panda-server-source 0.8.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- panda_server_source-0.8.0.dist-info/METADATA +55 -0
- panda_server_source-0.8.0.dist-info/RECORD +375 -0
- panda_server_source-0.8.0.dist-info/WHEEL +4 -0
- panda_server_source-0.8.0.dist-info/licenses/LICENSE.txt +202 -0
- pandajedi/__init__.py +0 -0
- pandajedi/jedibrokerage/AtlasAnalJobBroker.py +2343 -0
- pandajedi/jedibrokerage/AtlasBrokerUtils.py +1292 -0
- pandajedi/jedibrokerage/AtlasProdJobBroker.py +2064 -0
- pandajedi/jedibrokerage/AtlasProdTaskBroker.py +629 -0
- pandajedi/jedibrokerage/GenJobBroker.py +381 -0
- pandajedi/jedibrokerage/JobBrokerBase.py +133 -0
- pandajedi/jedibrokerage/TaskBrokerBase.py +15 -0
- pandajedi/jedibrokerage/__init__.py +0 -0
- pandajedi/jediconfig/__init__.py +0 -0
- pandajedi/jediconfig/jedi_config.py +40 -0
- pandajedi/jedicore/FactoryBase.py +182 -0
- pandajedi/jedicore/Interaction.py +433 -0
- pandajedi/jedicore/JediDBProxy.py +56 -0
- pandajedi/jedicore/JediDBProxyPool.py +37 -0
- pandajedi/jedicore/JediDBSchemaInfo.py +17 -0
- pandajedi/jedicore/JediException.py +13 -0
- pandajedi/jedicore/JediTaskBuffer.py +984 -0
- pandajedi/jedicore/JediTaskBufferInterface.py +50 -0
- pandajedi/jedicore/MsgWrapper.py +124 -0
- pandajedi/jedicore/ProcessUtils.py +34 -0
- pandajedi/jedicore/SiteCandidate.py +90 -0
- pandajedi/jedicore/ThreadUtils.py +205 -0
- pandajedi/jedicore/__init__.py +0 -0
- pandajedi/jediddm/AtlasDDMClient.py +1708 -0
- pandajedi/jediddm/DDMClientBase.py +16 -0
- pandajedi/jediddm/DDMInterface.py +83 -0
- pandajedi/jediddm/GenDDMClient.py +17 -0
- pandajedi/jediddm/__init__.py +0 -0
- pandajedi/jedidog/AtlasAnalWatchDog.py +648 -0
- pandajedi/jedidog/AtlasDataCarouselWatchDog.py +189 -0
- pandajedi/jedidog/AtlasDataLocalityUpdaterWatchDog.py +215 -0
- pandajedi/jedidog/AtlasProdWatchDog.py +443 -0
- pandajedi/jedidog/AtlasQueueFillerWatchDog.py +800 -0
- pandajedi/jedidog/AtlasTaskWithholderWatchDog.py +245 -0
- pandajedi/jedidog/AtlasWorkflowManagerWatchDog.py +63 -0
- pandajedi/jedidog/GenWatchDog.py +21 -0
- pandajedi/jedidog/JumboWatchDog.py +147 -0
- pandajedi/jedidog/TypicalWatchDogBase.py +122 -0
- pandajedi/jedidog/WatchDogBase.py +53 -0
- pandajedi/jedidog/__init__.py +0 -0
- pandajedi/jediexec/reniceJEDI.py +25 -0
- pandajedi/jedigen/AtlasTaskGenerator.py +110 -0
- pandajedi/jedigen/TaskGeneratorBase.py +15 -0
- pandajedi/jedigen/__init__.py +0 -0
- pandajedi/jedimsgprocessor/__init__.py +0 -0
- pandajedi/jedimsgprocessor/ai_parameter_adjuster_msg_processor +71 -0
- pandajedi/jedimsgprocessor/atlas_idds_msg_processor.py +66 -0
- pandajedi/jedimsgprocessor/base_msg_processor.py +33 -0
- pandajedi/jedimsgprocessor/forwarding_msg_processor.py +29 -0
- pandajedi/jedimsgprocessor/hpo_msg_processor.py +93 -0
- pandajedi/jedimsgprocessor/jedi_contents_feeder_msg_processor.py +63 -0
- pandajedi/jedimsgprocessor/jedi_job_generator_msg_processor.py +185 -0
- pandajedi/jedimsgprocessor/jedi_post_processor_msg_processor.py +82 -0
- pandajedi/jedimsgprocessor/kafka_msg_processor.py +44 -0
- pandajedi/jedimsgprocessor/panda_callback_msg_processor.py +182 -0
- pandajedi/jedimsgprocessor/panda_to_jedi_msg_processor.py +74 -0
- pandajedi/jedimsgprocessor/processing_msg_processor.py +134 -0
- pandajedi/jedimsgprocessor/status_report_msg_processor.py +129 -0
- pandajedi/jedimsgprocessor/tape_carousel_msg_processor.py +118 -0
- pandajedi/jedimsgprocessor/workflow_manager_msg_processor.py +89 -0
- pandajedi/jediorder/ContentsFeeder.py +785 -0
- pandajedi/jediorder/JediDaemon.py +27 -0
- pandajedi/jediorder/JediKnight.py +55 -0
- pandajedi/jediorder/JediMaster.py +238 -0
- pandajedi/jediorder/JediMsgProcessor.py +32 -0
- pandajedi/jediorder/JobBroker.py +33 -0
- pandajedi/jediorder/JobGenerator.py +2763 -0
- pandajedi/jediorder/JobSplitter.py +308 -0
- pandajedi/jediorder/JobThrottler.py +28 -0
- pandajedi/jediorder/PostProcessor.py +166 -0
- pandajedi/jediorder/TaskBroker.py +268 -0
- pandajedi/jediorder/TaskCommando.py +334 -0
- pandajedi/jediorder/TaskGenerator.py +17 -0
- pandajedi/jediorder/TaskRefiner.py +611 -0
- pandajedi/jediorder/TaskSetupper.py +17 -0
- pandajedi/jediorder/WatchDog.py +79 -0
- pandajedi/jediorder/__init__.py +0 -0
- pandajedi/jedipprocess/AtlasAnalPostProcessor.py +404 -0
- pandajedi/jedipprocess/AtlasPostProcessorUtils.py +50 -0
- pandajedi/jedipprocess/AtlasProdPostProcessor.py +178 -0
- pandajedi/jedipprocess/GenPostProcessor.py +35 -0
- pandajedi/jedipprocess/MailTemplates.py +185 -0
- pandajedi/jedipprocess/PostProcessorBase.py +269 -0
- pandajedi/jedipprocess/__init__.py +0 -0
- pandajedi/jedirefine/AtlasAnalTaskRefiner.py +259 -0
- pandajedi/jedirefine/AtlasProdTaskRefiner.py +162 -0
- pandajedi/jedirefine/GenTaskRefiner.py +61 -0
- pandajedi/jedirefine/RefinerUtils.py +154 -0
- pandajedi/jedirefine/TaskRefinerBase.py +996 -0
- pandajedi/jedirefine/__init__.py +0 -0
- pandajedi/jedisetup/AtlasTaskSetupper.py +309 -0
- pandajedi/jedisetup/GenTaskSetupper.py +16 -0
- pandajedi/jedisetup/SimpleTaskSetupper.py +152 -0
- pandajedi/jedisetup/TaskSetupperBase.py +15 -0
- pandajedi/jedisetup/__init__.py +0 -0
- pandajedi/jeditest/SchemaChecker.py +41 -0
- pandajedi/jeditest/addContWoSoTask.py +54 -0
- pandajedi/jeditest/addDataCarouselRequest.py +47 -0
- pandajedi/jeditest/addEventServiceTask.py +101 -0
- pandajedi/jeditest/addHpoTask.py +81 -0
- pandajedi/jeditest/addIDDSStageInRequest.py +56 -0
- pandajedi/jeditest/addNonAtlasTask.py +71 -0
- pandajedi/jeditest/addNonAtlasTaskEnc.py +64 -0
- pandajedi/jeditest/addTestTask.py +124 -0
- pandajedi/jeditest/addTestTaskParamToDEFT.py +70 -0
- pandajedi/jeditest/addTestTaskWithMerger.py +97 -0
- pandajedi/jeditest/brokerTest.py +78 -0
- pandajedi/jeditest/cancelDataCarouselRequest.py +35 -0
- pandajedi/jeditest/contentsFeederTest.py +28 -0
- pandajedi/jeditest/contentsFeederTestWithTask.py +18 -0
- pandajedi/jeditest/ddmTest.py +4 -0
- pandajedi/jeditest/jobGenForOneTask.py +38 -0
- pandajedi/jeditest/jobGeneratorTest.py +43 -0
- pandajedi/jeditest/jobSplitterTest.py +104 -0
- pandajedi/jeditest/jobThrottlerTest.py +22 -0
- pandajedi/jeditest/msgProcessorTest.py +9 -0
- pandajedi/jeditest/postProcessorTest.py +18 -0
- pandajedi/jeditest/resubmitDataCarouselRequest.py +35 -0
- pandajedi/jeditest/resubmitTaskParam.py +20 -0
- pandajedi/jeditest/taskBrokerTest.py +22 -0
- pandajedi/jeditest/taskBrokerTestWithTask.py +38 -0
- pandajedi/jeditest/taskBufferTest.py +5 -0
- pandajedi/jeditest/taskCommandoTest.py +28 -0
- pandajedi/jeditest/taskRefinerTest.py +30 -0
- pandajedi/jeditest/testOneTaskToRefine.py +49 -0
- pandajedi/jeditest/testOneTaskToTaskBroker.py +42 -0
- pandajedi/jeditest/testPandaDDMMap.py +62 -0
- pandajedi/jeditest/updateDataCarouselRequestParams.py +50 -0
- pandajedi/jeditest/watchDogTest.py +25 -0
- pandajedi/jeditest/workQueueTest.py +22 -0
- pandajedi/jedithrottle/AtlasAnalJobThrottler.py +19 -0
- pandajedi/jedithrottle/AtlasProdJobThrottler.py +18 -0
- pandajedi/jedithrottle/GenJobThrottler.py +26 -0
- pandajedi/jedithrottle/JobThrottlerBase.py +496 -0
- pandajedi/jedithrottle/__init__.py +0 -0
- pandaserver/__init__.py +0 -0
- pandaserver/api/__init__.py +0 -0
- pandaserver/api/v1/__init__.py +0 -0
- pandaserver/api/v1/common.py +339 -0
- pandaserver/api/v1/credential_management_api.py +372 -0
- pandaserver/api/v1/data_carousel_api.py +264 -0
- pandaserver/api/v1/event_api.py +269 -0
- pandaserver/api/v1/file_server_api.py +942 -0
- pandaserver/api/v1/harvester_api.py +445 -0
- pandaserver/api/v1/http_client.py +166 -0
- pandaserver/api/v1/idds_api.py +180 -0
- pandaserver/api/v1/job_api.py +463 -0
- pandaserver/api/v1/metaconfig_api.py +122 -0
- pandaserver/api/v1/pilot_api.py +895 -0
- pandaserver/api/v1/statistics_api.py +207 -0
- pandaserver/api/v1/system_api.py +186 -0
- pandaserver/api/v1/task_api.py +1520 -0
- pandaserver/api/v1/tests/__init__.py +0 -0
- pandaserver/api/v1/tests/credential_management_api_tests.py +116 -0
- pandaserver/api/v1/tests/data_carousel_api_tests.py +82 -0
- pandaserver/api/v1/tests/harvester_api_tests.py +188 -0
- pandaserver/api/v1/tests/idds_api_tests.py +45 -0
- pandaserver/api/v1/tests/job_api_tests.py +112 -0
- pandaserver/api/v1/tests/pilot_api_tests.py +154 -0
- pandaserver/api/v1/tests/statistics_api_tests.py +104 -0
- pandaserver/api/v1/tests/system_api_tests.py +58 -0
- pandaserver/api/v1/tests/task_api_tests.py +590 -0
- pandaserver/api/v1/version.py +2 -0
- pandaserver/api/v1/workflow_api.py +136 -0
- pandaserver/brokerage/SiteMapper.py +406 -0
- pandaserver/brokerage/__init__.py +0 -0
- pandaserver/brokerage/broker.py +272 -0
- pandaserver/config/__init__.py +0 -0
- pandaserver/config/config_utils.py +15 -0
- pandaserver/config/daemon_config.py +29 -0
- pandaserver/config/mcp_config.py +38 -0
- pandaserver/config/panda_config.py +233 -0
- pandaserver/configurator/Carbon.py +65 -0
- pandaserver/configurator/Configurator.py +908 -0
- pandaserver/configurator/__init__.py +0 -0
- pandaserver/configurator/aux.py +73 -0
- pandaserver/daemons/__init__.py +0 -0
- pandaserver/daemons/master.py +110 -0
- pandaserver/daemons/master_systemd.py +79 -0
- pandaserver/daemons/scripts/__init__.py +0 -0
- pandaserver/daemons/scripts/add_main.py +264 -0
- pandaserver/daemons/scripts/add_sub.py +221 -0
- pandaserver/daemons/scripts/cache_pilots.py +47 -0
- pandaserver/daemons/scripts/cache_schedconfig.py +286 -0
- pandaserver/daemons/scripts/carbon.py +50 -0
- pandaserver/daemons/scripts/configurator.py +94 -0
- pandaserver/daemons/scripts/copyArchive.py +1387 -0
- pandaserver/daemons/scripts/datasetManager.py +1154 -0
- pandaserver/daemons/scripts/dummy_test.py +25 -0
- pandaserver/daemons/scripts/evpPD2P.py +144 -0
- pandaserver/daemons/scripts/hs_scrapers.py +264 -0
- pandaserver/daemons/scripts/metric_collector.py +927 -0
- pandaserver/daemons/scripts/panda_activeusers_query.py +80 -0
- pandaserver/daemons/scripts/pilotStreaming.py +109 -0
- pandaserver/daemons/scripts/process_workflow_files_daemon.py +166 -0
- pandaserver/daemons/scripts/recover_lost_files_daemon.py +177 -0
- pandaserver/daemons/scripts/task_evaluator.py +405 -0
- pandaserver/daemons/scripts/tmpwatch.py +70 -0
- pandaserver/daemons/scripts/worker_synchronization.py +97 -0
- pandaserver/daemons/utils.py +753 -0
- pandaserver/dataservice/DataServiceUtils.py +323 -0
- pandaserver/dataservice/ErrorCode.py +25 -0
- pandaserver/dataservice/RecoverLostFilesCore.py +322 -0
- pandaserver/dataservice/__init__.py +0 -0
- pandaserver/dataservice/activator.py +79 -0
- pandaserver/dataservice/adder_atlas_plugin.py +1106 -0
- pandaserver/dataservice/adder_dummy_plugin.py +31 -0
- pandaserver/dataservice/adder_gen.py +954 -0
- pandaserver/dataservice/adder_plugin_base.py +27 -0
- pandaserver/dataservice/adder_result.py +75 -0
- pandaserver/dataservice/adder_simple_plugin.py +160 -0
- pandaserver/dataservice/closer.py +247 -0
- pandaserver/dataservice/closer_atlas_plugin.py +90 -0
- pandaserver/dataservice/ddm.py +1381 -0
- pandaserver/dataservice/ddm_handler.py +95 -0
- pandaserver/dataservice/dyn_data_distributer.py +824 -0
- pandaserver/dataservice/event_lookup_client_ei.py +77 -0
- pandaserver/dataservice/event_picker.py +268 -0
- pandaserver/dataservice/finisher.py +194 -0
- pandaserver/dataservice/setupper.py +225 -0
- pandaserver/dataservice/setupper_atlas_plugin.py +1851 -0
- pandaserver/dataservice/setupper_dummy_plugin.py +47 -0
- pandaserver/dataservice/setupper_plugin_base.py +67 -0
- pandaserver/jobdispatcher/DispatcherUtils.py +35 -0
- pandaserver/jobdispatcher/ErrorCode.py +19 -0
- pandaserver/jobdispatcher/JobDispatcher.py +1625 -0
- pandaserver/jobdispatcher/Protocol.py +443 -0
- pandaserver/jobdispatcher/Watcher.py +186 -0
- pandaserver/jobdispatcher/__init__.py +0 -0
- pandaserver/pandamcp/__init__.py +0 -0
- pandaserver/pandamcp/mcp_main.py +56 -0
- pandaserver/pandamcp/mcp_test_client.py +95 -0
- pandaserver/pandamcp/mcp_utils.py +74 -0
- pandaserver/proxycache/__init__.py +0 -0
- pandaserver/proxycache/panda_proxy_cache.py +240 -0
- pandaserver/proxycache/token_cache.py +141 -0
- pandaserver/server/.gacl +6 -0
- pandaserver/server/panda.py +539 -0
- pandaserver/srvcore/CoreUtils.py +572 -0
- pandaserver/srvcore/MailUtils.py +106 -0
- pandaserver/srvcore/__init__.py +0 -0
- pandaserver/srvcore/allowed_methods.py +100 -0
- pandaserver/srvcore/oidc_utils.py +152 -0
- pandaserver/srvcore/panda_request.py +196 -0
- pandaserver/srvcore/srv_msg_utils.py +42 -0
- pandaserver/taskbuffer/ConBridge.py +513 -0
- pandaserver/taskbuffer/DBProxyPool.py +95 -0
- pandaserver/taskbuffer/DataCarousel.py +3053 -0
- pandaserver/taskbuffer/DatasetSpec.py +137 -0
- pandaserver/taskbuffer/DdmSpec.py +201 -0
- pandaserver/taskbuffer/ErrorCode.py +87 -0
- pandaserver/taskbuffer/EventServiceUtils.py +396 -0
- pandaserver/taskbuffer/FileSpec.py +290 -0
- pandaserver/taskbuffer/GlobalShares.py +244 -0
- pandaserver/taskbuffer/HarvesterMetricsSpec.py +92 -0
- pandaserver/taskbuffer/Initializer.py +82 -0
- pandaserver/taskbuffer/InputChunk.py +1080 -0
- pandaserver/taskbuffer/JediCacheSpec.py +57 -0
- pandaserver/taskbuffer/JediDatasetSpec.py +588 -0
- pandaserver/taskbuffer/JediFileSpec.py +242 -0
- pandaserver/taskbuffer/JediTaskSpec.py +1687 -0
- pandaserver/taskbuffer/JobSpec.py +1006 -0
- pandaserver/taskbuffer/JobUtils.py +232 -0
- pandaserver/taskbuffer/NucleusSpec.py +116 -0
- pandaserver/taskbuffer/OraDBProxy.py +174 -0
- pandaserver/taskbuffer/PanDAMsgProcessor.py +8 -0
- pandaserver/taskbuffer/PandaDBSchemaInfo.py +18 -0
- pandaserver/taskbuffer/ParseJobXML.py +350 -0
- pandaserver/taskbuffer/PickleFileSpec.py +18 -0
- pandaserver/taskbuffer/PickleJobSpec.py +25 -0
- pandaserver/taskbuffer/PrioUtil.py +40 -0
- pandaserver/taskbuffer/ProcessGroups.py +111 -0
- pandaserver/taskbuffer/ResourceSpec.py +175 -0
- pandaserver/taskbuffer/SQLDumper.py +37 -0
- pandaserver/taskbuffer/SQLManager.py +60 -0
- pandaserver/taskbuffer/SiteSpec.py +304 -0
- pandaserver/taskbuffer/SupErrors.py +10 -0
- pandaserver/taskbuffer/TaskBuffer.py +2882 -0
- pandaserver/taskbuffer/TaskBufferInterface.py +163 -0
- pandaserver/taskbuffer/Utils.py +848 -0
- pandaserver/taskbuffer/WorkQueue.py +227 -0
- pandaserver/taskbuffer/WorkQueueMapper.py +203 -0
- pandaserver/taskbuffer/WorkerSpec.py +143 -0
- pandaserver/taskbuffer/WrappedCursor.py +487 -0
- pandaserver/taskbuffer/WrappedPickle.py +88 -0
- pandaserver/taskbuffer/WrappedPostgresConn.py +24 -0
- pandaserver/taskbuffer/__init__.py +0 -0
- pandaserver/taskbuffer/db_proxy_mods/OraDBProxy_structure.png +0 -0
- pandaserver/taskbuffer/db_proxy_mods/__init__.py +7 -0
- pandaserver/taskbuffer/db_proxy_mods/base_module.py +841 -0
- pandaserver/taskbuffer/db_proxy_mods/data_carousel_module.py +772 -0
- pandaserver/taskbuffer/db_proxy_mods/entity_module.py +3804 -0
- pandaserver/taskbuffer/db_proxy_mods/job_complex_module.py +5661 -0
- pandaserver/taskbuffer/db_proxy_mods/job_standalone_module.py +2640 -0
- pandaserver/taskbuffer/db_proxy_mods/metrics_module.py +874 -0
- pandaserver/taskbuffer/db_proxy_mods/misc_standalone_module.py +4272 -0
- pandaserver/taskbuffer/db_proxy_mods/task_complex_module.py +6172 -0
- pandaserver/taskbuffer/db_proxy_mods/task_event_module.py +4953 -0
- pandaserver/taskbuffer/db_proxy_mods/task_standalone_module.py +4999 -0
- pandaserver/taskbuffer/db_proxy_mods/task_utils_module.py +2063 -0
- pandaserver/taskbuffer/db_proxy_mods/worker_module.py +1944 -0
- pandaserver/taskbuffer/db_proxy_mods/workflow_module.py +832 -0
- pandaserver/taskbuffer/retryModule.py +552 -0
- pandaserver/taskbuffer/task_split_rules.py +308 -0
- pandaserver/taskbuffer/workflow_processor.py +249 -0
- pandaserver/taskbuffer/wrapped_oracle_conn.py +18 -0
- pandaserver/test/SchemaChecker.py +40 -0
- pandaserver/test/__init__.py +0 -0
- pandaserver/test/banUser.py +43 -0
- pandaserver/test/boostPrio.py +19 -0
- pandaserver/test/boostUser.py +35 -0
- pandaserver/test/callbackDDM.py +11 -0
- pandaserver/test/daod_on_demand.py +95 -0
- pandaserver/test/finishJob.py +184 -0
- pandaserver/test/finishTaskJEDI.py +11 -0
- pandaserver/test/getJobs.py +53 -0
- pandaserver/test/killJob.py +79 -0
- pandaserver/test/killJobLowPrio.py +99 -0
- pandaserver/test/killJobsInTask.py +56 -0
- pandaserver/test/killTask.py +80 -0
- pandaserver/test/killTaskJEDI.py +11 -0
- pandaserver/test/killUser.py +83 -0
- pandaserver/test/lsst/README.txt +7 -0
- pandaserver/test/lsst/lsstSubmit.py +139 -0
- pandaserver/test/lsst/lsstSubmitMERGEtest.py +141 -0
- pandaserver/test/lsst/lsstSubmitPhosim332.py +53 -0
- pandaserver/test/lsst/prepare-client-tarball-from-bigpanda-server.sh +41 -0
- pandaserver/test/reassignJobs.py +17 -0
- pandaserver/test/reassignSite.py +82 -0
- pandaserver/test/reassignTask.py +117 -0
- pandaserver/test/reassignWaiting.py +39 -0
- pandaserver/test/recoverLostFiles.py +7 -0
- pandaserver/test/reloadInputDS.py +51 -0
- pandaserver/test/sendCommandToJob.py +26 -0
- pandaserver/test/setDebugMode.py +38 -0
- pandaserver/test/setPriority.py +28 -0
- pandaserver/test/testEvgen.py +60 -0
- pandaserver/test/testEvgen17.py +58 -0
- pandaserver/test/testG4sim.py +81 -0
- pandaserver/test/testG4sim17.py +90 -0
- pandaserver/test/testGlobalShares.py +131 -0
- pandaserver/test/testReco.py +103 -0
- pandaserver/test/testSimulReco14.py +98 -0
- pandaserver/test/testSiteMap.py +26 -0
- pandaserver/test/testUpdateWorkerPilotStatus.py +9 -0
- pandaserver/userinterface/Client.py +1686 -0
- pandaserver/userinterface/UserIF.py +1799 -0
- pandaserver/userinterface/__init__.py +0 -0
- pandaserver/workflow/__init__.py +0 -0
- pandaserver/workflow/data_handler_plugins/base_data_handler.py +48 -0
- pandaserver/workflow/data_handler_plugins/ddm_collection_data_handler.py +100 -0
- pandaserver/workflow/data_handler_plugins/panda_task_data_handler.py +140 -0
- pandaserver/workflow/pcwl_test.py +122 -0
- pandaserver/workflow/pcwl_utils.py +384 -0
- pandaserver/workflow/psnakemake_container.json +68 -0
- pandaserver/workflow/psnakemake_task.json +62 -0
- pandaserver/workflow/psnakemake_test.py +60 -0
- pandaserver/workflow/snakeparser/__init__.py +3 -0
- pandaserver/workflow/snakeparser/extensions.py +74 -0
- pandaserver/workflow/snakeparser/log.py +53 -0
- pandaserver/workflow/snakeparser/names.py +3 -0
- pandaserver/workflow/snakeparser/parser.py +332 -0
- pandaserver/workflow/snakeparser/utils.py +29 -0
- pandaserver/workflow/step_handler_plugins/base_step_handler.py +85 -0
- pandaserver/workflow/step_handler_plugins/panda_task_step_handler.py +280 -0
- pandaserver/workflow/workflow_base.py +531 -0
- pandaserver/workflow/workflow_core.py +1974 -0
- pandaserver/workflow/workflow_core_smoketest.py +388 -0
- pandaserver/workflow/workflow_parser.py +222 -0
- pandaserver/workflow/workflow_utils.py +1047 -0
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import sys
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from pandacommon.pandalogger.PandaLogger import PandaLogger
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from pandacommon.pandautils.thread_utils import GenericThread
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from pandaserver.config import panda_config
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from pandaserver.taskbuffer.Initializer import initializer
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from pandaserver.taskbuffer.TaskBuffer import taskBuffer
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# initialize DB using dummy connection
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initializer.init()
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# logger
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_logger = PandaLogger().getLogger("boostUser")
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_logger.debug("================= start ==================")
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# instantiate TB
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requester_id = GenericThread().get_full_id(__name__, sys.modules[__name__].__file__)
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taskBuffer.init(panda_config.dbhost, panda_config.dbpasswd, nDBConnection=1, requester=requester_id)
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user = sys.stdin.read()
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user = user[:-1]
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sql = "UPDATE atlas_panda.%s set currentPriority=:prio where prodUserName=:uname and prodSourceLabel IN (:label1,:label2) and currentPriority<:prio"
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varMap = {}
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varMap[":prio"] = 4000
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varMap[":uname"] = user
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varMap[":label1"] = "user"
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varMap[":label2"] = "panda"
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for table in ("jobsactive4", "jobsdefined4"):
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_logger.debug((sql % table) + str(varMap))
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ret = taskBuffer.querySQLS(sql % table, varMap)
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_logger.debug(f"ret -> {str(ret)}")
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_logger.debug("================= end ==================")
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import sys
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from pandaserver.config import panda_config
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from pandaserver.dataservice.activator import Activator
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from pandaserver.taskbuffer.TaskBuffer import taskBuffer
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taskBuffer.init(panda_config.dbhost, panda_config.dbpasswd, nDBConnection=1)
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d = taskBuffer.queryDatasetWithMap({"name": sys.argv[1]})
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Activator(taskBuffer, d, enforce=True).run()
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import json
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import math
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import re
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import sys
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import uuid
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from pandajedi.jedicore import JediTaskBuffer
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from pandaserver.taskbuffer.Initializer import initializer
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jediTaskID = sys.argv[1]
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initializer.init()
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taskBuffer = JediTaskBuffer.JediTaskBuffer(None)
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proxy = taskBuffer.proxyPool.getProxy()
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s, o = proxy.getClobObj(
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"select JEDI_TASK_PARAMETERS from atlas_deft.t_task where taskid=:task_id",
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{":task_id": jediTaskID},
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)
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taskParamStr = o[0][0]
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t = json.loads(taskParamStr)
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s, o = proxy.querySQLS(
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"select cpuTime,cpuTimeUnit,ioIntensity,ioIntensityUnit,ramCount,ramUnit,outDiskCount,outDiskUnit,workDiskCount,workDiskUnit "
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"FROM atlas_panda.jedi_tasks where jeditaskid=:task_id",
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{":task_id": jediTaskID},
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)
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(
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cpuTime,
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cpuTimeUnit,
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ioIntensity,
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ioIntensityUnit,
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ramCount,
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ramUnit,
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outDiskCount,
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outDiskUnit,
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workDiskCount,
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workDiskUnit,
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) = o[0]
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tname = f"{str(uuid.uuid4())}.{jediTaskID}"
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t.update(
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{
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"taskName": tname,
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"userName": "pandasrv1",
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"prodSourceLabel": "test",
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"taskPriority": 100000,
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"skipScout": True,
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"cpuTime": cpuTime,
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"cpuTimeUnit": cpuTimeUnit,
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"ioIntensity": ioIntensity,
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"ioIntensityUnit": ioIntensityUnit,
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"ramCount": ramCount,
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"ramUnit": ramUnit,
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"outDiskCount": outDiskCount,
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"outDiskUnit": outDiskUnit,
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"workDiskCount": workDiskCount,
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"workDiskUnit": workDiskUnit,
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"t1Weight": -1,
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}
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)
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i = t["log"]
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i["dataset"] = f"panda.{tname}.log"
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i["value"] = re.sub(r".{}.".format(jediTaskID), r".{}.".format(tname), i["value"])
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if "toStaging" in t:
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del t["toStaging"]
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if "inputPreStaging" in t:
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del t["inputPreStaging"]
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if "nGBPerJob" in t:
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t["nGBPerJob"] = math.ceil(t["nGBPerJob"] / 2)
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newJ = []
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for i in t["jobParameters"]:
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if "dataset" in i:
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if i["param_type"] == "output":
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i["dataset"] = f"panda.{tname}.{i['dataset'].split('.')[4]}"
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i["value"] = re.sub(r".{}.".format(jediTaskID), r".{}.".format(tname), i["value"])
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elif i["type"] == "template":
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i["value"] = re.sub(r" {}.".format(jediTaskID), r" {}.".format(tname), i["value"])
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k = sorted(t.keys())
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for kk in k:
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print(kk, t[kk])
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jonStr = json.dumps(t)
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print(proxy.insertTaskParams_JEDI(t["vo"], t["prodSourceLabel"], t["userName"], t["taskName"], jonStr))
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import hashlib
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import json
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import os
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import re
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import sys
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import uuid
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from http.client import HTTPSConnection
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from urllib.parse import urlencode
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from pandacommon.pandautils.thread_utils import GenericThread
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from pandaserver.brokerage.SiteMapper import SiteMapper
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from pandaserver.config import panda_config
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from pandaserver.dataservice import DataServiceUtils
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from pandaserver.dataservice.DataServiceUtils import select_scope
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from pandaserver.taskbuffer.TaskBuffer import taskBuffer
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from pandaserver.userinterface.Client import baseURLSSL
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# instantiate TB
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requester_id = GenericThread().get_full_id(__name__, sys.modules[__name__].__file__)
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taskBuffer.init(panda_config.dbhost, panda_config.dbpasswd, nDBConnection=1, requester=requester_id)
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# instantiate sitemapper
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siteMapper = SiteMapper(taskBuffer)
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id = sys.argv[1]
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job = taskBuffer.peekJobs([id])[0]
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if job is None:
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print("got None")
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sys.exit(0)
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xml = """<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
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<!-- ATLAS file meta-data catalog -->
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<!DOCTYPE POOLFILECATALOG SYSTEM "InMemory">
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<POOLFILECATALOG>
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"""
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try:
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att = sys.argv[2]
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except Exception:
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att = job.attemptNr
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if job.computingSite in ["", None, "NULL"]:
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print("computingSite is not yet defined")
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sys.exit(0)
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siteSpec = siteMapper.getSite(job.computingSite)
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scope_input, scope_output = select_scope(siteSpec, job.prodSourceLabel, job.job_label)
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with open("/cvmfs/atlas.cern.ch/repo/sw/local/etc/cric_ddmendpoints.json") as f:
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rseDict = json.load(f)
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hash = hashlib.md5()
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iOut = 0
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outFileName = []
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fileDict = {}
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for tmpFile in job.Files:
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if tmpFile.type in ["output"]:
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if False: # outFileName is None:
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outFileName.append(tmpFile.lfn)
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if tmpFile.type in ["output", "log"]:
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fileList = []
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if False: # tmpFile.type == 'output':# and iOut > 0:
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for i in range(8):
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newFile = copy.copy(tmpFile)
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newFile.lfn += f"._00{i}"
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fileList.append(newFile)
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# continue
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else:
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fileList.append(tmpFile)
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iOut += 1
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for file in fileList:
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file.GUID = str(uuid.uuid4())
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if DataServiceUtils.getDistributedDestination(file.destinationDBlockToken) is not None:
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tmpSrcDDM = DataServiceUtils.getDistributedDestination(file.destinationDBlockToken)
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elif job.computingSite == file.destinationSE and file.destinationDBlockToken in siteSpec.setokens_output[scope_output]:
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tmpSrcDDM = siteSpec.setokens_output[scope_output][file.destinationDBlockToken]
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elif file.lfn in outFileName:
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tmpSrcDDM = DataServiceUtils.getDestinationSE(file.destinationDBlockToken)
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if tmpSrcDDM is None:
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tmpSrcSite = siteMapper.getSite(file.destinationSE)
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tmp_scope_input, tmp_scope_output = select_scope(siteSpec, job.prodSourceLabel, job.job_label)
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tmpSrcDDM = tmpSrcSite.ddm_output[tmp_scope_output]
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else:
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tmpSrcSite = siteMapper.getSite(job.computingSite)
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tmp_scope_input, tmp_scope_output = select_scope(siteSpec, job.prodSourceLabel, job.job_label)
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tmpSrcDDM = tmpSrcSite.ddm_output[tmp_scope_output]
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srm, dummy, root = rseDict[tmpSrcDDM]["aprotocols"]["w"][0]
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srm = re.sub("^token:[^:]+:", "", srm)
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srm += root
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srm = re.sub("/$", "", srm)
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hash = hashlib.md5()
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sl = f"{file.scope}:{file.lfn}"
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hash.update(sl.encode())
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hash_hex = hash.hexdigest()
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correctedscope = "/".join(file.scope.split("."))
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path = f"{correctedscope}/{hash_hex[0:2]}/{hash_hex[2:4]}/{file.lfn}"
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strDDM = ""
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if tmpFile.type == "log":
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strDDM += f"<endpoint>{tmpSrcDDM}</endpoint>"
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strDDM += "<endpoint>CERN-PROD_LOGS</endpoint>"
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xml += f"""
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<File ID="{file.GUID}">
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<logical>
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<lfn name="{file.lfn}"/>
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</logical>
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{strDDM}
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<metadata att_name="surl" att_value="{srm}/{path}"/>
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<metadata att_name="fsize" att_value="1273400000"/>
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<metadata att_name="adler32" att_value="0d2a9dc9"/>
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</File>"""
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fileDict[file.lfn] = {
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"guid": file.GUID,
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"fsize": 1234,
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"adler32": "0d2a9dc9",
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"surl": f"{srm}/{path}",
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}
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xml += """
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</POOLFILECATALOG>
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"""
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xml = json.dumps(fileDict)
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meta = """<?xml version="1.0" encoding="UTF-8" standalone="no" ?> <!-- ATLAS file meta-data catalog --> <!DOCTYPE POOLFILECATALOG SYSTEM "InMemory"> <POOLFILECATALOG> <META type="string" name="size" value="82484969"/> <META type="string" name="conditionsTag" value="COMCOND-BLKPA-006-11"/> <META type="string" name="beamType" value="collisions"/> <META type="string" name="fileType" value="aod"/> <META type="string" name="autoConfiguration" value="['everything']"/> <META type="string" name="dataset" value=""/> <META type="string" name="maxEvents" value="200"/> <META type="string" name="AMITag" value="r5475"/> <META type="string" name="postInclude" value="['EventOverlayJobTransforms/Rt_override_BLKPA-006-11.py', 'EventOverlayJobTransforms/muAlign_reco.py']"/> <META type="string" name="preExec" value="['from CaloRec.CaloCellFlags import jobproperties;jobproperties.CaloCellFlags.doLArHVCorr.set_Value_and_Lock(False);muonRecFlags.writeSDOs=True', 'TriggerFlags.AODEDMSet=AODSLIM;rec.Commissioning.set_Value_and_Lock(True);jobproperties.Beam.numberOfCollisions.set_Value_and_Lock(20.0)']"/> <META type="string" name="triggerConfig" value="MCRECO:DBF:TRIGGERDBMC:325,142,266"/> <META type="string" name="preInclude" value="['EventOverlayJobTransforms/UseOracle.py', 'EventOverlayJobTransforms/custom.py', 'EventOverlayJobTransforms/recotrfpre.py']"/> <META type="string" name="geometryVersion" value="ATLAS-GEO-20-00-01"/> <META type="string" name="events"/> <META type="string" name="postExec" value="['from IOVDbSvc.CondDB import conddb"/> """
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|
+
meta = """{ "argValues": { "AMITag": "p1815", "athenaopts": [ "--preloadlib=/cvmfs/atlas.cern.ch/repo/sw/software/x86_64-slc6-gcc47-opt/19.1.4/sw/IntelSoftware/linux/x86_64/xe2013/composer_xe_2013.3.163/compiler/lib/intel64/libintlc.so.5:/cvmfs/atlas.cern.ch/repo/sw/software/x86_64-slc6-gcc47-opt/19.1.4/sw/IntelSoftware/linux/x86_64/xe2013/composer_xe_2013.3.163/compiler/lib/intel64/libimf.so" ], "digiSeedOffset1": 8, "digiSeedOffset2": 8, "inputAODFile": [ "AOD.01598144._000008.pool.root.3" ], "jobNumber": 108, "reductionConf": [ "SUSY2" ], "runNumber": 167775 }, "cmdLine": "'/cvmfs/atlas.cern.ch/repo/sw/software/x86_64-slc6-gcc47-opt/19.1.4/AtlasDerivation/19.1.4.4/InstallArea/share/bin/Reco_tf.py' '--inputAODFile=AOD.01598144._000008.pool.root.3' '--AMITag' 'p1815' '--digiSeedOffset1' '8' '--digiSeedOffset2' '8' '--jobNumber' '108' '--outputDAODFile' '04553369._000108.pool.root.1.panda.um' '--reductionConf' 'SUSY2' '--runNumber' '167775'", "created": "2015-01-10T02:51:03", "executor": [ { "asetup": null, "errMsg": "", "exeConfig": { "inputs": [ "AOD" ], "outputs": [ "DAOD_SUSY2" ], "script": "athena.py", "substep": "a2da" }, "logfileReport": { "countSummary": { "CRITICAL": 0, "DEBUG": 1, "ERROR": 0, "FATAL": 0, "IGNORED": 0, "INFO": 6166, "UNKNOWN": 2114, "VERBOSE": 1, "WARNING": 95 }, "details": {} }, "metaData": {}, "name": "AODtoDAOD", "rc": 0, "resource": { "cpuTime": 2478, "wallTime": 2649 }, "statusOK": true, "validation": true } ], "exitAcronym": "OK", "exitCode": 0, "exitMsg": "OK", "exitMsgExtra": "", "files": { "input": [ { "dataset": null, "nentries": 5000, "subFiles": [ { "file_guid": "727E5251-EE36-1F44-8EFB-C8FBA7D9BE52", "name": "AOD.01598144._000008.pool.root.3" } ], "type": "AOD" } ], "output": [ { "argName": "SUSY2", "dataset": null, "subFiles": [ """
|
|
128
|
+
|
|
129
|
+
for file in job.Files:
|
|
130
|
+
if file.type in ["output"]:
|
|
131
|
+
# meta += """{ "AODFixVersion": "", "beam_energy": [ 6500000.0 ], "beam_type": [ "collisions" ], "conditions_tag": "OFLCOND-RUN12-SDR-14", "file_guid": "%s", "file_size": 643794695, "file_type": "pool", "geometry": "ATLAS-R2-2015-01-01-00", "integrity": true, "lumi_block": [ 15 ], "name": "%s", "nentries": 2563, "run_number": [ 222222 ] } ,""" % (file.GUID,file.lfn)
|
|
132
|
+
meta += (
|
|
133
|
+
"""{ "AODFixVersion": "", "beam_energy": [ 6500000.0 ], "beam_type": [ "collisions" ], "conditions_tag": "OFLCOND-RUN12-SDR-14", "file_guid": "%s", "file_size": 643794695, "file_type": "pool", "geometry": "ATLAS-R2-2015-01-01-00", "integrity": true, "lumi_block": [ 15 ], "name": "%s", "run_number": [ 222222 ] } ,"""
|
|
134
|
+
% (file.GUID, file.lfn)
|
|
135
|
+
)
|
|
136
|
+
meta = meta[:-1]
|
|
137
|
+
meta += """], "type": "aod" } ] }, "name": "Reco_tf", "reportVersion": "1.0.0", "resource": { "cpuUnit": "seconds", "externalsCpuTime": 24, "memUnit": "kB", "transformCpuTime": 50, "wallTime": 2782 } }"""
|
|
138
|
+
|
|
139
|
+
node = {}
|
|
140
|
+
node["jobId"] = id
|
|
141
|
+
node["state"] = "finished"
|
|
142
|
+
# node['state']='failed'
|
|
143
|
+
# node['batchID']='aaax'
|
|
144
|
+
node["pilotErrorCode"] = 2
|
|
145
|
+
node["pilotErrorCode"] = 1099
|
|
146
|
+
# node['pilotErrorDiag']='aaaaaaaaaaaaaaaaaaaaaaa'
|
|
147
|
+
# node['metaData']=meta
|
|
148
|
+
node["corruptedFiles"] = "4003029-1800232404-8696089-2-2.zip"
|
|
149
|
+
node["siteName"] = "BNL_ATLAS_test"
|
|
150
|
+
node["attemptNr"] = att
|
|
151
|
+
node["jobMetrics"] = f"aaaaa=2 bbbb=3 alt:{','.join(outFileName)}"
|
|
152
|
+
# node['jobSubStatus']='pilot_killed'
|
|
153
|
+
# node['coreCount']=10
|
|
154
|
+
node["cpuConsumptionTime"] = 12340
|
|
155
|
+
node["maxRSS"] = 1
|
|
156
|
+
node["maxVMEM"] = 2
|
|
157
|
+
node["maxSWAP"] = 3
|
|
158
|
+
node["maxPSS"] = 5 * 1024 * 1024
|
|
159
|
+
node["avgRSS"] = 11
|
|
160
|
+
node["avgVMEM"] = 12
|
|
161
|
+
node["avgSWAP"] = 13
|
|
162
|
+
node["avgPSS"] = 14
|
|
163
|
+
node["rateWCHAR"] = 1400
|
|
164
|
+
|
|
165
|
+
node["xml"] = xml
|
|
166
|
+
url = f"{baseURLSSL}/updateJob"
|
|
167
|
+
|
|
168
|
+
match = re.search("[^:/]+://([^/]+)(/.+)", url)
|
|
169
|
+
host = match.group(1)
|
|
170
|
+
path = match.group(2)
|
|
171
|
+
|
|
172
|
+
if "X509_USER_PROXY" in os.environ:
|
|
173
|
+
certKey = os.environ["X509_USER_PROXY"]
|
|
174
|
+
else:
|
|
175
|
+
certKey = f"/tmp/x509up_u{os.getuid()}"
|
|
176
|
+
|
|
177
|
+
rdata = urlencode(node)
|
|
178
|
+
|
|
179
|
+
conn = HTTPSConnection(host, key_file=certKey, cert_file=certKey)
|
|
180
|
+
conn.request("POST", path, rdata)
|
|
181
|
+
resp = conn.getresponse()
|
|
182
|
+
data = resp.read()
|
|
183
|
+
|
|
184
|
+
print(data)
|
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
import datetime
|
|
2
|
+
import os
|
|
3
|
+
import re
|
|
4
|
+
import socket
|
|
5
|
+
import sys
|
|
6
|
+
import threading
|
|
7
|
+
from http.client import HTTPSConnection
|
|
8
|
+
from urllib.parse import parse_qs, urlencode
|
|
9
|
+
|
|
10
|
+
from pandacommon.pandautils.PandaUtils import naive_utcnow
|
|
11
|
+
|
|
12
|
+
from pandaserver.userinterface.Client import baseURLSSL
|
|
13
|
+
|
|
14
|
+
node = {}
|
|
15
|
+
node["siteName"] = sys.argv[1]
|
|
16
|
+
node["mem"] = 1000
|
|
17
|
+
node["node"] = socket.getfqdn()
|
|
18
|
+
# node['prodSourceLabel']='user'
|
|
19
|
+
url = f"{baseURLSSL}/getJob"
|
|
20
|
+
|
|
21
|
+
match = re.search("[^:/]+://([^/]+)(/.+)", url)
|
|
22
|
+
host = match.group(1)
|
|
23
|
+
path = match.group(2)
|
|
24
|
+
|
|
25
|
+
if "X509_USER_PROXY" in os.environ:
|
|
26
|
+
certKey = os.environ["X509_USER_PROXY"]
|
|
27
|
+
else:
|
|
28
|
+
certKey = f"/tmp/x509up_u{os.getuid()}"
|
|
29
|
+
|
|
30
|
+
rdata = urlencode(node)
|
|
31
|
+
|
|
32
|
+
|
|
33
|
+
class Thr(threading.Thread):
|
|
34
|
+
def __init__(self):
|
|
35
|
+
threading.Thread.__init__(self)
|
|
36
|
+
|
|
37
|
+
def run(self):
|
|
38
|
+
print(naive_utcnow().isoformat(" "))
|
|
39
|
+
conn = HTTPSConnection(host, key_file=certKey, cert_file=certKey)
|
|
40
|
+
conn.request("POST", path, rdata)
|
|
41
|
+
resp = conn.getresponse()
|
|
42
|
+
data = resp.read()
|
|
43
|
+
print(naive_utcnow().isoformat(" "))
|
|
44
|
+
print(parse_qs(data))
|
|
45
|
+
|
|
46
|
+
|
|
47
|
+
nThr = 1
|
|
48
|
+
thrs = []
|
|
49
|
+
for i in range(nThr):
|
|
50
|
+
thrs.append(Thr())
|
|
51
|
+
|
|
52
|
+
for thr in thrs:
|
|
53
|
+
thr.start()
|
|
@@ -0,0 +1,79 @@
|
|
|
1
|
+
import optparse
|
|
2
|
+
import sys
|
|
3
|
+
|
|
4
|
+
from pandaserver.userinterface import Client
|
|
5
|
+
|
|
6
|
+
option_parser = optparse.OptionParser(conflict_handler="resolve")
|
|
7
|
+
option_parser.add_option(
|
|
8
|
+
"-9",
|
|
9
|
+
action="store_const",
|
|
10
|
+
const=True,
|
|
11
|
+
dest="forceKill",
|
|
12
|
+
default=False,
|
|
13
|
+
help="kill jobs before next heartbeat is coming",
|
|
14
|
+
)
|
|
15
|
+
option_parser.add_option("--codeV", action="store", dest="codeV", default=None, help="kill code")
|
|
16
|
+
option_parser.add_option(
|
|
17
|
+
"--jobSubStatus",
|
|
18
|
+
action="store",
|
|
19
|
+
dest="jobSubStatus",
|
|
20
|
+
default=None,
|
|
21
|
+
help="set job sub status if any",
|
|
22
|
+
)
|
|
23
|
+
option_parser.add_option(
|
|
24
|
+
"--killOwnProdJobs",
|
|
25
|
+
action="store_const",
|
|
26
|
+
const=True,
|
|
27
|
+
dest="killOwnProdJobs",
|
|
28
|
+
default=False,
|
|
29
|
+
help="kill own production jobs without a production role",
|
|
30
|
+
)
|
|
31
|
+
option_parser.add_option(
|
|
32
|
+
"--killUserJobs",
|
|
33
|
+
action="store_const",
|
|
34
|
+
const=True,
|
|
35
|
+
dest="killUserJobs",
|
|
36
|
+
default=False,
|
|
37
|
+
help="kill user jobs using a production role",
|
|
38
|
+
)
|
|
39
|
+
option_parser.add_option(
|
|
40
|
+
"--keepUnmerged",
|
|
41
|
+
action="store_const",
|
|
42
|
+
const=True,
|
|
43
|
+
dest="keepUnmerged",
|
|
44
|
+
default=False,
|
|
45
|
+
help="generate a new job after kiliing, to keep unmerged events",
|
|
46
|
+
)
|
|
47
|
+
options, args = option_parser.parse_args()
|
|
48
|
+
|
|
49
|
+
codeV = None
|
|
50
|
+
useMailAsIDV = False
|
|
51
|
+
|
|
52
|
+
if options.forceKill:
|
|
53
|
+
if options.killUserJobs:
|
|
54
|
+
codeV = 99
|
|
55
|
+
else:
|
|
56
|
+
codeV = 9
|
|
57
|
+
elif options.killUserJobs:
|
|
58
|
+
codeV = 91
|
|
59
|
+
else:
|
|
60
|
+
try:
|
|
61
|
+
codeV = int(options.codeV)
|
|
62
|
+
except Exception:
|
|
63
|
+
pass
|
|
64
|
+
if options.killOwnProdJobs:
|
|
65
|
+
useMailAsIDV = True
|
|
66
|
+
|
|
67
|
+
if len(args) == 1:
|
|
68
|
+
job_id = int(args[0])
|
|
69
|
+
ret = Client.kill_jobs([job_id], code=codeV, keep_unmerged=options.keepUnmerged, job_sub_status=options.jobSubStatus)
|
|
70
|
+
else:
|
|
71
|
+
job_id_start = int(args[0])
|
|
72
|
+
job_id_end = int(args[1])
|
|
73
|
+
if job_id_start > job_id_end:
|
|
74
|
+
print(f"{job_id_end} is less than {job_id_start}")
|
|
75
|
+
sys.exit(1)
|
|
76
|
+
|
|
77
|
+
ret = Client.kill_jobs(range(job_id_start, job_id_end + 1), code=codeV, keep_unmerged=options.keepUnmerged, job_sub_status=options.jobSubStatus)
|
|
78
|
+
|
|
79
|
+
print(ret)
|
|
@@ -0,0 +1,99 @@
|
|
|
1
|
+
import optparse
|
|
2
|
+
import time
|
|
3
|
+
|
|
4
|
+
# password
|
|
5
|
+
from pandaserver.config import panda_config
|
|
6
|
+
from pandaserver.taskbuffer.OraDBProxy import DBProxy
|
|
7
|
+
from pandaserver.userinterface import Client
|
|
8
|
+
|
|
9
|
+
usageStr = """%prog [options] <priority>
|
|
10
|
+
|
|
11
|
+
Description: kill jobs with low priorities below a given value"""
|
|
12
|
+
option_parser = optparse.OptionParser(conflict_handler="resolve", usage=usageStr)
|
|
13
|
+
option_parser.add_option(
|
|
14
|
+
"-9",
|
|
15
|
+
action="store_const",
|
|
16
|
+
const=True,
|
|
17
|
+
dest="forceKill",
|
|
18
|
+
default=False,
|
|
19
|
+
help="kill jobs before next heartbeat is coming",
|
|
20
|
+
)
|
|
21
|
+
option_parser.add_option(
|
|
22
|
+
"--running",
|
|
23
|
+
action="store_const",
|
|
24
|
+
const=True,
|
|
25
|
+
dest="killRunning",
|
|
26
|
+
default=False,
|
|
27
|
+
help="kill running jobs to free up CPU slots. jobs will be killed regardless of job status if omitted",
|
|
28
|
+
)
|
|
29
|
+
option_parser.add_option("--site", action="store", dest="site", default=None, help="computingSite")
|
|
30
|
+
option_parser.add_option("--cloud", action="store", dest="cloud", default=None, help="cloud")
|
|
31
|
+
option_parser.add_option(
|
|
32
|
+
"--maxJobs",
|
|
33
|
+
action="store",
|
|
34
|
+
dest="maxJobs",
|
|
35
|
+
default=None,
|
|
36
|
+
help="max number of jobs to be killed",
|
|
37
|
+
)
|
|
38
|
+
options, args = option_parser.parse_args()
|
|
39
|
+
|
|
40
|
+
if options.cloud is None and options.site is None:
|
|
41
|
+
option_parser.error("--site=<computingSite> and/or --cloud=<cloud> is required")
|
|
42
|
+
|
|
43
|
+
proxyS = DBProxy()
|
|
44
|
+
proxyS.connect(panda_config.dbhost, panda_config.dbpasswd, panda_config.dbuser, panda_config.dbname)
|
|
45
|
+
|
|
46
|
+
jobsMap = {}
|
|
47
|
+
|
|
48
|
+
if len(args) == 0:
|
|
49
|
+
option_parser.error("priority is required")
|
|
50
|
+
|
|
51
|
+
varMap = {}
|
|
52
|
+
varMap[":prodSourceLabel"] = "managed"
|
|
53
|
+
varMap[":currentPriority"] = args[0]
|
|
54
|
+
sql = "SELECT PandaID,currentPriority FROM %s WHERE prodSourceLabel=:prodSourceLabel AND currentPriority<:currentPriority "
|
|
55
|
+
if options.killRunning:
|
|
56
|
+
sql += "AND jobStatus=:jobStatus "
|
|
57
|
+
varMap[":jobStatus"] = "running"
|
|
58
|
+
if options.cloud is not None:
|
|
59
|
+
sql += "AND cloud=:cloud "
|
|
60
|
+
varMap[":cloud"] = options.cloud
|
|
61
|
+
if options.site is not None:
|
|
62
|
+
sql += "AND computingSite=:site "
|
|
63
|
+
varMap[":site"] = options.site
|
|
64
|
+
for table in [
|
|
65
|
+
"ATLAS_PANDA.jobsActive4",
|
|
66
|
+
"ATLAS_PANDA.jobsDefined4",
|
|
67
|
+
]:
|
|
68
|
+
status, res = proxyS.querySQLS(sql % table, varMap)
|
|
69
|
+
if res is not None:
|
|
70
|
+
for id, prio in res:
|
|
71
|
+
if prio not in jobsMap:
|
|
72
|
+
jobsMap[prio] = []
|
|
73
|
+
if id not in jobsMap[prio]:
|
|
74
|
+
jobsMap[prio].append(id)
|
|
75
|
+
|
|
76
|
+
# order by PandaID and currentPriority
|
|
77
|
+
jobs = []
|
|
78
|
+
prioList = sorted(jobsMap)
|
|
79
|
+
for prio in prioList:
|
|
80
|
+
# reverse order by PandaID to kill newer jobs
|
|
81
|
+
ids = sorted(jobsMap[prio])
|
|
82
|
+
ids.reverse()
|
|
83
|
+
jobs += ids
|
|
84
|
+
|
|
85
|
+
if options.maxJobs is not None:
|
|
86
|
+
jobs = jobs[: int(options.maxJobs)]
|
|
87
|
+
|
|
88
|
+
print(f"The number of jobs with priorities below {args[0]} : {len(jobs)}")
|
|
89
|
+
if len(jobs):
|
|
90
|
+
nJob = 100
|
|
91
|
+
iJob = 0
|
|
92
|
+
while iJob < len(jobs):
|
|
93
|
+
print(f"kill {str(jobs[iJob:iJob + nJob])}")
|
|
94
|
+
if options.forceKill:
|
|
95
|
+
Client.kill_jobs(jobs[iJob : iJob + nJob], 9)
|
|
96
|
+
else:
|
|
97
|
+
Client.kill_jobs(jobs[iJob : iJob + nJob])
|
|
98
|
+
iJob += nJob
|
|
99
|
+
time.sleep(1)
|
|
@@ -0,0 +1,56 @@
|
|
|
1
|
+
import optparse
|
|
2
|
+
import time
|
|
3
|
+
|
|
4
|
+
# password
|
|
5
|
+
from pandaserver.config import panda_config
|
|
6
|
+
from pandaserver.taskbuffer.OraDBProxy import DBProxy
|
|
7
|
+
from pandaserver.userinterface import Client
|
|
8
|
+
|
|
9
|
+
option_parser = optparse.OptionParser(conflict_handler="resolve")
|
|
10
|
+
option_parser.add_option(
|
|
11
|
+
"-9",
|
|
12
|
+
action="store_const",
|
|
13
|
+
const=True,
|
|
14
|
+
dest="forceKill",
|
|
15
|
+
default=False,
|
|
16
|
+
help="kill jobs before next heartbeat is coming",
|
|
17
|
+
)
|
|
18
|
+
options, args = option_parser.parse_args()
|
|
19
|
+
|
|
20
|
+
useMailAsIDV = False
|
|
21
|
+
if options.killOwnProdJobs:
|
|
22
|
+
useMailAsIDV = True
|
|
23
|
+
|
|
24
|
+
proxyS = DBProxy()
|
|
25
|
+
proxyS.connect(panda_config.dbhost, panda_config.dbpasswd, panda_config.dbuser, panda_config.dbname)
|
|
26
|
+
|
|
27
|
+
jobs = []
|
|
28
|
+
|
|
29
|
+
varMap = {}
|
|
30
|
+
varMap[":prodSourceLabel"] = "managed"
|
|
31
|
+
varMap[":taskID"] = args[0]
|
|
32
|
+
varMap[":pandaIDl"] = args[1]
|
|
33
|
+
varMap[":pandaIDu"] = args[2]
|
|
34
|
+
sql = "SELECT PandaID FROM %s WHERE prodSourceLabel=:prodSourceLabel AND taskID=:taskID AND PandaID BETWEEN :pandaIDl AND :pandaIDu ORDER BY PandaID"
|
|
35
|
+
for table in [
|
|
36
|
+
"ATLAS_PANDA.jobsActive4",
|
|
37
|
+
"ATLAS_PANDA.jobsDefined4",
|
|
38
|
+
]:
|
|
39
|
+
status, res = proxyS.querySQLS(sql % table, varMap)
|
|
40
|
+
if res is not None:
|
|
41
|
+
for (id,) in res:
|
|
42
|
+
if id not in jobs:
|
|
43
|
+
jobs.append(id)
|
|
44
|
+
|
|
45
|
+
print(f"The number of jobs to be killed : {len(jobs)}")
|
|
46
|
+
if len(jobs):
|
|
47
|
+
nJob = 100
|
|
48
|
+
iJob = 0
|
|
49
|
+
while iJob < len(jobs):
|
|
50
|
+
print(f"kill {str(jobs[iJob:iJob + nJob])}")
|
|
51
|
+
if options.forceKill:
|
|
52
|
+
Client.kill_jobs(jobs[iJob : iJob + nJob], 9)
|
|
53
|
+
else:
|
|
54
|
+
Client.kill_jobs(jobs[iJob : iJob + nJob])
|
|
55
|
+
iJob += nJob
|
|
56
|
+
time.sleep(1)
|