parsl 2024.10.28__py3-none-any.whl → 2024.11.11__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- parsl/channels/base.py +6 -46
- parsl/channels/errors.py +0 -67
- parsl/channels/local/local.py +5 -56
- parsl/dataflow/dflow.py +6 -61
- parsl/executors/high_throughput/executor.py +0 -1
- parsl/executors/high_throughput/mpi_resource_management.py +0 -12
- parsl/executors/taskvine/manager.py +6 -0
- parsl/executors/taskvine/manager_config.py +5 -0
- parsl/monitoring/monitoring.py +23 -26
- parsl/monitoring/radios.py +4 -17
- parsl/monitoring/remote.py +3 -5
- parsl/providers/__init__.py +0 -2
- parsl/providers/base.py +1 -1
- parsl/providers/cluster_provider.py +1 -4
- parsl/providers/condor/condor.py +1 -4
- parsl/providers/grid_engine/grid_engine.py +1 -4
- parsl/providers/lsf/lsf.py +1 -4
- parsl/providers/pbspro/pbspro.py +1 -4
- parsl/providers/slurm/slurm.py +1 -4
- parsl/providers/torque/torque.py +1 -4
- parsl/tests/configs/user_opts.py +0 -7
- parsl/tests/conftest.py +4 -4
- parsl/tests/site_tests/site_config_selector.py +1 -6
- parsl/tests/test_bash_apps/test_basic.py +3 -0
- parsl/tests/test_bash_apps/test_error_codes.py +4 -0
- parsl/tests/test_bash_apps/test_kwarg_storage.py +1 -0
- parsl/tests/test_bash_apps/test_memoize.py +2 -6
- parsl/tests/test_bash_apps/test_memoize_ignore_args.py +3 -0
- parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py +1 -0
- parsl/tests/test_bash_apps/test_multiline.py +1 -0
- parsl/tests/test_bash_apps/test_stdout.py +2 -0
- parsl/tests/test_channels/test_local_channel.py +0 -19
- parsl/tests/test_docs/test_from_slides.py +3 -0
- parsl/tests/test_docs/test_kwargs.py +3 -0
- parsl/tests/test_monitoring/test_basic.py +13 -1
- parsl/tests/test_providers/test_local_provider.py +0 -135
- parsl/tests/test_providers/test_pbspro_template.py +2 -1
- parsl/tests/test_providers/test_slurm_template.py +2 -1
- parsl/tests/test_python_apps/test_outputs.py +1 -0
- parsl/tests/test_regression/test_226.py +1 -0
- parsl/tests/test_staging/test_docs_1.py +1 -0
- parsl/tests/test_staging/test_output_chain_filenames.py +3 -0
- parsl/tests/test_staging/test_staging_ftp.py +1 -0
- parsl/tests/test_staging/test_staging_https.py +3 -0
- parsl/tests/test_staging/test_staging_stdout.py +2 -0
- parsl/version.py +1 -1
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/METADATA +2 -8
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/RECORD +56 -74
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/WHEEL +1 -1
- parsl/channels/oauth_ssh/__init__.py +0 -0
- parsl/channels/oauth_ssh/oauth_ssh.py +0 -119
- parsl/channels/ssh/__init__.py +0 -0
- parsl/channels/ssh/ssh.py +0 -295
- parsl/channels/ssh_il/__init__.py +0 -0
- parsl/channels/ssh_il/ssh_il.py +0 -85
- parsl/providers/ad_hoc/__init__.py +0 -0
- parsl/providers/ad_hoc/ad_hoc.py +0 -252
- parsl/providers/cobalt/__init__.py +0 -0
- parsl/providers/cobalt/cobalt.py +0 -236
- parsl/providers/cobalt/template.py +0 -17
- parsl/tests/configs/cooley_htex.py +0 -37
- parsl/tests/configs/local_adhoc.py +0 -18
- parsl/tests/configs/theta.py +0 -37
- parsl/tests/manual_tests/test_fan_in_out_htex_remote.py +0 -88
- parsl/tests/sites/test_local_adhoc.py +0 -62
- parsl/tests/test_channels/test_dfk_close.py +0 -26
- parsl/tests/test_providers/test_cobalt_deprecation_warning.py +0 -18
- {parsl-2024.10.28.data → parsl-2024.11.11.data}/scripts/exec_parsl_function.py +0 -0
- {parsl-2024.10.28.data → parsl-2024.11.11.data}/scripts/interchange.py +0 -0
- {parsl-2024.10.28.data → parsl-2024.11.11.data}/scripts/parsl_coprocess.py +0 -0
- {parsl-2024.10.28.data → parsl-2024.11.11.data}/scripts/process_worker_pool.py +0 -0
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/LICENSE +0 -0
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/entry_points.txt +0 -0
- {parsl-2024.10.28.dist-info → parsl-2024.11.11.dist-info}/top_level.txt +0 -0
@@ -1,5 +1,7 @@
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from concurrent.futures import Future
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import pytest
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from parsl import File
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from parsl.app.app import bash_app
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@@ -14,6 +16,7 @@ def app2(inputs=(), outputs=(), stdout=None, stderr=None, mock=False):
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return f"echo '{inputs[0]}' > {outputs[0]}"
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@pytest.mark.shared_fs
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def test_behavior(tmpd_cwd):
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expected_path = str(tmpd_cwd / "simple-out.txt")
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app1_future = app1(
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@pytest.mark.cleannet
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@pytest.mark.staging_required
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def test_staging_https_cleannet(tmpd_cwd):
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unsorted_file = File(_unsorted_url)
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sorted_file = File(tmpd_cwd / 'sorted.txt')
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@pytest.mark.cleannet
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@pytest.mark.staging_required
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def test_staging_https_kwargs(tmpd_cwd):
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unsorted_file = File(_unsorted_url)
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sorted_file = File(tmpd_cwd / 'sorted.txt')
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@pytest.mark.cleannet
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@pytest.mark.staging_required
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def test_staging_https_args(tmpd_cwd):
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unsorted_file = File(_unsorted_url)
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sorted_file = File(tmpd_cwd / 'sorted.txt')
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@@ -15,6 +15,7 @@ def output_to_stds(*, stdout=parsl.AUTO_LOGNAME, stderr=parsl.AUTO_LOGNAME):
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return "echo hello ; echo goodbye >&2"
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@pytest.mark.staging_required
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def test_stdout_staging_file(tmpd_cwd, caplog):
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basename = str(tmpd_cwd) + "/stdout.txt"
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stdout_file = File("file://" + basename)
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assert record.levelno < logging.ERROR
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@pytest.mark.staging_required
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def test_stdout_stderr_staging_zip(tmpd_cwd, caplog):
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zipfile_name = str(tmpd_cwd) + "/staging.zip"
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stdout_relative_path = "somewhere/test-out.txt"
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parsl/version.py
CHANGED
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Metadata-Version: 2.1
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Name: parsl
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Version: 2024.
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Version: 2024.11.11
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Summary: Simple data dependent workflows in Python
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Home-page: https://github.com/Parsl/parsl
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Download-URL: https://github.com/Parsl/parsl/archive/2024.
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Download-URL: https://github.com/Parsl/parsl/archive/2024.11.11.tar.gz
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Author: The Parsl Team
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Author-email: parsl@googlegroups.com
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License: Apache 2.0
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@@ -38,7 +38,6 @@ Requires-Dist: plotly; extra == "all"
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Requires-Dist: python-daemon; extra == "all"
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Requires-Dist: boto3; extra == "all"
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Requires-Dist: kubernetes; extra == "all"
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Requires-Dist: oauth-ssh>=0.9; extra == "all"
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Requires-Dist: ipython<=8.6.0; extra == "all"
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Requires-Dist: nbsphinx; extra == "all"
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Requires-Dist: sphinx<7.2,>=7.1; extra == "all"
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Requires-Dist: proxystore; extra == "all"
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Requires-Dist: radical.pilot==1.60; extra == "all"
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Requires-Dist: radical.utils==1.60; extra == "all"
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Requires-Dist: paramiko; extra == "all"
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Provides-Extra: aws
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Requires-Dist: boto3; extra == "aws"
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Provides-Extra: azure
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Requires-Dist: kubernetes; extra == "kubernetes"
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Provides-Extra: monitoring
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Requires-Dist: sqlalchemy<2,>=1.4; extra == "monitoring"
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Provides-Extra: oauth_ssh
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Requires-Dist: oauth-ssh>=0.9; extra == "oauth-ssh"
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Provides-Extra: proxystore
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Requires-Dist: proxystore; extra == "proxystore"
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Provides-Extra: radical-pilot
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Requires-Dist: radical.pilot==1.60; extra == "radical-pilot"
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Requires-Dist: radical.utils==1.60; extra == "radical-pilot"
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Provides-Extra: ssh
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Requires-Dist: paramiko; extra == "ssh"
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Provides-Extra: visualization
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Requires-Dist: pydot; extra == "visualization"
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Requires-Dist: networkx<2.6,>=2.5; extra == "visualization"
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@@ -8,7 +8,7 @@ parsl/multiprocessing.py,sha256=MyaEcEq-Qf860u7V98u-PZrPNdtzOZL_NW6EhIJnmfQ,1937
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parsl/process_loggers.py,sha256=uQ7Gd0W72Jz7rrcYlOMfLsAEhkRltxXJL2MgdduJjEw,1136
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parsl/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/utils.py,sha256=rMLKeadEsQ9jGwm4ogqiLIXPS3zOAyfznQJXVkJSY8E,13107
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parsl/version.py,sha256=
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parsl/version.py,sha256=YN54GKP_n8ju-yF93YgA58EFPgsqVrPOc-yanh_BEMg,131
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parsl/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/app/app.py,sha256=0gbM4AH2OtFOLsv07I5nglpElcwMSOi-FzdZZfrk7So,8532
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parsl/app/bash.py,sha256=jm2AvePlCT9DZR7H_4ANDWxatp5dN_22FUlT_gWhZ-g,5528
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@@ -18,16 +18,10 @@ parsl/app/python.py,sha256=0hrz2BppVOwwNfh5hnoP70Yv56gSRkIoT-fP9XNb4v4,2331
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parsl/benchmark/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/benchmark/perf.py,sha256=kKXefDozWXSJKSNA7qdfUgEoacA2-R9kSZcI2YvZ5uE,3096
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parsl/channels/__init__.py,sha256=OEZcuNBOxUwmzrHMZOuPvkw4kUxrbJDA99crDk61O90,131
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parsl/channels/base.py,sha256=
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parsl/channels/errors.py,sha256=
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parsl/channels/base.py,sha256=k015EJ96C_nhzfH-pAs4EeEmIi0y_BqkYYl06PDrCeQ,2658
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parsl/channels/errors.py,sha256=AgyPwYjemBh_KjI3P-gXMgDgbvLZUMC2Wf284S_vQ6c,802
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parsl/channels/local/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/channels/local/local.py,sha256=
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parsl/channels/oauth_ssh/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/channels/oauth_ssh/oauth_ssh.py,sha256=6pj3LQAX89p5Lc8NL1Llq2_noi8GS8BItCuRtDp-iCA,3823
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parsl/channels/ssh/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/channels/ssh/ssh.py,sha256=y21at_99Cjo2YNC110bf5dbNsOvAsUA-843LyOPkJH8,10156
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parsl/channels/ssh_il/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/channels/ssh_il/ssh_il.py,sha256=acOXJyqCmgC2nl7zrO_uEu3GpJZMN2l-Af5XfmNMLRs,2783
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parsl/channels/local/local.py,sha256=vtj3kuPvDfUxCjW6RcEmdy2PFDJ3Vz56k6V8-xt_0V4,3305
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parsl/concurrent/__init__.py,sha256=TvIVceJYaJAsxedNBF3Vdo9lEQNHH_j3uxJv0zUjP7w,3288
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parsl/configs/ASPIRE1.py,sha256=eKnmz0QD3V522emtXMjS6Ppeooe5lzcBgCE6cxunbYY,1718
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parsl/configs/Azure.py,sha256=CJms3xWmdb-S3CksbHrPF2TfMxJC5I0faqUKCOzVg0k,1268
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@@ -62,7 +56,7 @@ parsl/data_provider/staging.py,sha256=ZDZuuFg38pjUStegKPcvPsfGp3iMeReMzfU6DSwtJj
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parsl/data_provider/zip.py,sha256=S4kVuH9lxAegRURYbvIUR7EYYBOccyslaqyCrVWUBhw,4497
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parsl/dataflow/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/dataflow/dependency_resolvers.py,sha256=Om8Dgh7a0ZwgXAc6TlhxLSzvxXHDlNNV1aBNiD3JTNY,3325
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parsl/dataflow/dflow.py,sha256=
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parsl/dataflow/dflow.py,sha256=80lfWJnk2SPaDIOqDEwqOHx031wu_74SdWBMyiiorgY,65443
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parsl/dataflow/errors.py,sha256=9SxVhIJY_53FQx8x4OU8UA8nd7lvUbDllH7KfMXpYaY,2177
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parsl/dataflow/futures.py,sha256=08LuP-HFiHBIZmeKCjlsazw_WpQ5fwevrU2_WbidkYw,6080
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parsl/dataflow/memoization.py,sha256=l9uw1Bu50GucBF70M5relpGKFkE4dIM9T3R1KrxW0v0,9583
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parsl/executors/flux/flux_instance_manager.py,sha256=5T3Rp7ZM-mlT0Pf0Gxgs5_YmnaPrSF9ec7zvRfLfYJw,2129
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parsl/executors/high_throughput/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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parsl/executors/high_throughput/errors.py,sha256=Sak8e8UpiEcXefUjMHbhyXc4Rn7kJtOoh7L8wreBQdk,1638
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parsl/executors/high_throughput/executor.py,sha256=
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parsl/executors/high_throughput/executor.py,sha256=B9p843K9mmYbrkbIKIgryb_wC1XhRvYzHxoTaFTXLUw,37455
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parsl/executors/high_throughput/interchange.py,sha256=DQjIb7SpBAfHUFr5kY9f_9lJhH_ZX0CktoFu7yyTXBQ,30111
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parsl/executors/high_throughput/manager_record.py,sha256=yn3L8TUJFkgm2lX1x0SeS9mkvJowC0s2VIMCFiU7ThM,455
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parsl/executors/high_throughput/manager_selector.py,sha256=UKcUE6v0tO7PDMTThpKSKxVpOpOUilxDL7UbNgpZCxo,2116
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parsl/executors/high_throughput/monitoring_info.py,sha256=HC0drp6nlXQpAop5PTUKNjdXMgtZVvrBL0JzZJebPP4,298
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parsl/executors/high_throughput/mpi_executor.py,sha256=khvGz56A8zU8XAY-R4TtqqiJB8B10mkVTXD_9xtrXgo,4696
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parsl/executors/high_throughput/mpi_prefix_composer.py,sha256=DmpKugANNa1bdYlqQBLHkrFc15fJpefPPhW9hkAlh1s,4308
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parsl/executors/high_throughput/mpi_resource_management.py,sha256=
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parsl/executors/high_throughput/mpi_resource_management.py,sha256=8Xk2COoVNm1VKbFkKa1uE92zl8hfreO2MzfVOuDKnUQ,7771
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parsl/executors/high_throughput/probe.py,sha256=TNpGTXb4_DEeg_h-LHu4zEKi1-hffboxvKcZUl2OZGk,2751
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parsl/executors/high_throughput/process_worker_pool.py,sha256=wpfKhA1hqbzfSnRfKn1WPFE_ZRd0LF07dBaK0YDXamg,42934
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parsl/executors/high_throughput/zmq_pipes.py,sha256=tAjQB3aNVMuTXziN3dbJWre46YpXgliD55qMBbhYTLU,8581
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parsl/executors/taskvine/executor.py,sha256=y1x44p_GRlaOqLr0J92ungU3CuDeull6MW-lEedzu2M,31164
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parsl/executors/taskvine/factory.py,sha256=rWpEoFphLzqO3HEYyDEbQa14iyvgkdZg7hLZuaY39gQ,2638
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parsl/executors/taskvine/factory_config.py,sha256=AbE2fN2snrF5ITYrrS4DnGn2XkJHUFr_17DYHDHIwq0,3693
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|
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parsl/tests/test_bash_apps/test_basic.py,sha256=
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parsl/tests/test_bash_apps/test_basic.py,sha256=AD5zBVBSR5a1Z3OIt-U-SGlWi4D1MV9PuBsNrB7PKys,2529
|
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|
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parsl/tests/test_bash_apps/test_error_codes.py,sha256=zcWwSGk2G3P_8vGyBrif_nAKAKR3_bB3VCeT7ynD3dk,4053
|
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parsl/tests/test_bash_apps/test_inputs_default.py,sha256=6UYdi8bqbTS-cx2WB2v5lVA9smTL55Sl3wgkQvlxJ0I,563
|
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parsl/tests/test_bash_apps/test_keyword_overlaps.py,sha256=8bfN2qw4uXJsYquppR1lZQrYW834AZc3zjYIIHTfDoE,209
|
293
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parsl/tests/test_bash_apps/test_kwarg_storage.py,sha256=
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parsl/tests/test_bash_apps/test_memoize.py,sha256=
|
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parsl/tests/test_bash_apps/test_memoize_ignore_args.py,sha256=
|
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parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py,sha256=
|
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|
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parsl/tests/test_bash_apps/test_multiline.py,sha256=
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parsl/tests/test_bash_apps/test_kwarg_storage.py,sha256=pTz1nu-vUcYBEE96TbXlyL8NBnMi-hImwiv5xpnTfMM,743
|
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parsl/tests/test_bash_apps/test_memoize.py,sha256=77Cq33yxfDJWH5jLqHRF6Ipy0-a5wwnZwM4wJNAhPbc,1151
|
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+
parsl/tests/test_bash_apps/test_memoize_ignore_args.py,sha256=o7AEIIiZVw5ZxlwQVMQLWBQGdXAM32gEXaZgXZpP-Ts,1295
|
280
|
+
parsl/tests/test_bash_apps/test_memoize_ignore_args_regr.py,sha256=9t6TRvMl2kNQMGLduayMDXCQsp5eXrrs8NyryOEs00s,1364
|
281
|
+
parsl/tests/test_bash_apps/test_multiline.py,sha256=8a0yfqgZz3WyijNmAiJp2ib1UMBMFBlbsrRRF6sda8Y,1105
|
298
282
|
parsl/tests/test_bash_apps/test_pipeline.py,sha256=1kQDD8-Dh5H9SKFcKHzN_mSrdxAV_VYzk8ZnDyna3l8,2444
|
299
283
|
parsl/tests/test_bash_apps/test_std_uri.py,sha256=CvAt8BUhNl2pA5chq9YyhkD6eo2IUH6PjWfe3SQ-YRU,3752
|
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parsl/tests/test_bash_apps/test_stdout.py,sha256=
|
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|
+
parsl/tests/test_bash_apps/test_stdout.py,sha256=lNBzCJGst0IhKaSl8CM8-mTJ5eaK7hTlZ8gY-M2TDBU,3244
|
301
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|
parsl/tests/test_channels/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
302
|
-
parsl/tests/test_channels/test_dfk_close.py,sha256=n7IF3Ud_vejg0VNRnvEgxCLmwMvPVvLbXvJdw-Mz_lw,628
|
303
286
|
parsl/tests/test_channels/test_large_output.py,sha256=PGeNSW_sN5mR7KF1hVL2CPfktydYxo4oNz1wVQ-ENN0,595
|
304
|
-
parsl/tests/test_channels/test_local_channel.py,sha256=
|
287
|
+
parsl/tests/test_channels/test_local_channel.py,sha256=ojMvMbUMFe6OsrrcYYaqytGeKPQjx291O5MTn5X7-Xc,431
|
305
288
|
parsl/tests/test_checkpointing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
306
289
|
parsl/tests/test_checkpointing/test_periodic.py,sha256=nfMgrG7sZ8rkMu6iOHS6lp_iTU4IsOyQLQ2Gur_FMmE,1509
|
307
290
|
parsl/tests/test_checkpointing/test_python_checkpoint_1.py,sha256=k7_Zy4CV9OQt4ORYFCdyX53c4B0YPiwEIi35LhvLB2w,746
|
@@ -312,8 +295,8 @@ parsl/tests/test_checkpointing/test_regression_233.py,sha256=jii7BKuygK6KMIGtg4I
|
|
312
295
|
parsl/tests/test_checkpointing/test_regression_239.py,sha256=xycW1_IwVC55L25oMES_OzJU58TN5BoMvRUZ_xB69jU,2441
|
313
296
|
parsl/tests/test_checkpointing/test_task_exit.py,sha256=KLR2BFm3jyh4i1UMC1jrohTIVPHVXmDS4DWYsjkJV5k,1705
|
314
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|
parsl/tests/test_docs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
315
|
-
parsl/tests/test_docs/test_from_slides.py,sha256=
|
316
|
-
parsl/tests/test_docs/test_kwargs.py,sha256=
|
298
|
+
parsl/tests/test_docs/test_from_slides.py,sha256=KcULKUfmKEkSMzSL1HcyEhAF_OoDScu4Xtvn2rROO4A,698
|
299
|
+
parsl/tests/test_docs/test_kwargs.py,sha256=A8kmPIGoM0E9mN8TcAeA93UbX62etEk6p3I18N5nLpk,963
|
317
300
|
parsl/tests/test_docs/test_tutorial_1.py,sha256=2k_owiw39HJcm1i3YGYna9cNnMS0hpnFbEEdhP2xpxU,1437
|
318
301
|
parsl/tests/test_docs/test_workflow1.py,sha256=UrU9axV_cXqhD2GEQ_riJ34icJyNxqJ28eVT2BpG8kQ,976
|
319
302
|
parsl/tests/test_docs/test_workflow2.py,sha256=qeI789Qr9qtSG1DGhyt-Y_3KUcPltQfIyQVeZ73DeX4,1149
|
@@ -349,7 +332,7 @@ parsl/tests/test_htex/test_worker_failure.py,sha256=Uz-RHI-LK78FMjXUvrUFmo4iYfmp
|
|
349
332
|
parsl/tests/test_htex/test_zmq_binding.py,sha256=Bq1HHuMxBE_AcaP1VZ-RqE4euCHO__Du05b2UZ5H1RA,3950
|
350
333
|
parsl/tests/test_monitoring/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
351
334
|
parsl/tests/test_monitoring/test_app_names.py,sha256=ayyxySGWpKSe9dDw2UeJo1dicxjpALRuLsJfprZV4Eg,2174
|
352
|
-
parsl/tests/test_monitoring/test_basic.py,sha256=
|
335
|
+
parsl/tests/test_monitoring/test_basic.py,sha256=VdF6JHfqsEOIMg-ysIAREgygZIjHWNDVLNVQ7jhWxmQ,4592
|
353
336
|
parsl/tests/test_monitoring/test_db_locks.py,sha256=3s3c1xhKo230ZZIJ3f1Ca4U7LcEdXnanOGVXQyNlk2U,2895
|
354
337
|
parsl/tests/test_monitoring/test_fuzz_zmq.py,sha256=--3-pQUvXXbkr8v_BEJoPvVvNly1oXvrD2nJh6yl_0M,3436
|
355
338
|
parsl/tests/test_monitoring/test_htex_init_blocks_vs_monitoring.py,sha256=BAnl80waEaE41pvtpYD-AbNgdfF7QBgVwcCN9IsFPTM,2746
|
@@ -365,12 +348,11 @@ parsl/tests/test_mpi_apps/test_mpi_scheduler.py,sha256=YdV8A-m67DHk9wxgNpj69wwGE
|
|
365
348
|
parsl/tests/test_mpi_apps/test_mpiex.py,sha256=mlFdHK3A1B6NsEhxTQQX8lhs9qVza36FMG99vNrBRW4,2021
|
366
349
|
parsl/tests/test_mpi_apps/test_resource_spec.py,sha256=5k6HM2jtb6sa7jetpI-Tl1nPQiN33VLaM7YT10c307E,3756
|
367
350
|
parsl/tests/test_providers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
368
|
-
parsl/tests/test_providers/test_cobalt_deprecation_warning.py,sha256=UN2W6xJxuLx2euPqArORKFEU2VXez9_PYqq-0rZHanQ,391
|
369
351
|
parsl/tests/test_providers/test_kubernetes_provider.py,sha256=AzCHfNz2HJwjP9BfxKH-XPaTHJCLXFErDMlQ_Ir8qRU,3861
|
370
|
-
parsl/tests/test_providers/test_local_provider.py,sha256=
|
371
|
-
parsl/tests/test_providers/test_pbspro_template.py,sha256
|
352
|
+
parsl/tests/test_providers/test_local_provider.py,sha256=3gTqz49oGWGOc7PfivFFb7Sf1QKvgPHnbX_rpJePbQE,2150
|
353
|
+
parsl/tests/test_providers/test_pbspro_template.py,sha256=003B1rbgZsP1XQC8Iyn08sqMvnZ-xe3E9uBvgdTUD4s,879
|
372
354
|
parsl/tests/test_providers/test_slurm_instantiate.py,sha256=eW3pEZRIzZO1-eKFrBc7N5uoN5otwghgbqut74Kyqoc,500
|
373
|
-
parsl/tests/test_providers/test_slurm_template.py,sha256=
|
355
|
+
parsl/tests/test_providers/test_slurm_template.py,sha256=SL0IK-WopeOjlqk2DAqraP56kGIjSK9YQcedoG1GRKI,925
|
374
356
|
parsl/tests/test_providers/test_submiterror_deprecation.py,sha256=m1L8dV_xrbjQsNv-qdj5vLpsYBxX-C4aJxurqwZymio,502
|
375
357
|
parsl/tests/test_python_apps/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
376
358
|
parsl/tests/test_python_apps/test_arg_input_types.py,sha256=JXpfHiu8lr9BN6u1OzqFvGwBhxzsGTPMewHx6Wdo-HI,670
|
@@ -396,7 +378,7 @@ parsl/tests/test_python_apps/test_memoize_4.py,sha256=CdK_vHW5s-phi5KPqcAQm_BRh8
|
|
396
378
|
parsl/tests/test_python_apps/test_memoize_bad_id_for_memo.py,sha256=5v25zdU6koXexRTkccj_3sSSdXqHdsU8ZdNrnZ3ONZU,1436
|
397
379
|
parsl/tests/test_python_apps/test_memoize_ignore_args.py,sha256=u-s6r6Nxpvu_x_Uwputi_QIC1tUnzakDF-LSKiEtl9Q,739
|
398
380
|
parsl/tests/test_python_apps/test_memoize_joinapp.py,sha256=htiNmE0PGVA7_pdwRcZ9Wv5Fh6Bph6EdPmywJi8m1oM,435
|
399
|
-
parsl/tests/test_python_apps/test_outputs.py,sha256=
|
381
|
+
parsl/tests/test_python_apps/test_outputs.py,sha256=5ai9hz5jJEqZxptuFU-E3TObTuBpU9i9HXm1gt21GDY,645
|
400
382
|
parsl/tests/test_python_apps/test_overview.py,sha256=27LlnGOSDRPtDZ04ZZ31GM7BgoEY_WU6N3LGO-u6JOM,454
|
401
383
|
parsl/tests/test_python_apps/test_pipeline.py,sha256=vl5bDAzwW0qoTIarzdkFv7cAuaI7xJIrvx-S-8tFfc8,848
|
402
384
|
parsl/tests/test_python_apps/test_pluggable_future_resolution.py,sha256=KbGT1XvF2pC7VwhzvNACF-qR3ZRMhoJbRLuz7r12w_w,3361
|
@@ -410,7 +392,7 @@ parsl/tests/test_regression/test_1480.py,sha256=sJjcX8O0eL_OG7L3skjT3JaIUyFC-kk0
|
|
410
392
|
parsl/tests/test_regression/test_1606_wait_for_current_tasks.py,sha256=frqPtaiVysevj9nCWoQlAeh9K1jQO5zaahr9ev_Mx_0,1134
|
411
393
|
parsl/tests/test_regression/test_1653.py,sha256=eMXPfTALwQ7k2pGpar-kYed8yKtOj2U2N5ippIvtwGI,564
|
412
394
|
parsl/tests/test_regression/test_221.py,sha256=jOS0EVu_2sbh10eg5hnivPvhNt0my_50vQ7jQYS1Bfg,520
|
413
|
-
parsl/tests/test_regression/test_226.py,sha256=
|
395
|
+
parsl/tests/test_regression/test_226.py,sha256=tVqGAU99RRQqz9KuMgeLVoddot2pRqG2y4daW44RrlE,1110
|
414
396
|
parsl/tests/test_regression/test_2652.py,sha256=R_ZoX7Vgz4H2ionhjm_KWFW-vWt_MlgWV_zdTsT68M0,848
|
415
397
|
parsl/tests/test_regression/test_69a.py,sha256=sRkMT95b7WvFAK1hUy7eNwKnzFNqaX9qESdNmoh0rAo,1902
|
416
398
|
parsl/tests/test_regression/test_854.py,sha256=acFLEciwL0_ZHq6lBtFHRMTEHaPpAf3L4q4_f1LnAAU,1884
|
@@ -438,18 +420,18 @@ parsl/tests/test_shutdown/test_kill_monitoring.py,sha256=S9CnCziBk3sQMKgccqvNUEB
|
|
438
420
|
parsl/tests/test_staging/__init__.py,sha256=WZl9EHSkfYiSoE3Gbulcq2ifmn7IFGUkasJIobL5T5A,208
|
439
421
|
parsl/tests/test_staging/staging_provider.py,sha256=6FDpImkWOLgysqM68NbCAoXZciZokI8dmBWRAxnggBk,3242
|
440
422
|
parsl/tests/test_staging/test_1316.py,sha256=eS0e2BDM2vmPNF60aDr35wcuGgDPfXjTjRV6kyBZOQc,2652
|
441
|
-
parsl/tests/test_staging/test_docs_1.py,sha256=
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423
|
+
parsl/tests/test_staging/test_docs_1.py,sha256=DlMytEswhogtgo7743PYhg0ixC4n4ye4ibdy_nLhess,658
|
442
424
|
parsl/tests/test_staging/test_docs_2.py,sha256=DrxoUVowwzdQebewfyQ6v-IHVFJfs5qGzWVQ4UVSbkA,464
|
443
425
|
parsl/tests/test_staging/test_elaborate_noop_file.py,sha256=8FHXraFrXDBB2wsKx15AQ6vOgpWwtDL6O6PejOkfdOM,2448
|
444
426
|
parsl/tests/test_staging/test_file.py,sha256=Jsmn-4jaIuMz6ocmACMJmylx-thKky7QGWISkl4Mxjs,924
|
445
427
|
parsl/tests/test_staging/test_file_apps.py,sha256=zTwLAf4R-lFLoqeyz9ZfFeVTs9PL9dmpKjeZEVG7C2s,1540
|
446
428
|
parsl/tests/test_staging/test_file_staging.py,sha256=PTBZhTQJsNtUi38uUZOdIb8yw18-qxMoY9GFodzPYuE,674
|
447
|
-
parsl/tests/test_staging/test_output_chain_filenames.py,sha256=
|
448
|
-
parsl/tests/test_staging/test_staging_ftp.py,sha256=
|
429
|
+
parsl/tests/test_staging/test_output_chain_filenames.py,sha256=V3ad_nrQB1ff_aufwHczmmFSM7b9QPrIfyD7OKfZciU,932
|
430
|
+
parsl/tests/test_staging/test_staging_ftp.py,sha256=MIOla-PiLSWlwP9Xl7WG9ZojY89nm7xF50t34R-wrfE,808
|
449
431
|
parsl/tests/test_staging/test_staging_ftp_in_task.py,sha256=kR2XrGvbvVFDpHg53NnjO04kqEksTJjQAMQwYqBdb2M,884
|
450
432
|
parsl/tests/test_staging/test_staging_globus.py,sha256=ds8nDH5dNbI10FV_GxMHyVaY6GPnuPPzkX9IiqROLF0,2339
|
451
|
-
parsl/tests/test_staging/test_staging_https.py,sha256=
|
452
|
-
parsl/tests/test_staging/test_staging_stdout.py,sha256=
|
433
|
+
parsl/tests/test_staging/test_staging_https.py,sha256=Ua79yHlP5bmHke_lOVOp7qIzum1BpBuN1zwqEbdK_lA,3397
|
434
|
+
parsl/tests/test_staging/test_staging_stdout.py,sha256=TgQaphLD25CPKZpvHcmSHZa4MVOowafYOOmxCa81phk,2086
|
453
435
|
parsl/tests/test_staging/test_zip_in.py,sha256=BOG5IL1LpZphVDYM9iAebSshSqkILE9nrVhLhYyT5mg,1141
|
454
436
|
parsl/tests/test_staging/test_zip_out.py,sha256=gfPvu8-e2K72sEBX4-WlGlldxVXKhMLc0dsTqYVOM88,3510
|
455
437
|
parsl/tests/test_staging/test_zip_to_zip.py,sha256=Y4YmmQ5qFGyDQv0PfUZnbwi8xNkeW6uS4Q_A3hLDvNQ,1166
|
@@ -466,13 +448,13 @@ parsl/usage_tracking/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hS
|
|
466
448
|
parsl/usage_tracking/api.py,sha256=iaCY58Dc5J4UM7_dJzEEs871P1p1HdxBMtNGyVdzc9g,1821
|
467
449
|
parsl/usage_tracking/levels.py,sha256=xbfzYEsd55KiZJ-mzNgPebvOH4rRHum04hROzEf41tU,291
|
468
450
|
parsl/usage_tracking/usage.py,sha256=tcoZ2OUjsQVakG8Uu9_HFuEdzpSHyt4JarSRcLGnSMw,8918
|
469
|
-
parsl-2024.
|
470
|
-
parsl-2024.
|
471
|
-
parsl-2024.
|
472
|
-
parsl-2024.
|
473
|
-
parsl-2024.
|
474
|
-
parsl-2024.
|
475
|
-
parsl-2024.
|
476
|
-
parsl-2024.
|
477
|
-
parsl-2024.
|
478
|
-
parsl-2024.
|
451
|
+
parsl-2024.11.11.data/scripts/exec_parsl_function.py,sha256=RUkJ4JSJAjr7YyRZ58zhMdg8cR5dVV9odUl3AuzNf3k,7802
|
452
|
+
parsl-2024.11.11.data/scripts/interchange.py,sha256=6jsxpVgtruFtE_0nMHAZYVF1gvoALBCkprEbUb_YQgg,30098
|
453
|
+
parsl-2024.11.11.data/scripts/parsl_coprocess.py,sha256=zrVjEqQvFOHxsLufPi00xzMONagjVwLZbavPM7bbjK4,5722
|
454
|
+
parsl-2024.11.11.data/scripts/process_worker_pool.py,sha256=Qed0dgUa6375UgWm5h196V0FBdeTdW6iowG9RYDNG9Y,42920
|
455
|
+
parsl-2024.11.11.dist-info/LICENSE,sha256=tAkwu8-AdEyGxGoSvJ2gVmQdcicWw3j1ZZueVV74M-E,11357
|
456
|
+
parsl-2024.11.11.dist-info/METADATA,sha256=cuVmmVJIvqai_5seI7Qr108RZ4QxxwK74gRS0XUPUdM,3848
|
457
|
+
parsl-2024.11.11.dist-info/WHEEL,sha256=bFJAMchF8aTQGUgMZzHJyDDMPTO3ToJ7x23SLJa1SVo,92
|
458
|
+
parsl-2024.11.11.dist-info/entry_points.txt,sha256=XqnsWDYoEcLbsMcpnYGKLEnSBmaIe1YoM5YsBdJG2tI,176
|
459
|
+
parsl-2024.11.11.dist-info/top_level.txt,sha256=PIheYoUFQtF2icLsgOykgU-Cjuwr2Oi6On2jo5RYgRM,6
|
460
|
+
parsl-2024.11.11.dist-info/RECORD,,
|
File without changes
|
@@ -1,119 +0,0 @@
|
|
1
|
-
import logging
|
2
|
-
import socket
|
3
|
-
|
4
|
-
from parsl.channels.ssh.ssh import DeprecatedSSHChannel
|
5
|
-
from parsl.errors import OptionalModuleMissing
|
6
|
-
|
7
|
-
try:
|
8
|
-
import paramiko
|
9
|
-
_ssh_enabled = True
|
10
|
-
except (ImportError, NameError, FileNotFoundError):
|
11
|
-
_ssh_enabled = False
|
12
|
-
|
13
|
-
try:
|
14
|
-
from oauth_ssh.oauth_ssh_token import find_access_token
|
15
|
-
from oauth_ssh.ssh_service import SSHService
|
16
|
-
_oauth_ssh_enabled = True
|
17
|
-
except (ImportError, NameError):
|
18
|
-
_oauth_ssh_enabled = False
|
19
|
-
|
20
|
-
|
21
|
-
logger = logging.getLogger(__name__)
|
22
|
-
|
23
|
-
|
24
|
-
class DeprecatedOAuthSSHChannel(DeprecatedSSHChannel):
|
25
|
-
"""SSH persistent channel. This enables remote execution on sites
|
26
|
-
accessible via ssh. This channel uses Globus based OAuth tokens for authentication.
|
27
|
-
"""
|
28
|
-
|
29
|
-
def __init__(self, hostname, username=None, script_dir=None, envs=None, port=22):
|
30
|
-
''' Initialize a persistent connection to the remote system.
|
31
|
-
We should know at this point whether ssh connectivity is possible
|
32
|
-
|
33
|
-
Args:
|
34
|
-
- hostname (String) : Hostname
|
35
|
-
|
36
|
-
KWargs:
|
37
|
-
- username (string) : Username on remote system
|
38
|
-
- script_dir (string) : Full path to a script dir where
|
39
|
-
generated scripts could be sent to.
|
40
|
-
- envs (dict) : A dictionary of env variables to be set when executing commands
|
41
|
-
- port (int) : Port at which the SSHService is running
|
42
|
-
|
43
|
-
Raises:
|
44
|
-
'''
|
45
|
-
if not _ssh_enabled:
|
46
|
-
raise OptionalModuleMissing(['ssh'],
|
47
|
-
"OauthSSHChannel requires the ssh module and config.")
|
48
|
-
|
49
|
-
if not _oauth_ssh_enabled:
|
50
|
-
raise OptionalModuleMissing(['oauth_ssh'],
|
51
|
-
"OauthSSHChannel requires oauth_ssh module and config.")
|
52
|
-
|
53
|
-
self.hostname = hostname
|
54
|
-
self.username = username
|
55
|
-
self.script_dir = script_dir
|
56
|
-
self.port = port
|
57
|
-
self.envs = {}
|
58
|
-
if envs is not None:
|
59
|
-
self.envs = envs
|
60
|
-
|
61
|
-
try:
|
62
|
-
access_token = find_access_token(hostname)
|
63
|
-
except Exception:
|
64
|
-
logger.exception("Failed to find the access token for {}".format(hostname))
|
65
|
-
raise
|
66
|
-
|
67
|
-
try:
|
68
|
-
self.service = SSHService(hostname, port)
|
69
|
-
self.transport = self.service.login(access_token, username)
|
70
|
-
|
71
|
-
except Exception:
|
72
|
-
logger.exception("Caught an exception in the OAuth authentication step with {}".format(hostname))
|
73
|
-
raise
|
74
|
-
|
75
|
-
self.sftp_client = paramiko.SFTPClient.from_transport(self.transport)
|
76
|
-
|
77
|
-
def execute_wait(self, cmd, walltime=60, envs={}):
|
78
|
-
''' Synchronously execute a commandline string on the shell.
|
79
|
-
|
80
|
-
This command does *NOT* honor walltime currently.
|
81
|
-
|
82
|
-
Args:
|
83
|
-
- cmd (string) : Commandline string to execute
|
84
|
-
|
85
|
-
Kwargs:
|
86
|
-
- walltime (int) : walltime in seconds
|
87
|
-
- envs (dict) : Dictionary of env variables
|
88
|
-
|
89
|
-
Returns:
|
90
|
-
- retcode : Return code from the execution, -1 on fail
|
91
|
-
- stdout : stdout string
|
92
|
-
- stderr : stderr string
|
93
|
-
|
94
|
-
Raises:
|
95
|
-
None.
|
96
|
-
'''
|
97
|
-
|
98
|
-
session = self.transport.open_session()
|
99
|
-
session.setblocking(0)
|
100
|
-
|
101
|
-
nbytes = 1024
|
102
|
-
session.exec_command(self.prepend_envs(cmd, envs))
|
103
|
-
session.settimeout(walltime)
|
104
|
-
|
105
|
-
try:
|
106
|
-
# Wait until command is executed
|
107
|
-
exit_status = session.recv_exit_status()
|
108
|
-
|
109
|
-
stdout = session.recv(nbytes).decode('utf-8')
|
110
|
-
stderr = session.recv_stderr(nbytes).decode('utf-8')
|
111
|
-
|
112
|
-
except socket.timeout:
|
113
|
-
logger.exception("Command failed to execute without timeout limit on {}".format(self))
|
114
|
-
raise
|
115
|
-
|
116
|
-
return exit_status, stdout, stderr
|
117
|
-
|
118
|
-
def close(self) -> None:
|
119
|
-
self.transport.close()
|
parsl/channels/ssh/__init__.py
DELETED
File without changes
|