paradigma 0.3.2__py3-none-any.whl → 0.4.1__py3-none-any.whl

paradigma/ppg/glob_functions/extract_hr_segments.m

@@ -1,37 +0,0 @@
-function [start_idx, end_idx] = extract_hr_segments(label_arr, threshold)
-% Function which calculates the switches between high and low quality. It
-% calculates the length of the high quality parts and returns the correct
-% data indices for every high quality part longer than a specific threshold!
-% Input:
-%   - labelArray: Label array containin of 0 (low-quality) and 1 (high-quality)
-%   - threshold: minimal required length for HR analysis (f.e. 30s = 30*fs=
-%   900 samples
-
-    start_idx = [];
-    end_idx = [];
-    
-    label_arr = [0; label_arr; 0];              % padding to find switches if the label starts or ends with high quality label!
-
-    % Find switches from 0 to 1
-    zero_one_switch = find(diff(label_arr) == 1);
-    
-    % Find switches from 1 to 0
-    one_zero_switch = find(diff(label_arr) == -1);
-    
-    % Ensure the lengths are the same
-    if length(zero_one_switch) ~= length(one_zero_switch)
-        error('Invalid label array');
-    end
-    
-    % Calculate switch lengths for label 1
-    switch_lengths = one_zero_switch - zero_one_switch;
-    
-    % Find switch lengths greater than the threshold
-    long_switches = find(switch_lengths >= threshold);
-    
-    % Assign start and end indices for long switches
-    for i = 1:length(long_switches)
-        start_idx(i) = zero_one_switch(long_switches(i));
-        end_idx(i) = one_zero_switch(long_switches(i))-1;
-    end
-end

paradigma/ppg/glob_functions/extract_overlapping_segments.m

@@ -1,23 +0,0 @@
-function [ppg_indices, imu_indices] = extract_overlapping_segments(t_unix_ppg, t_unix_imu)
-    % K.I. Veldkamp, PhD student AI4P, 29-02-24
-    % Function to extract indices indicating overlapping data between IMU and
-    % PPG segment
-    
-        % Convert UNIX milliseconds to seconds
-        ppg_time = t_unix_ppg / 1000; % Convert milliseconds to seconds
-        imu_time = t_unix_imu / 1000; % Convert milliseconds to seconds
-    
-        % Determine the overlapping time interval
-        start_time = max(ppg_time(1), imu_time(1));
-        end_time = min(ppg_time(end), imu_time(end));
-    
-        % Convert overlapping time interval to indices
-        ppg_start_index = find(ppg_time >= start_time, 1);
-        ppg_end_index = find(ppg_time <= end_time, 1, 'last');
-        imu_start_index = find(imu_time >= start_time, 1);
-        imu_end_index = find(imu_time <= end_time, 1, 'last');
-    
-        % Extract overlapping segments
-        ppg_indices = [ppg_start_index, ppg_end_index];
-        imu_indices = [imu_start_index, imu_end_index];
-    end

paradigma/ppg/glob_functions/jsonlab/AUTHORS.txt

@@ -1,41 +0,0 @@
-The author of "jsonlab" toolbox is Qianqian Fang. Qianqian
-is currently an Assistant Professor at Massachusetts General Hospital, 
-Harvard Medical School.
-
-Address: Martinos Center for Biomedical Imaging, 
-         Massachusetts General Hospital, 
-         Harvard Medical School
-         Bldg 149, 13th St, Charlestown, MA 02129, USA
-URL: http://nmr.mgh.harvard.edu/~fangq/
-Email: <fangq at nmr.mgh.harvard.edu> or <fangqq at gmail.com>
-
-
-The script loadjson.m was built upon previous works by
-
-- Nedialko Krouchev: http://www.mathworks.com/matlabcentral/fileexchange/25713
-       date: 2009/11/02
-- François Glineur: http://www.mathworks.com/matlabcentral/fileexchange/23393
-       date: 2009/03/22
-- Joel Feenstra: http://www.mathworks.com/matlabcentral/fileexchange/20565
-       date: 2008/07/03
-
-
-This toolbox contains patches submitted by the following contributors:
-
-- Blake Johnson <bjohnso at bbn.com>
-  part of revision 341
-
-- Niclas Borlin <Niclas.Borlin at cs.umu.se>
-  various fixes in revision 394, including
-  - loadjson crashes for all-zero sparse matrix.
-  - loadjson crashes for empty sparse matrix.
-  - Non-zero size of 0-by-N and N-by-0 empty matrices is lost after savejson/loadjson.
-  - loadjson crashes for sparse real column vector.
-  - loadjson crashes for sparse complex column vector.
-  - Data is corrupted by savejson for sparse real row vector.
-  - savejson crashes for sparse complex row vector. 
-
-- Yul Kang <yul.kang.on at gmail.com>
-  patches for svn revision 415.
-  - savejson saves an empty cell array as [] instead of null
-  - loadjson differentiates an empty struct from an empty array

paradigma/ppg/glob_functions/jsonlab/ChangeLog.txt

@@ -1,74 +0,0 @@
-============================================================================
-
-   JSONlab - a toolbox to encode/decode JSON/UBJSON files in MATLAB/Octave
-
-----------------------------------------------------------------------------
-
-JSONlab ChangeLog (key features marked by *):
-
-== JSONlab 1.0 (codename: Optimus - Final), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2015/01/02 polish help info for all major functions, update examples, finalize 1.0
- 2014/12/19 fix a bug to strictly respect NoRowBracket in savejson
-
-== JSONlab 1.0.0-RC2 (codename: Optimus - RC2), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2014/11/22 show progress bar in loadjson ('ShowProgress') 
- 2014/11/17 add Compact option in savejson to output compact JSON format ('Compact')
- 2014/11/17 add FastArrayParser in loadjson to specify fast parser applicable levels
- 2014/09/18 start official github mirror: https://github.com/fangq/jsonlab
-
-== JSONlab 1.0.0-RC1 (codename: Optimus - RC1), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2014/09/17  fix several compatibility issues when running on octave versions 3.2-3.8
- 2014/09/17  support 2D cell and struct arrays in both savejson and saveubjson
- 2014/08/04  escape special characters in a JSON string
- 2014/02/16  fix a bug when saving ubjson files
-
-== JSONlab 0.9.9 (codename: Optimus - beta), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2014/01/22  use binary read and write in saveubjson and loadubjson
-
-== JSONlab 0.9.8-1 (codename: Optimus - alpha update 1), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2013/10/07 better round-trip conservation for empty arrays and structs (patch submitted by Yul Kang)
-
-== JSONlab 0.9.8 (codename: Optimus - alpha), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
- 2013/08/23 *universal Binary JSON (UBJSON) support, including both saveubjson and loadubjson
-
-== JSONlab 0.9.1 (codename: Rodimus, update 1), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
- 2012/12/18 *handling of various empty and sparse matrices (fixes submitted by Niclas Borlin)
-
-== JSONlab 0.9.0 (codename: Rodimus), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2012/06/17 *new format for an invalid leading char, unpacking hex code in savejson
- 2012/06/01  support JSONP in savejson
- 2012/05/25  fix the empty cell bug (reported by Cyril Davin)
- 2012/04/05  savejson can save to a file (suggested by Patrick Rapin)
-
-== JSONlab 0.8.1 (codename: Sentiel, Update 1), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2012/02/28  loadjson quotation mark escape bug, see http://bit.ly/yyk1nS
- 2012/01/25  patch to handle root-less objects, contributed by Blake Johnson
-
-== JSONlab 0.8.0 (codename: Sentiel), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2012/01/13 *speed up loadjson by 20 fold when parsing large data arrays in matlab
- 2012/01/11  remove row bracket if an array has 1 element, suggested by Mykel Kochenderfer
- 2011/12/22 *accept sequence of 'param',value input in savejson and loadjson
- 2011/11/18  fix struct array bug reported by Mykel Kochenderfer
-
-== JSONlab 0.5.1 (codename: Nexus Update 1), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2011/10/21  fix a bug in loadjson, previous code does not use any of the acceleration
- 2011/10/20  loadjson supports JSON collections - concatenated JSON objects
-
-== JSONlab 0.5.0 (codename: Nexus), FangQ <fangq (at) nmr.mgh.harvard.edu> ==
-
- 2011/10/16  package and release jsonlab 0.5.0
- 2011/10/15 *add json demo and regression test, support cpx numbers, fix double quote bug
- 2011/10/11 *speed up readjson dramatically, interpret _Array* tags, show data in root level
- 2011/10/10  create jsonlab project, start jsonlab website, add online documentation
- 2011/10/07 *speed up savejson by 25x using sprintf instead of mat2str, add options support
- 2011/10/06 *savejson works for structs, cells and arrays
- 2011/09/09  derive loadjson from JSON parser from MATLAB Central, draft savejson.m

paradigma/ppg/glob_functions/jsonlab/LICENSE_BSD.txt

@@ -1,25 +0,0 @@
-Copyright 2011-2015 Qianqian Fang <fangq at nmr.mgh.harvard.edu>. All rights reserved.
-
-Redistribution and use in source and binary forms, with or without modification, are
-permitted provided that the following conditions are met:
-
-   1. Redistributions of source code must retain the above copyright notice, this list of
-      conditions and the following disclaimer.
-
-   2. Redistributions in binary form must reproduce the above copyright notice, this list
-      of conditions and the following disclaimer in the documentation and/or other materials
-      provided with the distribution.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS ''AS IS'' AND ANY EXPRESS OR IMPLIED
-WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND
-FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS 
-OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
-CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
-ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
-NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-The views and conclusions contained in the software and documentation are those of the
-authors and should not be interpreted as representing official policies, either expressed
-or implied, of the copyright holders.