGTGGTGATTGCTATTCC", "IGHD3-10*01": "GTATTACTATGGTTCGGGGAGTTATTATAAC", "IGHD3-16*03": "GTATTATGATTACATTTGGGGGAGTTATCGTTATACC", "IGHD3-22*01": "GTATTACTATGATAGTAGTGGTTATTACTAC", "IGHD3-3*01": "GTATTACGATTTTTGGAGTGGTTATTATACC", "IGHD3-9*01": "GTATTACGATATTTTGACTGGTTATTATAAC", "IGHD4-17*01": "TGACTACGGTGACTAC", "IGHD5-24*01": "GTAGAGATGGCTACAATTAC", "IGHD6-13*01": "GGGTATAGCAGCAGCTGGTAC", "IGHD6-19*01": "GGGTATAGCAGTGGCTGGTAC", "IGHD6-6*01": "GAGTATAGCAGCTCGTCC", "IGHD7-27*01": "CTAACTGGGGA"}, "j": {"IGHJ1*01": "GCTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "IGHJ2*01": "CTACTGGTACTTCGATCTCTGGGGCCGTGGCACCCTGGTCACTGTCTCCTCAG", "IGHJ3*02": "TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAG", "IGHJ4*02": "ACTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ5*02": "ACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "IGHJ6*02": "ATTACTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"}}, "cyst-positions": {"IGHV1-69*04": 285, "IGHV3-74*01": 285, "IGHV2-5*02": 288, "IGHV4-59*11": 282, "IGHV3-9*01": 285, "IGHV1-2*02": 285, "IGHV3-33*01": 285, "IGHV3-21*01": 285, "IGHV2-70*01": 288, "IGHV1-18*01": 285, "IGHV4-31*03": 288, "IGHV3-7*01": 285, "IGHV3-11*01": 285, "IGHV3-30*04": 285, "IGHV3-66*01": 282, "IGHV1-8*01": 285, "IGHV4-39*01": 288, "IGHV1-46*03": 285, "IGHV3-23*01": 285, "IGHV3-15*01": 291, "IGHV3-20*01": 285, "IGHV3-48*02": 285, "IGHV4-4*02": 285}, "tryp-positions": {"IGHJ4*02": 14, "IGHJ2*01": 19, "IGHJ3*02": 16, "IGHJ6*02": 29, "IGHJ5*02": 17, "IGHJ1*01": 18}}, "partitions": [{"logprob": 0.0, "n_clusters": 10, "n_procs": 1, "partition": [["a59a86319d-igh", "63c1e600bb-igh", "96f6ea6b59-igh", "57810cb714-igh", "da88a0f870-igh", "3659f04e0b-igh", "962cf676f9-igh", "8abdecedf6-igh", "f9494fc130-igh"], ["816fc82f73-igh", "810f8f7056-igh", "997456da00-igh", "047be6c743-igh", "7e90b4242e-igh", "14e4ff3a6a-igh"], ["5b83db58bc-igh"], ["dde37df0f3-igh", "ceb855766e-igh", "638b01f2ff-igh", "dc03113497-igh", "42584a044c-igh", "7bfd25e622-igh"], ["a1f869b08f-igh"], ["626eeaeec5-igh"], ["7713c8e94f-igh", "2e42f5c485-igh", "feeff50eb0-igh", "cb9b787bf3-igh", "2f6c99db02-igh", "6a1829447f-igh", "d7b2f887dc-igh", "99ec3a50a4-igh", "9b1977f91e-igh", "475a17c3bd-igh", "bc72018f26-igh", "9cfd60a4c8-igh", "90bc43bbe6-igh"], ["83cd33d783-igh", "24174ebdc9-igh", "da96f2c471-igh", "2d29c65222-igh", "f74e482a75-igh", "c022154f42-igh", "0e191a1e72-igh", "02c4dcf740-igh", "4e6de5d38d-igh"], ["3de3240f4c-igh", "88ea4d6f94-igh"], ["94040b8e55-igh"]]}], "events": [{"has_shm_indels": [false, false, false, false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", ""], "reco_id": "8a9d39afe0", "tree": "[&R] ((((((f9494fc130-igh:0.055287905039308034,3659f04e0b-igh:0.055287905039308034)ltu:0.001907871751482972,96f6ea6b59-igh:0.057195776789943094)lnz:0.04154495365344709,(a59a86319d-igh:0.02395363419572574,(da88a0f870-igh:0.014620720835236483,88969bbdba-igh:0.014620720835236483)abi:0.009332913368968337)qtz:0.07478709624766444)acj:0.0024569791075291893,63c1e600bb-igh:0.10119770956109427)oxy:0.006776771767820858,(962cf676f9-igh:0.09311353123087399,(57810cb714-igh:0.08859795668721575,8abdecedf6-igh:0.08859795668721575)fop:0.004515574511437732)btu:0.014860950100584865)dhn:0.006096904164877114)akt:0.0;", "unique_ids": ["a59a86319d-igh", "63c1e600bb-igh", "96f6ea6b59-igh", "57810cb714-igh", "da88a0f870-igh", "3659f04e0b-igh", "962cf676f9-igh", "8abdecedf6-igh", "f9494fc130-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.1038961038961039, 0.08311688311688312, 0.11428571428571428, 0.08571428571428572, 0.09350649350649351, 0.11948051948051948, 0.09610389610389611, 0.0987012987012987, 0.11428571428571428], "n_mutations": [40, 32, 44, 33, 36, 46, 37, 38, 44], "input_seqs": ["CAGGTGCAGCTGGTGGAGTTTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCTCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTAGGTCCACCAAGCTCCAGGCAAGTGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGGAGACTCAGTGAAACGCCAATTCTCCATCTCCAGAGACAATTCCAAGAACGAGCTGTATCTGCTAATGAACAGCCTCCGAGCCGAGGAAACGGCTGTGTATTGCTGTGCGAGGAAGTTTGTATTTGCAGCAACTGCTGATATAGTTTACTACTCCTACGGTATGGACGTCTGGGACAAAAGGACCACGGTCACCGTCTCCTAAG", "TAGGTGCAGCTGGTGGAGTTTGAGGGAGGCCTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCATTGGGTCCGCCAGGCTCCAGGCAAGTGGCTTGAGTGGGTGGCAGTTATATGGTATGATGGAACTAATAAATACTATGCAGACTCCGTGAAGGGCCGGGTCACCATCTCTAGAGACACTTCCAAGAACACGCTGTATCTTGAAATGAACAGCCTGAGAGCCGAGGACACGGCTTTGTATTACTGTGCGGGAGAACCTTCATTTGCGCGAATTTTCGCTATGCGTTACTATTACTACGGTATGGACGTCTGGGGCCAAAGGATCACGGTCACTGTGTCCTCAG", "CAAGTGCAGCTCGTGGAGTTTCGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGAGTCTTCCGTGCAGCGTCTGGATCCACCTTCAGTTGCTATGGCATGCACTAGGTCCGCCAGGCTCCAGGCAAGTGCCTGGAGTAGGTGCCAGTTATTTGGTATGATGGAAGTAATGAATATTATGCAGACTCCGCGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACACTGTACCTGCATATGAACAGCCTGAGAGCCAGGAACACAGCTGTGTATTGCTGTGCGAGACAGCTTACCTTTAGACGAATGTTCGCTATCTTTTACTAGTACTACGGTATGGACGTCTGGCGCCAAAGAACCACGGTCACCATCTCCTCAG", "CAGGTGCAGCTGGTCGAGTTTGGGGCTGGCGTGGTCCAGCCTGCGAGGTCCCTGAGACTCTCCTGTGCAGTGTCTGGGTTCACCTTCAGTAGCCATGGCACGCACTGGGTCCCCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAATTATATGGTATGATGGAAGTAATAAATACTGCGCAGACTCCGTGAAGGGCCGATTCCCCATCTCCAGAGACAATTCTAACAAAACGCTGTATCTGCAAATGAACAGCCTGAGCGCCGTGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGTCTAATCAGTTTTCTTCCTTACTAATACTACGGTATGGACGTCTGGGGCTAAAGGACCACGCTCACCGTCTCCTCAG", "CAGGTGCAGCTGGTGGAGTTTGGGGGAGGCGTGCTCCAGCCTGGGAGGTCTCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAACTATGGCATGCACTAGGTCCACGAAGCTCCAGGCAAGTGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGGAGACTCCGTGAAACGCCGATTCTCCATCTCCAGAGACAATTCCAAGAACGAGTTGTATCTGCTAATGAACAGCCTGAGAGCCGAGGAAACGGCTGTGTATTGCTGTGCGAGGAAGATTCCATTTGCGGCAACTATTTGTGTACCTTTCTACTCCTACGGTATGGACGTCTGGGACGAAAGGACCACGGTCACCGTCTCCTAAG", "CAGGTGGAGGTCGTGGAGTTTGGGGGAGACGTGGTCCAGCCTGGGAGGTCCCTGAGAGTCTTCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTAGCTCCGCCAGGCTCCAGGGAAGTGCTTGGGGTAGGTGCCAGTTATTTGGTATGATGGAAGTAATAAATATTATGCAGACTTCGCGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACACTGTATCTGCGTGTGCACAGCCTGAAAGGCGAGGACACAGCTGTGTATTACTGTGCGAAACAGATTATAATTAGGCGAATCCTTGCTCTTCTTTACTAGTACTACGGTATGGACGTCTGGCGCCAAAGAACCACGGTCACCGTCTCCTCAG", "CAGGTGCAGGTGGTGGAGTCTCGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGACATTCTTCTGTGCAGCCTCTGGATCCACTTTCAGTAGCCATGACATGCATTGGGTCCGCCAGGCTTCAGGCAAGGGACTGGAGTGGGTGGCAGTTATATGGTATCATGGAAGTAACAAATACTATGTAGACTCCGTGAAGGGCCAATTCACCATCTCCAGAAACAATTCCAAGAACACACTGTATCTGCAAATGAACAGCGTGAGCGGCGAGCACACGGCTGTGTATTACTGTGCGGGAGAAATTACACTTGCGTGGATTATCCTTACAGCTTACTACTACTACGATATGGACGTCTGGGACCAAAGGACCACGGTCACCGTCTTCTCAG", "CAGGCGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGCCCCTGAGCCGCTCCTGTGCAGCGTCTGGATCCACCTTCAGTAGCCATGGCATGCACTGGGTCCGCCAGGCTCGAGGCAAGGGGCTGGAGTGGGTGGCGGTTATATTGTATGATCGAAGTAATAAATACTACGCAGACTCCGTGAAGGGCCGATTTTCCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGACCAGCCCGAGGGCCGAGGATACGGCCGTGTATTACTGTGCGAGAAAGGTTACATTTGGAGCTACATCCCTTCTGTCTTGCTACTACTAGGGTCTGGACGTCTGGGGCCAAAGGACCACGGTCACCGCCTCCTCAC", "CAGGTGCAGCTCGTGGAGTTTGGGGGAGGTGTGATCCAGACTCGGAGGTCCCTGAGAGTCTTCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTAGGTCCGCCAGGCTCCAGGCAAGTGCCTGGAGTGGGTGCCAGTTATTTGGTATGATCGAAATAATAAATATTATGCAGACTCCGCGAAGGCCCGATTTACCATCTCCAGAGACAATTCCAATAACACACTGTATCTGCATATGAACAGCCTGAGAGCCGAGGACACAGCTGTGTATTACTGTGCGAGCCAGGTTATTTTCAGGCGAACCTTCAGCATACTTTACTAGTACTACGGTTTGGACGTCTGGCGCCAAAGAACCACGGTCACCGTCTCCTCAG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCTTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "T", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true], "stops": [true, true, true, true, true, true, false, true, true], "paired-uids": [[], [], ["2d29c65222-igh", "2d29c65222-igl", "96f6ea6b59-igk"], ["57810cb714-igk"], ["da88a0f870-igk"], [], ["962cf676f9-igk"], ["8abdecedf6-igk"], ["f9494fc130-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 351}}, {"has_shm_indels": [false, false, false, false, false, false], "qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "reco_id": "ca482b4daf", "tree": "[&R] ((7e90b4242e-igh:0.051463402886689776,(((14e4ff3a6a-igh:0.03295473809371059,(810f8f7056-igh:0.0030891486978107795,816fc82f73-igh:0.0030891486978107795)dnp:0.029865589396392934)qxy:0.006914997126175454,8a4877bbfc-igh:0.0398697352248173)gjl:0.008515126271973084,(047be6c743-igh:0.03688091087486433,(964f9e33e6-igh:0.0057111060969196594,997456da00-igh:0.0057111060969196594)fuz:0.031169804777944676)afj:0.01150395062192605)cvy:0.0030785413894062613)pvx:0.01487816253686522)bhv:0.0;", "unique_ids": ["816fc82f73-igh", "810f8f7056-igh", "997456da00-igh", "047be6c743-igh", "7e90b4242e-igh", "14e4ff3a6a-igh"], "invalid": false, "v_gene": "IGHV2-5*02", "d_gene": "IGHD1-20*01", "j_gene": "IGHJ1*01", "cdr3_length": 51, "mut_freqs": [0.06756756756756757, 0.06756756756756757, 0.05675675675675676, 0.07837837837837838, 0.05405405405405406, 0.062162162162162166], "n_mutations": [25, 25, 21, 29, 20, 23], "input_seqs": ["TAGATCACCTTGGACGAGTCTGGTCCTACGGTGGTGAAACCCACACACACCCTCACGCTGACCTGCAGCTTCTCTCGGTTCTCACTCAGCATTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACTGTCACCAAGGATACCTCCGAAAACTAGGTGGTCCATGCAATGACCGACATGGACCCTGTGGACTCAGTCACGTATTACTGTCCACACACGGGAAGTATAACTGGAATCCTTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "TAGATCACCTTGGACGAGTCTGGTCCTACGGTGGTGAAACCCACACACACCCTCACGCTGACCTGCAGCTTCTCTCGGTTCTCACTCAGCATTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACTGTCACCAAGGATACCTCCGAAAACTAGGTGGTCCATACAATGACCGACATGGACCCTGTGGACTCAGTCACGTATTACTGTCCACACACGGGAACTATAACTGGAATCCTTGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATGACCTTGAACGAGTCTGGTCCTACGCTGGTGAAACCCACACACACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCACCGGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGGGCAGGCTCACCATCACCAAGGACGCCTCCGAAAACTAGGTGGTCCATACAATGACCGACATGGACCCTGTGGACACAGCCACATATTACTGTCCACACATCGGAGATATAGCTGATACCCTTGAATACTTCCAGCACTGGGACCAGGGGACCCTGGTCACCGTCTCCTCAG", "CAGATCACTTTGAACGAGTCTGGTCCTACGCTGGTGAAACCCACACACACCCTCACGCTGACCTGCGCCTTCTTTCGGTTTTCACTCAGCACTAGTGGAGTGCCTGTGGGCTGGATCCGTCAGCCCCCAGGAAACGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGGGCAGGCTCACCATCACCAAGGACACCTCCGAAAACTAGGTGGTCCATACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTCCACACGTCGGGGGTATAATTGGTTGCCCCGAATTCTTCCACCACTGGGGCCAGGGCACCCTGGTCACCGTCTGCACAG", "CAGATCACCTTGAACGAGTCTGGTCCTACGCTGGTGAAACCCACACACACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATACGTGCTCCAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAAGACTCCTCCGAAAACCAGGTCGTCCATACAATGACCGACATGGACCCTGTGGACACAGCCACATATTACTGTGTACACATCGGATATATGACTGGGCTGGTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "CAGATCACCTTGAACGAGTCTGGTCCTACGCTGGTGAAACCCACACACACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAACCCCCAGGAAAGACCCTGGCGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACTGCCCATTTCTGAAGAGCAGGCTCACCATCACCAAGGATACCTCCGAAAACTAGGTGGTCCATACAATGACCGACATGGACCCTGTGGACTCACTCACATATTACTGTCCACACACTGGAGTTATATCTGGGACCTTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAC"], "naive_seq": "CAGATCACCTTGAAGGAGTCTGGTCCTACGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCAGCACTAGTGGAGTGGGTGTGGGCTGGATCCGTCAGCCCCCAGGAAAGGCCCTGGAGTGGCTTGCACTCATTTATTGGGATGATGATAAGCGCTACAGCCCATCTCTGAAGAGCAGGCTCACCATCACCAAGGACACCTCCAAAAACCAGGTGGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACACACCGGAGGTATAACTGGAACGCTGGAATACTTCCAGCACTGGGGCCAGGGCACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 4, "d_5p_del": 0, "d_3p_del": 2, "j_5p_del": 3, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "ACCGGA", "dj_insertion": "CTG", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [true, true, true, true, false, true], "paired-uids": [["816fc82f73-igk"], ["810f8f7056-igk", "da96f2c471-igh", "da96f2c471-igl"], ["94040b8e55-igh", "94040b8e55-igl", "997456da00-igk"], ["047be6c743-igk"], ["7e90b4242e-igk"], ["14e4ff3a6a-igk"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 288, "j": 336}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "8ff5ec4520", "tree": "[&R] (5b83db58bc-igh:-0.0)ehv:0.0;", "unique_ids": ["5b83db58bc-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.0], "n_mutations": [0], "input_seqs": ["CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG"], "has_shm_indels": [false], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[]], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["0e191a1e72-igh", "5b83db58bc-igk"]], "loci": ["igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": ["", "", "", "", "", ""], "gl_gap_seqs": ["", "", "", "", "", ""], "indel_reversed_seqs": ["", "", "", "", "", ""], "reco_id": "6564755f20", "tree": "[&R] ((7bfd25e622-igh:-0.0,(((dde37df0f3-igh:-0.0,(42584a044c-igh:-0.0,ceb855766e-igh:-0.0)gms:-0.0)abo:-0.0,638b01f2ff-igh:-0.0)fhk:-0.0,dc03113497-igh:-0.0)gho:-0.0)vwy:-0.0)hnz:0.0;", "unique_ids": ["dde37df0f3-igh", "ceb855766e-igh", "638b01f2ff-igh", "dc03113497-igh", "42584a044c-igh", "7bfd25e622-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], "n_mutations": [0, 0, 0, 0, 0, 0], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false, false, false, false, false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGAGCTTCGCAGGCTGGTGCAATACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GCTTCGCA", "dj_insertion": "TGCAA", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true], "stops": [false, false, false, false, false, false], "paired-uids": [["88ea4d6f94-igh", "dde37df0f3-igk"], ["ceb855766e-igk"], ["638b01f2ff-igk"], [], ["42584a044c-igk"], ["7bfd25e622-igk", "f74e482a75-igh", "f74e482a75-igl"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "b2144fab8e", "tree": "[&R] (a1f869b08f-igh:0.052028153902089515)bfo:0.0;", "unique_ids": ["a1f869b08f-igh"], "invalid": false, "v_gene": "IGHV3-33*01", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ6*02", "cdr3_length": 69, "mut_freqs": [0.06493506493506493], "n_mutations": [25], "input_seqs": ["CATGTGCAGCTGGTGGAGTCTGGGGGAGGTGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTACAGCGTCTGGATTCACCTTCAGTAGGTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAAGGGCTGGAGTGCGTGGCGGTTATATGGTATGATGGAAGTGATAAATGCTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTTCCAGAACACGCTGTATCTGCAAATGAACAACCTGAGAGCCGAGGACACCGCTGTGTATTACTGTGCGAGAGACATTACAATTACAGAACTTACCGCCATACGCTACTACTACTACGGTATGGACGTCTGGGGCCGAGGGACCACGGTCACCGTCTCCTCAG"], "has_shm_indels": [false], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCGTGGTCCAGCCTGGGAGGTCCCTGAGACTCTCCTGTGCAGCGTCTGGATTCACCTTCAGTAGCTATGGCATGCACTGGGTCCGCCAGGCTCCAGGCAAGGGGCTGGAGTGGGTGGCAGTTATATGGTATGATGGAAGTAATAAATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCTGTGTATTACTGTGCGAGAGAGATTACATTTGGGGGAGTTATCGTTATACCCTACTACTACTACGGTATGGACGTCTGGGGCCAAGGGACCACGGTCACCGTCTCCTCAG", "duplicates": [[]], "v_3p_del": 0, "d_5p_del": 7, "d_3p_del": 0, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "", "dj_insertion": "C", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["02c4dcf740-igh", "02c4dcf740-igl", "a1f869b08f-igk"]], "loci": ["igh"], "codon_positions": {"v": 285, "j": 351}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "182e588062", "tree": "[&R] (626eeaeec5-igh:0.05486906638979231)emy:0.0;", "unique_ids": ["626eeaeec5-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD5-24*01", "j_gene": "IGHJ4*02", "cdr3_length": 51, "mut_freqs": [0.05722070844686648], "n_mutations": [21], "input_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGCCTTGGTACAGCCTGGGGGCTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCGGCTATTTGTGGTAGTGGTGGTAGTACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCAACTCCAGAGACAATTCCAAGAACACGCTGTGTCTGCAAATGAACAGCCTGAGAGCCGGGGACAGGGCCGTATATTACTGTGCTTGGGGTTGAGGATCGCGTAGAAATAGCTATAATTTTGACTACTGGGACCAGTGAACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGGCTGGATGGGGAGCGCGTAGAGATGGCTACAATTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "v_3p_del": 6, "d_5p_del": 0, "d_3p_del": 3, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTGGATGGGGAGCGC", "dj_insertion": "", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [true], "paired-uids": [["626eeaeec5-igk", "c022154f42-igh"]], "loci": ["igh"], "codon_positions": {"v": 285, "j": 333}}, {"qr_gap_seqs": ["", "", "", "", "", "", "", "", "", "", "", "CAGGTCCAGCTGTAGCCTGTGCAGTCTGGCGCTGAGGTGAAGAAGCCTAGGTCCTCGCTGAACGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCGATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGTGTGGATGGGGAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATTGTAAGCACATAGTTTCTTTGACTACTGGGGCCAGGGAACTCTGGTCACCGTCTCCTCAG", ""], "gl_gap_seqs": ["", "", "", "", "", "", "", "", "", "", "", "CAGGTCCAGCTG......GTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", ""], "indel_reversed_seqs": ["", "", "", "", "", "", "", "", "", "", "", "CAGGTCCAGCTGGTGCAGTCTGGCGCTGAGGTGAAGAAGCCTAGGTCCTCGCTGAACGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCGATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGTGTGGATGGGGAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATTGTAAGCACATAGTTTCTTTGACTACTGGGGCCAGGGAACTCTGGTCACCGTCTCCTCAG", ""], "reco_id": "d217d13f25", "tree": "[&R] (((475a17c3bd-igh:0.024434724505878126,((9cfd60a4c8-igh:0.0005385395631263077,bc72018f26-igh:0.0005385395631263077)aik:0.0120395529242032,((7713c8e94f-igh:0.007203530106460863,feeff50eb0-igh:0.007203530106460863)mqw:0.00395603746532079,(cb9b787bf3-igh:0.009662112432925023,((90bc43bbe6-igh:0.0005324356364431531,9b1977f91e-igh:0.0005324356364431531)opz:0.00020492835351040137,99ec3a50a4-igh:0.000737363989865308)acv:0.00892474844460403)bfo:0.001497455137753548)der:0.0014185249159890893)aem:0.011856632019431084)mtv:0.003920582495277975,((6a1829447f-igh:0.01855194606246793,2f6c99db02-igh:0.01855194606246793)aly:0.007805482419400395,(2e42f5c485-igh:0.00028151529083928547,d7b2f887dc-igh:0.00028151529083928547)dfj:0.02607591318463116)isu:0.001997878521273324)vwz:0.0013248247968210064)hkw:0.0;", "unique_ids": ["7713c8e94f-igh", "2e42f5c485-igh", "feeff50eb0-igh", "cb9b787bf3-igh", "2f6c99db02-igh", "6a1829447f-igh", "d7b2f887dc-igh", "99ec3a50a4-igh", "9b1977f91e-igh", "475a17c3bd-igh", "bc72018f26-igh", "9cfd60a4c8-igh", "90bc43bbe6-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD3-16*03", "j_gene": "IGHJ4*02", "cdr3_length": 42, "mut_freqs": [0.0223463687150838, 0.036312849162011177, 0.025139664804469275, 0.0335195530726257, 0.04189944134078212, 0.0335195530726257, 0.036312849162011177, 0.036312849162011177, 0.0335195530726257, 0.0223463687150838, 0.027932960893854747, 0.0335195530726257, 0.0335195530726257], "n_mutations": [8, 13, 9, 12, 15, 12, 13, 13, 12, 8, 10, 12, 12], "input_seqs": ["CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCCATGCTATCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGTAGACACAAAGTTTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTCGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCACCTTGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACGGGGGACAAATCCACGAGCACACCCTACATGGAGCTGAGCAGCCTGAGATCTAAGGACATGGCCGTGTATTACTGTGCGAGCTTTTGGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG", "CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAAGCTTCTGGAGGCACCTTCAGCAGCCATGCTATCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATTGTCGTAGGCACATAGTTTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCACCCATGCTATCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAACCTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACATGGCCGTGTATTACTGTGCGAGGTTGTGGTAGGCGCATAGTTTCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAACGCTTCTGGAGGCGCCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCTAGGGCAGAGTCACGATTACCACGGACAAATCCGCGAGCCCAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATGACTGTGCGAGGTTATCCCAAGCGCATGCTTTTTTTGAATACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTAGTGCAGTCTGCGGCTGAGCTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAACGCTTCTGGAGGCACCTTCAGCAGCTTTGCTATCAGCTGGGTGCGACAGGCGCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATTCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCACGGACAAATCCACGAGCACAGCCTAGATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGCTATCGCATGCCCATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTCGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCACCTTGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACGGGGGACAAATCCACGAGCACACCCTACATGGAGCTGAGCAGCCTGAGATCTAAGGACATGGCCGTGTATTACTGTGCGAGCTTTTGGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTTTCCTCAG", "CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCACCCATGCTGTCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATCGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGTAGCCACGTAGCTTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCACCCATGCTGTCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATCGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGTAGCCACGTAGTTTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCCCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGCTTACCGCGGACAAATCCACGACCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGTCAGGTTATTACAGGCACATAGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGCAGTCTGGCGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAACGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCGATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGGAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATTGTAAGCACATAGTTTCTTTGACTACTGGGGCCAGGGAACTCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGTAGCCTGTGCAGTCTGGCGCTGAGGTGAAGAAGCCTAGGTCCTCGCTGAACGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCGATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGTGTGGATGGGGAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATTGTAAGCACATAGTTTCTTTGACTACTGGGGCCAGGGAACTCTGGTCACCGTCTCCTCAG", "CAGGTCCAGCTGGTGAAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGCTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCACCCATGCTGTCAGCTCGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATCGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGTAGCCACGTAGTTTTTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "has_shm_indels": [false, false, false, false, false, false, false, false, false, false, false, true, false], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGGTTATCGCAGGCACATAGTTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], [], [], [], [], []], "v_3p_del": 3, "d_5p_del": 24, "d_3p_del": 7, "j_5p_del": 5, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "G", "dj_insertion": "CAGGCACATAGTTCC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false, false, false, false, false], "in_frames": [true, true, true, true, true, true, true, true, true, true, true, true, true], "stops": [true, false, true, true, true, true, false, true, true, false, true, true, true], "paired-uids": [["7713c8e94f-igk"], ["2e42f5c485-igk"], ["feeff50eb0-igk"], ["cb9b787bf3-igk"], ["2f6c99db02-igk"], ["6a1829447f-igk"], ["d7b2f887dc-igk"], ["3de3240f4c-igh", "3de3240f4c-igl", "99ec3a50a4-igk"], [], ["475a17c3bd-igk", "4e6de5d38d-igh", "4e6de5d38d-igl"], [], ["9cfd60a4c8-igk"], []], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 324}}, {"has_shm_indels": [false, true, false, false, true, false, false, false, false], "qr_gap_seqs": ["", "CAAGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGATCAAGCCTCAAAGCCCCCTGAAACTCTTCTGCGCAGTCTCTGGATTCACCTTCGGTGACTAGTGCATTAGCTGGATCCCCCCGACTCCAGGAATAGGGCTGGAGTCGGTTTCATACATTATTAGTAGTGGTGGTTCCATGTAC....CAGATTCTGTGAAGGGCCGATTCACCATCTCTAGGGACAATGGCAAGAACTCACTATATCTGTAAATGAACAGCCCGAGAGCCGAGAACACGGCCATGTGTTACTGTGCGAGAGACTTAGATGTATTGTACTAGCTCTTTGATTACTGGGGCTAGGGAACCCTGGTGACCGTCTCCTCGG", "", "", "CAGGTGCAGCCGGTGGAGTCTGGGGGAGGCTTGATCAAACCTGGAGGGCGCCTGAAACTCTCCTCTGCAGCTTCTGGATTCACCTTCAGTCACTAGTACATGAGCTGCATCCGCCAGGCTCCAGGGATGGGGCTGAAGTGGATTTCATACATTATTAGTAGTAG.AGTTCCATAGGCATCGCACACTCTGTGAAAGGCCGATTTATCATCTCCAGGGAGAACGCCGAGAACTCACTGTCTTTGCAAATGAACAACCCGAGAGTCGAGGACACGGCCTTGTATTACTGTGCGGGAGATCTTCTTGTCTGCTGGCGTCTCTTTGATTACTGGCGCCAGGGAACCCTGGTTACCGTCTCCTCGG", "", "", "", ""], "gl_gap_seqs": ["", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "", "", "", ""], "indel_reversed_seqs": ["", "CAAGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGATCAAGCCTCAAAGCCCCCTGAAACTCTTCTGCGCAGTCTCTGGATTCACCTTCGGTGACTAGTGCATTAGCTGGATCCCCCCGACTCCAGGAATAGGGCTGGAGTCGGTTTCATACATTATTAGTAGTGGTGGTTCCATGTACTTCGCAGATTCTGTGAAGGGCCGATTCACCATCTCTAGGGACAATGGCAAGAACTCACTATATCTGTAAATGAACAGCCCGAGAGCCGAGAACACGGCCATGTGTTACTGTGCGAGAGACTTAGATGTATTGTACTAGCTCTTTGATTACTGGGGCTAGGGAACCCTGGTGACCGTCTCCTCGG", "", "", "CAGGTGCAGCCGGTGGAGTCTGGGGGAGGCTTGATCAAACCTGGAGGGCGCCTGAAACTCTCCTCTGCAGCTTCTGGATTCACCTTCAGTCACTAGTACATGAGCTGCATCCGCCAGGCTCCAGGGATGGGGCTGAAGTGGATTTCATACATTATTAGTAGTAGTAGTTCCATAGGCATCGCACACTCTGTGAAAGGCCGATTTATCATCTCCAGGGAGAACGCCGAGAACTCACTGTCTTTGCAAATGAACAACCCGAGAGTCGAGGACACGGCCTTGTATTACTGTGCGGGAGATCTTCTTGTCTGCTGGCGTCTCTTTGATTACTGGCGCCAGGGAACCCTGGTTACCGTCTCCTCGG", "", "", "", ""], "reco_id": "e707c96016", "tree": "[&R] ((((((4e6de5d38d-igh:0.07209171405096904,c022154f42-igh:0.07209171405096904)bej:0.0024877365972909237,da96f2c471-igh:0.07457945064715434)gju:0.05417182866516069,(83cd33d783-igh:0.031233929838579148,(8828e95dd5-igh:0.019064437781166208,f74e482a75-igh:0.019064437781166208)gqw:0.01216949206846909)dlt:0.09751734947373586)gko:0.003203735701746465,24174ebdc9-igh:0.13195501502732887)uwz:0.008836455136563368,(0e191a1e72-igh:0.12141378956210414,(2d29c65222-igh:0.11552578370357505,02c4dcf740-igh:0.11552578370357505)ovz:0.005888005816515696)hko:0.01937768060510495)htz:0.007949953454340257)emp:0.0;", "unique_ids": ["83cd33d783-igh", "24174ebdc9-igh", "da96f2c471-igh", "2d29c65222-igh", "f74e482a75-igh", "c022154f42-igh", "0e191a1e72-igh", "02c4dcf740-igh", "4e6de5d38d-igh"], "invalid": false, "v_gene": "IGHV3-11*01", "d_gene": "IGHD7-27*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.1523545706371191, 0.15789473684210525, 0.13850415512465375, 0.13850415512465375, 0.14127423822714683, 0.1883656509695291, 0.10526315789473684, 0.12465373961218837, 0.16066481994459833], "n_mutations": [55, 57, 50, 50, 51, 68, 38, 45, 58], "input_seqs": ["CAGCTGCAGCCGGTGGAGTCTGGGGGAGGCTTGATCAAACCTGGAGGGCGCCTGAAACTCTCCTGTGCGGCCTCTGGATTCACCTTCAGTCACTAGTACATGAGCTGCATCCGCCAGGCTCCGGGGATAGGGCTGAAGTGGATTTCATACATTATTAGTAGTAGTATTTCCATAGGCATCGCAGAATGTGTGAAGGGCCGATTTATCATCTCCAGGGAGAACGCCGAGAACTCACTGTCTTTGCAAATGAACAACCCGAGAGTCGAGGACACGGCCTTGTATTACTGTGCGAGAGATCTTCTTCTCTGCACGCCTCTCTTTGATTACTGGCGCCAGGGAACCCTGGTTACCGTCTCCTCCG", "CAAGTGCAGCTGGTGCAGTCTGGGGGAGGCTTGATCAAGCCTCAAAGCCCCCTGAAACTCTTCTGCGCAGTCTCTGGATTCACCTTCGGTGACTAGTGCATTAGCTGGATCCCCCCGACTCCAGGAATAGGGCTGGAGTCGGTTTCATACATTATTAGTAGTGGTGGTTCCATGTACCAGATTCTGTGAAGGGCCGATTCACCATCTCTAGGGACAATGGCAAGAACTCACTATATCTGTAAATGAACAGCCCGAGAGCCGAGAACACGGCCATGTGTTACTGTGCGAGAGACTTAGATGTATTGTACTAGCTCTTTGATTACTGGGGCTAGGGAACCCTGGTGACCGTCTCCTCGG", "CAGGTGCAGCTGGTGGTGTCTGGGGGAACCTTGATCAAGCCTGAAGGGCGCCTGAAATTCTCCTGCGCAGCCTCTGGATTCACCTTCAGTGATTAGTACATGAACTGGATCCGCCAGGCTGCACAGATGTGGCTGGACTGGGTTTCATACATTATTAGTAGTGGTAGTACCATATACTTCCCACACTCTGTGAAGGGCCGAATCATCATCTCCAGGGACAACAGCAAGAACTCACTCTATCTGCAAATGAACAGCCCGAGTGTCGAGGACACGGCCGTGTATTACTGTGAGAGGGATAATTTTCATTGCCGATACTGCTCTGACTATTGGGGCCAGGGAACGCTGGTCACCGTCACCTCGG", "CAGGTGCAGCTGGTGGAATCTGGGGAAGGCTTGGTTAAGCCTGGAGGGCCCCTGGGACTCTCCTCTACAATCTGTGGATTTACCTTCAGTTACTACTACATGAGCTGGATCGGCCAGGCTTCAGGGAAGGGGCTCGAGTGAGTTTCATACATTATTAGTTCTGATAGTCCCCTCTACTTCGCACACTCCGTGAAGAGCCGATTCACCGTCTCCAGGGACAATGCCAAGAACTCACTGTATGTCCAAATGAACAGATGGAGTGCCGAGGACACGGCCGTGTATTACTGTGCGGCGGACCACCGTCAACAGAGTAACTCCTTTGACTACTGGGGCCAGGGAACACTGGTCACCGTCTCCTCGG", "CAGGTGCAGCCGGTGGAGTCTGGGGGAGGCTTGATCAAACCTGGAGGGCGCCTGAAACTCTCCTCTGCAGCTTCTGGATTCACCTTCAGTCACTAGTACATGAGCTGCATCCGCCAGGCTCCAGGGATGGGGCTGAAGTGGATTTCATACATTATTAGTAGTAGAGTTCCATAGGCATCGCACACTCTGTGAAAGGCCGATTTATCATCTCCAGGGAGAACGCCGAGAACTCACTGTCTTTGCAAATGAACAACCCGAGAGTCGAGGACACGGCCTTGTATTACTGTGCGGGAGATCTTCTTGTCTGCTGGCGTCTCTTTGATTACTGGCGCCAGGGAACCCTGGTTACCGTCTCCTCGG", "CAGGTGCACCTGGTGATGTTTGGCGCAGGCTTGATCAAGCCTGAAGGGCGCCTGAAACTCTCCCGCGCAGCCTCTGGACTCACCTTCATTGATTAGTTCGTGAGCTGGATCCGCCAGGCTGCAGAGGTCTGGCTGGACTGGGTTTCATACATTATTAGTAGTGGTACTACCATATACTTCGCACACTCTGTGAAGGGCCGATCCATCATCTCCAAGGACAACGCCAACAAGTCAGTCTATCTGCAAGTGAACAGCCCGAGTGTCGAGGACACGGCCGTGTTTGACTGTGCGGGAGGTAGTCATCTCGTGACTTCGGGCTCTGACTTCTGGGGCCAGGGAACGCTGGTCAGCGTCACTTCGG", "CAGGTGCAGCTGGTCTAGTCTGAGGGAGGGTTGGTCAAGCCTGGAGGGCCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCGCCTTCAGTGACTGCCACATGAGCTGGATCCGCCAGACTCCAGGGAAGAGGCTAGAGTGGGTTTCATACATTATTAGTAGTGGTAGTACCCTATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAAGGCCAAGAACTCACTGTATCTGTAAATGAACGGGCCGAGTGCCGAGGACATGTCCGTGTATTACTGTGCGAAAGACTTCCCCGGGTCCCGCTCGTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCGCCGTTTCCTTTG", "CAGGTGTGACTGGTAGAGTCTCGGGGAGGCTTGGTCAAGCCTAAAGGGCCCCTGAGACTCTCCTGTGTAGCCTCTGGATTCACCTTCAATGACTACTACGTGAGCTGGATCCCCCAGGCTCCAGGGAAAGGGTTGGAGTGGGTTTCATACGTTACTAGATCTGGTAGTACCCTATACTACGCTGACTCTGTGATGGGCGGATTCGCCATCTCCAGGAACAACGCTAAGAACTCACTGTATCTGCAAATGAACAGCCCGAGAGCCGAGGACACGGCCGTATATTAATGTGCGCGAAATCTTCCTTACTGAATTTCCTTCTTTGACTACTGGGGCTAGGGAACCCTGGTCACCGTCCCTTCGG", "CGGATGCAGCTGGTGGTGCCTCGGGGAAGCTTGATCAAGCCTGAAGGGCGCCTGAAACTCTCCTGCGCAGCCTCTGGATTCACCTTCAGTGATTAGTACATGAGCTGGATCTGCCTGGCTGCAGAGATGTGGCTGGACTGGGTTTCATACATTATTGGTAGTGGTAGTAGCATATACTTCGCACACTCTGTGAGTGGCCTATCCATCATCTCCAGGGACAACGCCAAGAGCTCAGTGTATCTGCAAATGAACAGCCCGAGTGTCGAGGACACGGGCGTGTATTACTGTGCGAGAGAAACTCTTCTCCTATTTTCCTCCTCTAACTACTGGGGCTAGGGAACGCCGGTCACCGTCGCCTCGG"], "naive_seq": "CAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCAAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACTACTACATGAGCTGGATCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGACCAGCCTAACTGGGGCTGCTCCTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], [], [], [], [], [], [], [], []], "v_3p_del": 0, "d_5p_del": 0, "d_3p_del": 1, "j_5p_del": 4, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CCAGC", "dj_insertion": "CTGCTC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false, false, false, false, false, false, false, false], "in_frames": [true, false, true, true, false, true, true, true, true], "stops": [true, true, true, true, true, true, true, true, true], "paired-uids": [["83cd33d783-igl"], ["24174ebdc9-igl", "8828e95dd5-igl"], ["810f8f7056-igh", "810f8f7056-igk", "da96f2c471-igl"], ["2d29c65222-igl", "96f6ea6b59-igh", "96f6ea6b59-igk"], ["7bfd25e622-igh", "7bfd25e622-igk", "f74e482a75-igl"], ["626eeaeec5-igh", "626eeaeec5-igk"], ["5b83db58bc-igh", "5b83db58bc-igk"], ["02c4dcf740-igl", "a1f869b08f-igh", "a1f869b08f-igk"], ["475a17c3bd-igh", "475a17c3bd-igk", "4e6de5d38d-igl"]], "loci": ["igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": ["GAGGTGCAGCTGTTGGGGTCTGGCGGAAGCTTGGTACAG.....GGGCCTCCTGAGACTCTCCTGCTCAGCCTCTGGACTCAACTTTAGTAGCCATACCATGAGCTGGGTCCGCCAGGGTCCAGGAAAGGGACTGGAGTGGGTCTCGGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAAACTCTGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAAGAACACGCCATATCTGCAGATGAACAGCCTCGGAGCCGAGGACACGGACCTATATTACTGTGGGAAAGATCTGAGGGAGGCGTTCCGTTACTTTGGCTATTGGGCCCAGGGAACCCTGGTCACCGTCTCCCCAG", "GGGCTGCAGCTGTTGGAGTCTGGCGGAAGCTTGGTACAGCCTGGGGGCTCCCTGAAACTCTCCTCTTCAGCCTCTGGATTCAGTTTTAGCAGCCATGCCACGAGCTGGGTCCGCCAGCGTCCAGGGAAGGGACTG..................AGTGGCAGTGGTGGTAGCACATACTACGTACACTCCGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAGGAACACGCCGTATCTGCAGATGAACAGCTTGCGAGCCAAGGACACGGACCTATATTACTGTGGGAAAGATTCGCCATCGCTCTTCAGTTGCTTTGGCTATTGGGGCCAGGGAACCCTGGTCACCGTCTCCCCAG"], "gl_gap_seqs": ["GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG"], "indel_reversed_seqs": ["GAGGTGCAGCTGTTGGGGTCTGGCGGAAGCTTGGTACAGCCTGGGGGCCTCCTGAGACTCTCCTGCTCAGCCTCTGGACTCAACTTTAGTAGCCATACCATGAGCTGGGTCCGCCAGGGTCCAGGAAAGGGACTGGAGTGGGTCTCGGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAAACTCTGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAAGAACACGCCATATCTGCAGATGAACAGCCTCGGAGCCGAGGACACGGACCTATATTACTGTGGGAAAGATCTGAGGGAGGCGTTCCGTTACTTTGGCTATTGGGCCCAGGGAACCCTGGTCACCGTCTCCCCAG", "GGGCTGCAGCTGTTGGAGTCTGGCGGAAGCTTGGTACAGCCTGGGGGCTCCCTGAAACTCTCCTCTTCAGCCTCTGGATTCAGTTTTAGCAGCCATGCCACGAGCTGGGTCCGCCAGCGTCCAGGGAAGGGACTGGAGTGGGTCTCGGCTATTAGTGGCAGTGGTGGTAGCACATACTACGTACACTCCGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAGGAACACGCCGTATCTGCAGATGAACAGCTTGCGAGCCAAGGACACGGACCTATATTACTGTGGGAAAGATTCGCCATCGCTCTTCAGTTGCTTTGGCTATTGGGGCCAGGGAACCCTGGTCACCGTCTCCCCAG"], "reco_id": "dd76478982", "tree": "[&R] ((88ea4d6f94-igh:0.07199919300546116,3de3240f4c-igh:0.07199919300546116)qtx:0.08648262724494404)ivw:0.0;", "unique_ids": ["3de3240f4c-igh", "88ea4d6f94-igh"], "invalid": false, "v_gene": "IGHV3-23*01", "d_gene": "IGHD6-19*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.13573407202216067, 0.12188365650969529], "n_mutations": [49, 44], "input_seqs": ["GAGGTGCAGCTGTTGGGGTCTGGCGGAAGCTTGGTACAGGGGCCTCCTGAGACTCTCCTGCTCAGCCTCTGGACTCAACTTTAGTAGCCATACCATGAGCTGGGTCCGCCAGGGTCCAGGAAAGGGACTGGAGTGGGTCTCGGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAAACTCTGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAAGAACACGCCATATCTGCAGATGAACAGCCTCGGAGCCGAGGACACGGACCTATATTACTGTGGGAAAGATCTGAGGGAGGCGTTCCGTTACTTTGGCTATTGGGCCCAGGGAACCCTGGTCACCGTCTCCCCAG", "GGGCTGCAGCTGTTGGAGTCTGGCGGAAGCTTGGTACAGCCTGGGGGCTCCCTGAAACTCTCCTCTTCAGCCTCTGGATTCAGTTTTAGCAGCCATGCCACGAGCTGGGTCCGCCAGCGTCCAGGGAAGGGACTGAGTGGCAGTGGTGGTAGCACATACTACGTACACTCCGTGAAGGGCCGATTCATTATCTCCAGAGACAATTCCAGGAACACGCCGTATCTGCAGATGAACAGCTTGCGAGCCAAGGACACGGACCTATATTACTGTGGGAAAGATTCGCCATCGCTCTTCAGTTGCTTTGGCTATTGGGGCCAGGGAACCCTGGTCACCGTCTCCCCAG"], "has_shm_indels": [true, true], "naive_seq": "GAGGTGCAGCTGTTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGCAGCTATGCCATGAGCTGGGTCCGCCAGGCTCCAGGGAAGGGGCTGGAGTGGGTCTCAGCTATTAGTGGTAGTGGTGGTAGCACATACTACGCAGACTCCGTGAAGGGCCGGTTCACCATCTCCAGAGACAATTCCAAGAACACGCTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTATATTACTGTGCGAAAGACTCAGCACGGCTGGTGAATTACTTTGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[], []], "v_3p_del": 0, "d_5p_del": 12, "d_3p_del": 3, "j_5p_del": 2, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "CTCAGCAC", "dj_insertion": "TGAAT", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false, false], "in_frames": [false, true], "stops": [true, false], "paired-uids": [["3de3240f4c-igl", "99ec3a50a4-igh", "99ec3a50a4-igk"], ["dde37df0f3-igh", "dde37df0f3-igk"]], "loci": ["igh", "igh"], "codon_positions": {"v": 285, "j": 327}}, {"qr_gap_seqs": [""], "gl_gap_seqs": [""], "indel_reversed_seqs": [""], "reco_id": "da8c9d16ae", "tree": "[&R] (94040b8e55-igh:0.11407138548387172)gko:0.0;", "unique_ids": ["94040b8e55-igh"], "invalid": false, "v_gene": "IGHV1-69*04", "d_gene": "IGHD1-7*01", "j_gene": "IGHJ4*02", "cdr3_length": 45, "mut_freqs": [0.08587257617728532], "n_mutations": [31], "input_seqs": ["CAGGTCCAGCCGGTGCAGTCTCGGGCTGACGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCTCCTTCAGAAGCTATGCTATCAGCTGGGTACGACAGACCCCTGGACAAGGCTTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACACACAGCAGTTCCAGGGCAAAGTCACGGTTACCGCGGACAGATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGGTCTGAGGACACCGCCGTGTATTACTGTGCGAGAGAGACTATCCCCGGTAACTCATTGCAATTCTACTGGGGCCAGAGAACCCTGGTCACCGCCTCCTCAG"], "has_shm_indels": [false], "naive_seq": "CAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAAGGATCATCCCTATCCTTGGTATAGCAAACTACGCACAGAAGTTCCAGGGCAGAGTCACGATTACCGCGGACAAATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGAGAGGCTATCCGCACTAACTGGAACTACCCCTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAG", "duplicates": [[]], "v_3p_del": 0, "d_5p_del": 4, "d_3p_del": 0, "j_5p_del": 10, "v_5p_del": 0, "j_3p_del": 0, "vd_insertion": "GGCTATCCGCAC", "dj_insertion": "CC", "fv_insertion": "", "jf_insertion": "", "mutated_invariants": [false], "in_frames": [true], "stops": [false], "paired-uids": [["94040b8e55-igl", "997456da00-igh", "997456da00-igk"]], "loci": ["igh"], "codon_positions": {"v": 285, "j": 327}}]}