parsl 2024.6.24__py3-none-any.whl → 2024.7.1__py3-none-any.whl

parsl/executors/high_throughput/errors.py

@@ -1,3 +1,36 @@
+import time
+
+
+class ManagerLost(Exception):
+    """
+    Task lost due to manager loss.  Manager is considered lost when multiple heartbeats
+    have been missed.
+    """
+    def __init__(self, manager_id: bytes, hostname: str) -> None:
+        self.manager_id = manager_id
+        self.tstamp = time.time()
+        self.hostname = hostname
+
+    def __str__(self) -> str:
+        return (
+            f"Task failure due to loss of manager {self.manager_id.decode()} on"
+            f" host {self.hostname}"
+        )
+
+
+class VersionMismatch(Exception):
+    """Manager and Interchange versions do not match"""
+    def __init__(self, interchange_version: str, manager_version: str):
+        self.interchange_version = interchange_version
+        self.manager_version = manager_version
+
+    def __str__(self) -> str:
+        return (
+            f"Manager version info {self.manager_version} does not match interchange"
+            f" version info {self.interchange_version}, causing a critical failure"
+        )
+
+
 class WorkerLost(Exception):
     """Exception raised when a worker is lost
     """

parsl/executors/high_throughput/executor.py

@@ -551,6 +551,7 @@ class HighThroughputExecutor(BlockProviderExecutor, RepresentationMixin, UsageIn
         logger.debug("Popened interchange process. Writing config object")
         stdin.write(config_pickle)
         stdin.flush()
+        stdin.close()
         logger.debug("Sent config object. Requesting worker ports")
         try:
             (self.worker_task_port, self.worker_result_port) = self.command_client.run("WORKER_PORTS", timeout_s=120)

parsl/executors/high_throughput/interchange.py

@@ -17,6 +17,7 @@ import zmq
 
 from parsl import curvezmq
 from parsl.app.errors import RemoteExceptionWrapper
+from parsl.executors.high_throughput.errors import ManagerLost, VersionMismatch
 from parsl.executors.high_throughput.manager_record import ManagerRecord
 from parsl.monitoring.message_type import MessageType
 from parsl.process_loggers import wrap_with_logs
@@ -31,32 +32,6 @@ LOGGER_NAME = "interchange"
 logger = logging.getLogger(LOGGER_NAME)
 
 
-class ManagerLost(Exception):
-    ''' Task lost due to manager loss. Manager is considered lost when multiple heartbeats
-    have been missed.
-    '''
-    def __init__(self, manager_id: bytes, hostname: str) -> None:
-        self.manager_id = manager_id
-        self.tstamp = time.time()
-        self.hostname = hostname
-
-    def __str__(self) -> str:
-        return "Task failure due to loss of manager {} on host {}".format(self.manager_id.decode(), self.hostname)
-
-
-class VersionMismatch(Exception):
-    ''' Manager and Interchange versions do not match
-    '''
-    def __init__(self, interchange_version: str, manager_version: str):
-        self.interchange_version = interchange_version
-        self.manager_version = manager_version
-
-    def __str__(self) -> str:
-        return "Manager version info {} does not match interchange version info {}, causing a critical failure".format(
-            self.manager_version,
-            self.interchange_version)
-
-
 class Interchange:
     """ Interchange is a task orchestrator for distributed systems.
 

parsl/tests/test_bash_apps/test_memoize_ignore_args.py

@@ -1,7 +1,5 @@
 import os
 
-import pytest
-
 import parsl
 from parsl.app.app import bash_app
 
@@ -23,24 +21,18 @@ def no_checkpoint_stdout_app_ignore_args(stdout=None):
     return "echo X"
 
 
-def test_memo_stdout():
+def test_memo_stdout(tmpd_cwd):
+    path_x = tmpd_cwd / "test.memo.stdout.x"
 
     # this should run and create a file named after path_x
-    path_x = "test.memo.stdout.x"
-    if os.path.exists(path_x):
-        os.remove(path_x)
-
-    no_checkpoint_stdout_app_ignore_args(stdout=path_x).result()
-    assert os.path.exists(path_x)
-
-    # this should be memoized, so not create benc.test.y
-    path_y = "test.memo.stdout.y"
+    no_checkpoint_stdout_app_ignore_args(stdout=str(path_x)).result()
+    assert path_x.exists()
 
-    if os.path.exists(path_y):
-        os.remove(path_y)
+    # this should be memoized, so should not get created
+    path_y = tmpd_cwd / "test.memo.stdout.y"
 
     no_checkpoint_stdout_app_ignore_args(stdout=path_y).result()
-    assert not os.path.exists(path_y)
+    assert not path_y.exists(), "For memoization, expected NO file written"
 
     # this should also be memoized, so not create an arbitrary name
     z_fut = no_checkpoint_stdout_app_ignore_args(stdout=parsl.AUTO_LOGNAME)

parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py

@@ -1,5 +1,4 @@
 import copy
-import os
 from typing import List
 
 import pytest
@@ -30,21 +29,17 @@ def no_checkpoint_stdout_app(stdout=None):
     return "echo X"
 
 
-def test_memo_stdout():
-
+def test_memo_stdout(tmpd_cwd):
     assert const_list_x == const_list_x_arg
 
-    path_x = "test.memo.stdout.x"
-    if os.path.exists(path_x):
-        os.remove(path_x)
+    path_x = tmpd_cwd / "test.memo.stdout.x"
 
     # this should run and create a file named after path_x
-    no_checkpoint_stdout_app(stdout=path_x).result()
-    assert os.path.exists(path_x)
+    no_checkpoint_stdout_app(stdout=str(path_x)).result()
+    path_x.unlink(missing_ok=False)
 
-    os.remove(path_x)
-    no_checkpoint_stdout_app(stdout=path_x).result()
-    assert not os.path.exists(path_x)
+    no_checkpoint_stdout_app(stdout=str(path_x)).result()
+    assert not path_x.exists(), "For memoization, expected NO file written"
 
     # this should also be memoized, so not create an arbitrary name
     z_fut = no_checkpoint_stdout_app(stdout=parsl.AUTO_LOGNAME)

parsl/tests/test_error_handling/test_retries.py

@@ -1,9 +1,7 @@
-import argparse
 import os
 
 import pytest
 
-import parsl
 from parsl import bash_app, python_app
 from parsl.tests.configs.local_threads import fresh_config
 
@@ -68,8 +66,6 @@ def test_fail_nowait(numtasks=10):
         assert isinstance(
             e, TypeError), "Expected a TypeError, got {}".format(e)
 
-    print("Done")
-
 
 @pytest.mark.local
 def test_fail_delayed(numtasks=10):
@@ -94,19 +90,12 @@ def test_fail_delayed(numtasks=10):
         assert isinstance(
             e, TypeError), "Expected a TypeError, got {}".format(e)
 
-    print("Done")
-
 
 @pytest.mark.local
-def test_retry():
+def test_retry(tmpd_cwd):
     """Test retries via app that succeeds on the Nth retry.
     """
 
-    fname = "retry.out"
-    try:
-        os.remove(fname)
-    except OSError:
-        pass
-    fu = succeed_on_retry(fname)
-
-    fu.result()
+    fpath = tmpd_cwd / "retry.out"
+    sout = str(tmpd_cwd / "stdout")
+    succeed_on_retry(str(fpath), stdout=sout).result()

parsl/tests/test_serialization/test_3495_deserialize_managerlost.py

@@ -0,0 +1,47 @@
+import os
+import signal
+
+import pytest
+
+import parsl
+from parsl import Config, HighThroughputExecutor
+from parsl.executors.high_throughput.errors import ManagerLost
+
+
+@parsl.python_app
+def get_manager_pgid():
+    import os
+    return os.getpgid(os.getpid())
+
+
+@parsl.python_app
+def lose_manager():
+    import os
+    import signal
+
+    manager_pid = os.getppid()
+    os.kill(manager_pid, signal.SIGSTOP)
+
+
+@pytest.mark.local
+def test_manager_lost_system_failure(tmpd_cwd):
+    hte = HighThroughputExecutor(
+        label="htex_local",
+        address="127.0.0.1",
+        max_workers_per_node=2,
+        cores_per_worker=1,
+        worker_logdir_root=str(tmpd_cwd),
+        heartbeat_period=1,
+        heartbeat_threshold=1,
+    )
+    c = Config(executors=[hte], strategy='simple', strategy_period=0.1)
+
+    with parsl.load(c):
+        manager_pgid = get_manager_pgid().result()
+        try:
+            with pytest.raises(ManagerLost):
+                lose_manager().result()
+        finally:
+            # Allow process to clean itself up
+            os.killpg(manager_pgid, signal.SIGCONT)
+            os.killpg(manager_pgid, signal.SIGTERM)

parsl/tests/test_staging/test_file.py

@@ -22,11 +22,11 @@ def test_files():
 
 
 @pytest.mark.local
-def test_open():
-    with open('test-open.txt', 'w') as tfile:
-        tfile.write('Hello')
+def test_open(tmpd_cwd):
+    fpath = tmpd_cwd / 'test-open.txt'
+    fpath.write_text('Hello')
 
-    pfile = File('test-open.txt')
+    pfile = File(fpath)
 
-    with open(str(pfile), 'r') as opfile:
-        assert (opfile.readlines()[0] == 'Hello')
+    with open(pfile) as opfile:
+        assert (opfile.read() == 'Hello')

parsl/version.py

@@ -3,4 +3,4 @@
 Year.Month.Day[alpha/beta/..]
 Alphas will be numbered like this -> 2024.12.10a0
 """
-VERSION = '2024.06.24'
+VERSION = '2024.07.01'

{parsl-2024.6.24.data → parsl-2024.7.1.data}/scripts/interchange.py

@@ -17,6 +17,7 @@ import zmq
 
 from parsl import curvezmq
 from parsl.app.errors import RemoteExceptionWrapper
+from parsl.executors.high_throughput.errors import ManagerLost, VersionMismatch
 from parsl.executors.high_throughput.manager_record import ManagerRecord
 from parsl.monitoring.message_type import MessageType
 from parsl.process_loggers import wrap_with_logs
@@ -31,32 +32,6 @@ LOGGER_NAME = "interchange"
 logger = logging.getLogger(LOGGER_NAME)
 
 
-class ManagerLost(Exception):
-    ''' Task lost due to manager loss. Manager is considered lost when multiple heartbeats
-    have been missed.
-    '''
-    def __init__(self, manager_id: bytes, hostname: str) -> None:
-        self.manager_id = manager_id
-        self.tstamp = time.time()
-        self.hostname = hostname
-
-    def __str__(self) -> str:
-        return "Task failure due to loss of manager {} on host {}".format(self.manager_id.decode(), self.hostname)
-
-
-class VersionMismatch(Exception):
-    ''' Manager and Interchange versions do not match
-    '''
-    def __init__(self, interchange_version: str, manager_version: str):
-        self.interchange_version = interchange_version
-        self.manager_version = manager_version
-
-    def __str__(self) -> str:
-        return "Manager version info {} does not match interchange version info {}, causing a critical failure".format(
-            self.manager_version,
-            self.interchange_version)
-
-
 class Interchange:
     """ Interchange is a task orchestrator for distributed systems.
 

{parsl-2024.6.24.dist-info → parsl-2024.7.1.dist-info}/METADATA

@@ -1,9 +1,9 @@
 Metadata-Version: 2.1
 Name: parsl
-Version: 2024.6.24
+Version: 2024.7.1
 Summary: Simple data dependent workflows in Python
 Home-page: https://github.com/Parsl/parsl
-Download-URL: https://github.com/Parsl/parsl/archive/2024.06.24.tar.gz
+Download-URL: https://github.com/Parsl/parsl/archive/2024.07.01.tar.gz
 Author: The Parsl Team
 Author-email: parsl@googlegroups.com
 License: Apache 2.0

{parsl-2024.6.24.dist-info → parsl-2024.7.1.dist-info}/RECORD

@@ -8,7 +8,7 @@ parsl/multiprocessing.py,sha256=MyaEcEq-Qf860u7V98u-PZrPNdtzOZL_NW6EhIJnmfQ,1937
 parsl/process_loggers.py,sha256=uQ7Gd0W72Jz7rrcYlOMfLsAEhkRltxXJL2MgdduJjEw,1136
 parsl/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 parsl/utils.py,sha256=91FjQiTUY383ueAjkBAgE21My9nba6SP2a2SrbB1r1Q,11250
-parsl/version.py,sha256=Oe-zqn8K6f0j2CiOdcXe-52-JTc_rWoNfhOpwvqryyg,131
+parsl/version.py,sha256=rymKA_7RPC0NJoPK5DYnRc2K1WmH8LD0xsv3iQyTwDA,131
 parsl/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 parsl/app/app.py,sha256=D5Ok_gt99mlclM_QfZbquHUBkibyG4tYdUN9ijRwUnQ,8345
 parsl/app/bash.py,sha256=jm2AvePlCT9DZR7H_4ANDWxatp5dN_22FUlT_gWhZ-g,5528
@@ -79,9 +79,9 @@ parsl/executors/flux/execute_parsl_task.py,sha256=gRN7F4HhdrKQ-bvn4wXrquBzFOp_9W
 parsl/executors/flux/executor.py,sha256=gPq49CQwtSZYZggLZ0dCXdpUlllKHJbvR8WRKeGh9xE,16977
 parsl/executors/flux/flux_instance_manager.py,sha256=2KVcphlybF-ALYD_3_YjMUi0f5LkjdoJOT_783CW4H0,2036
 parsl/executors/high_throughput/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-parsl/executors/high_throughput/errors.py,sha256=77ZGrw9suLh9tSWjyhCaIvnC9nRAOmrXsZmvHM6nT68,626
-parsl/executors/high_throughput/executor.py,sha256=iRmAdQpHpmC0UDC5jDZ0O-BlZe_RhfItlqL5RIiD7os,37039
-parsl/executors/high_throughput/interchange.py,sha256=6avQQ8Ljtmuzpa5yjClswqdVEBPDnNBeKb_yn0XbVW4,31462
+parsl/executors/high_throughput/errors.py,sha256=Sak8e8UpiEcXefUjMHbhyXc4Rn7kJtOoh7L8wreBQdk,1638
+parsl/executors/high_throughput/executor.py,sha256=XO0QkRdQIXYUOdabTTIJ6HIlMai0Tvu78bYHMFT-tNc,37061
+parsl/executors/high_throughput/interchange.py,sha256=IRuiaBmks_R4cU-Sx0Q_Fjv4PdFtzU05GiPdeJstOoA,30578
 parsl/executors/high_throughput/manager_record.py,sha256=9XppKjDW0DJ7SMkPNxsiDs-HvXGPLrTg6Ceyh4b6gNs,433
 parsl/executors/high_throughput/monitoring_info.py,sha256=HC0drp6nlXQpAop5PTUKNjdXMgtZVvrBL0JzZJebPP4,298
 parsl/executors/high_throughput/mpi_executor.py,sha256=B2CR1pHaGQzIwTrQ-_i08NZG-NwS6yr8y7nxPaa_rkA,3760
@@ -301,8 +301,8 @@ parsl/tests/test_bash_apps/test_error_codes.py,sha256=jJ3BwhFpvTGKElKyuiCMWFeBaV
 parsl/tests/test_bash_apps/test_keyword_overlaps.py,sha256=8bfN2qw4uXJsYquppR1lZQrYW834AZc3zjYIIHTfDoE,209
 parsl/tests/test_bash_apps/test_kwarg_storage.py,sha256=OMMD3sKSngBSjVCHK9wju0hHzszOqbYuWtscyMuh5_8,720
 parsl/tests/test_bash_apps/test_memoize.py,sha256=gFhDNFxdRv8DNtErbwtdEvAph6SDFPaWY0tABZGS4I4,1383
-parsl/tests/test_bash_apps/test_memoize_ignore_args.py,sha256=ffABk6psbjGYatZiUicb-BYLmzqnxbUCNhMh0h4Ctus,1322
-parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py,sha256=8geUkrr09Oc4ZfPklf-sHl5WErVjlfhuQvV7KJ_cOhM,1362
+parsl/tests/test_bash_apps/test_memoize_ignore_args.py,sha256=dCDvf_iVuU5aq5gLlOUwcCZTbWtNJ4Uj0Zjx1ZbBOhQ,1257
+parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py,sha256=3cMYYNhSncDshWfbbyMld5z1ZrJHPpxz_0u8DMBgRdA,1341
 parsl/tests/test_bash_apps/test_multiline.py,sha256=stpMEv2eopGG-ietxjUtD5gYMOVpwPdLauDizjUfTdA,1082
 parsl/tests/test_bash_apps/test_pipeline.py,sha256=1kQDD8-Dh5H9SKFcKHzN_mSrdxAV_VYzk8ZnDyna3l8,2444
 parsl/tests/test_bash_apps/test_std_uri.py,sha256=CvAt8BUhNl2pA5chq9YyhkD6eo2IUH6PjWfe3SQ-YRU,3752
@@ -330,7 +330,7 @@ parsl/tests/test_error_handling/test_fail.py,sha256=xx4TGWfL7le4cQ9nvnUkrlmKQJks
 parsl/tests/test_error_handling/test_python_walltime.py,sha256=rdmGZHIkuann2Njt3i62odKJ0FaODGr7-L96rOXNVYg,950
 parsl/tests/test_error_handling/test_rand_fail.py,sha256=crFg4GmwdDpvx49_7w5Xt2P7H2R_V9f6i1Ar-QkASuU,3864
 parsl/tests/test_error_handling/test_resource_spec.py,sha256=bk0h2KRZ1lKga_dfhkqq4-tvUJimPtO6gJikUzXJJrU,1565
-parsl/tests/test_error_handling/test_retries.py,sha256=Hgy-1y9nx-unB4KE2-Em3OUvdWxoYzAWq-EY7ImEgIE,2446
+parsl/tests/test_error_handling/test_retries.py,sha256=zJ9D2hrvXQURnK2OIf5LfQFcSDVZ8rhdpp6peGccY7s,2372
 parsl/tests/test_error_handling/test_retry_handler.py,sha256=8fMHffMBLhRyNreIqkrwamx9TYRZ498uVYNlkcbAoLU,1407
 parsl/tests/test_error_handling/test_retry_handler_failure.py,sha256=GaGtZZCB9Wb7ieShqTrxUFEUSKy07ZZWytCY4Qixk9Y,552
 parsl/tests/test_error_handling/test_serialization_fail.py,sha256=5nnGyaOH0Quyjo3eTKkDfAvYcNYxL8OfMi1KccyncaM,647
@@ -427,6 +427,7 @@ parsl/tests/test_scaling/test_scale_down_htex_unregistered.py,sha256=4DYZB9BMDzy
 parsl/tests/test_scaling/test_shutdown_scalein.py,sha256=Jzi0OH7UE6qvQ4ZpsfHu8lySpkMDgorn2elAzMNE6wI,2397
 parsl/tests/test_serialization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 parsl/tests/test_serialization/test_2555_caching_deserializer.py,sha256=jEXJvbriaLVI7frV5t-iJRKYyeQ7a9_-t3X9lhhBWQo,767
+parsl/tests/test_serialization/test_3495_deserialize_managerlost.py,sha256=23phMEstEWWQUHxlyZh4Ta1DC94by8f_-OYCcykyNu8,1144
 parsl/tests/test_serialization/test_basic.py,sha256=4_1Rkq5tNl9EC0nfneF8kHTws7I0E6ovE_0DE97BEfU,544
 parsl/tests/test_serialization/test_htex_code_cache.py,sha256=dd0XwlNDn6Lgj6-nHHjYWzl1FnhFLY_8Buxj77dyZ28,1840
 parsl/tests/test_serialization/test_pack_resource_spec.py,sha256=-Vtyh8KyezZw8e7M2Z4m3LawY1Au4U-H3KRmVKXSut0,641
@@ -440,7 +441,7 @@ parsl/tests/test_staging/test_1316.py,sha256=eS0e2BDM2vmPNF60aDr35wcuGgDPfXjTjRV
 parsl/tests/test_staging/test_docs_1.py,sha256=HxFoBYRNkoJoCDIok9QEIDJLICmaF3RCklSWYtG8BEQ,628
 parsl/tests/test_staging/test_docs_2.py,sha256=DrxoUVowwzdQebewfyQ6v-IHVFJfs5qGzWVQ4UVSbkA,464
 parsl/tests/test_staging/test_elaborate_noop_file.py,sha256=8FHXraFrXDBB2wsKx15AQ6vOgpWwtDL6O6PejOkfdOM,2448
-parsl/tests/test_staging/test_file.py,sha256=Dqen1RJ-uLfzX8xIyJN2Qw3oVy4cFkQQVh6KC72xFDA,950
+parsl/tests/test_staging/test_file.py,sha256=Jsmn-4jaIuMz6ocmACMJmylx-thKky7QGWISkl4Mxjs,924
 parsl/tests/test_staging/test_file_apps.py,sha256=zTwLAf4R-lFLoqeyz9ZfFeVTs9PL9dmpKjeZEVG7C2s,1540
 parsl/tests/test_staging/test_file_staging.py,sha256=PTBZhTQJsNtUi38uUZOdIb8yw18-qxMoY9GFodzPYuE,674
 parsl/tests/test_staging/test_output_chain_filenames.py,sha256=9Mxfl9oU_x1ZSP8JSxT_t4WFCfDTprLjSeFNMm4vVxA,894
@@ -464,13 +465,13 @@ parsl/usage_tracking/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hS
 parsl/usage_tracking/api.py,sha256=iaCY58Dc5J4UM7_dJzEEs871P1p1HdxBMtNGyVdzc9g,1821
 parsl/usage_tracking/levels.py,sha256=xbfzYEsd55KiZJ-mzNgPebvOH4rRHum04hROzEf41tU,291
 parsl/usage_tracking/usage.py,sha256=qNEJ7nPimqd3Y7OWFLdYmNwJ6XDKlyfV_fTzasxsQw8,8690
-parsl-2024.6.24.data/scripts/exec_parsl_function.py,sha256=RUkJ4JSJAjr7YyRZ58zhMdg8cR5dVV9odUl3AuzNf3k,7802
-parsl-2024.6.24.data/scripts/interchange.py,sha256=kI1fSF30txw_eEicPSsxbycuz6Sdxiiyy2xrrk7jlZU,31449
-parsl-2024.6.24.data/scripts/parsl_coprocess.py,sha256=zrVjEqQvFOHxsLufPi00xzMONagjVwLZbavPM7bbjK4,5722
-parsl-2024.6.24.data/scripts/process_worker_pool.py,sha256=weug6_LAMbqEKQhiI6ZMg8r3e-XBDw1-L5_COEt7caM,41879
-parsl-2024.6.24.dist-info/LICENSE,sha256=tAkwu8-AdEyGxGoSvJ2gVmQdcicWw3j1ZZueVV74M-E,11357
-parsl-2024.6.24.dist-info/METADATA,sha256=--saDEksktTAsMhTeFRsbVuLvONDrSTQ9-mFrcTUaHU,4124
-parsl-2024.6.24.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-parsl-2024.6.24.dist-info/entry_points.txt,sha256=XqnsWDYoEcLbsMcpnYGKLEnSBmaIe1YoM5YsBdJG2tI,176
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