oxymetag 1.1.1__py3-none-any.whl → 1.1.2__py3-none-any.whl

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Files changed (8) hide show
  1. oxymetag/__init__.py +1 -1
  2. oxymetag/scripts/predict_oxygen.R +1 -1
  3. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/METADATA +1 -1
  4. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/RECORD +8 -8
  5. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/LICENSE +0 -0
  6. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/WHEEL +0 -0
  7. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/entry_points.txt +0 -0
  8. {oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/top_level.txt +0 -0
oxymetag/__init__.py CHANGED
@@ -2,7 +2,7 @@
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  OxyMetaG: Oxygen metabolism profiling from metagenomic data
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  """
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- __version__ = "1.1.1"
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+ __version__ = "1.1.2"
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  __author__ = "Clifton P. Bueno de Mesquita"
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  __email__ = "cliff.buenodemesquita@colorado.edu"
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oxymetag/scripts/predict_oxygen.R CHANGED
@@ -167,7 +167,7 @@ predict_oxygen <- function(input_dir, output_file, package_data_dir, mode, idcut
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  gene.hit.length.correction <- gene.hits %>%
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  left_join(pfam_gene_length, by = "Pfam") %>%
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- mutate(RPK = total_count / (1000 * Gene.length)) %>%
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+ mutate(RPK = total_count / (Gene.length/1000)) %>%
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  left_join(oxygen_pfams, by = "Pfam")
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  # Sum by oxygen type
{oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: oxymetag
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- Version: 1.1.1
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+ Version: 1.1.2
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  Summary: Oxygen metabolism profiling from metagenomic data
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  Home-page: https://github.com/cliffbueno/oxymetag
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  Author: Clifton P. Bueno de Mesquita
{oxymetag-1.1.1.dist-info → oxymetag-1.1.2.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- oxymetag/__init__.py,sha256=jmwbHrRvxQhdOGacT6-lojPH1Vf5r1BA0KWz2ycl0vk,441
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+ oxymetag/__init__.py,sha256=4ykaOTgOYTMULmR1fxZBubbwbSVoMuE4sqT1r9jYtbI,441
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  oxymetag/cli.py,sha256=GIXCxpBUQIRWgcSyQNudAWyuVWAAnxK1DRGXG8jpVzQ,4877
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  oxymetag/core.py,sha256=zLLVT6XsNb7qFtDlobIh44xgnOzXauYBCL8nNLA4XSk,12496
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  oxymetag/utils.py,sha256=fxzKYNUpsuBnYZxlh8QMIEg5wktV6BatoLasfawTeW8,3178
@@ -19,11 +19,11 @@ oxymetag/data/oxymetag_pfams_n117_db_h.dbtype,sha256=QvSuuBwe-B93Hz3oq8qdz2aQHFd
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  oxymetag/data/oxymetag_pfams_n117_db_h.index,sha256=JQc2q-oSWwx-sv32muf51tZVgmDl0DgM6m1eJr5Z-V4,379408
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  oxymetag/data/pfam_headers_table.txt,sha256=wMg4WvlST6Zi3EzVFudjFHyREqNk8kHDI9Q6th7FdFY,255832
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  oxymetag/data/pfam_lengths.tsv,sha256=--0bGxDN2v_WiBo0rKFJMPeOPsOrbaNhyjPAoIF9E5A,366
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- oxymetag/scripts/predict_oxygen.R,sha256=NUv23y0l7BQxFUoxHqttlKveh6LYmO2qgP8hciGdpMs,7657
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+ oxymetag/scripts/predict_oxygen.R,sha256=uhECt5Vkr2AV4mk6YZ4J1ELLNvNCPVG0YyOI9ukcZYw,7655
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  tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- oxymetag-1.1.1.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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- oxymetag-1.1.1.dist-info/METADATA,sha256=H6M4nnM-SOojWNgRCEJRMcCiS417gi0iIVvAAUlVryY,11898
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- oxymetag-1.1.1.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
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- oxymetag-1.1.1.dist-info/entry_points.txt,sha256=-9xMAfrSPtFBEvQWRNVKROTM_3OjEik34mVEsYFwM2k,47
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- oxymetag-1.1.1.dist-info/top_level.txt,sha256=G7EHL5Fpxne8CH3w5IDIkrsRmMzaEfOhmTngNovoYi8,15
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- oxymetag-1.1.1.dist-info/RECORD,,
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+ oxymetag-1.1.2.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
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+ oxymetag-1.1.2.dist-info/METADATA,sha256=zyl95Ad5RaaMioQzvqlhMftzyyhqfLY84_haSzzVW8Q,11898
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+ oxymetag-1.1.2.dist-info/WHEEL,sha256=iAkIy5fosb7FzIOwONchHf19Qu7_1wCWyFNR5gu9nU0,91
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+ oxymetag-1.1.2.dist-info/entry_points.txt,sha256=-9xMAfrSPtFBEvQWRNVKROTM_3OjEik34mVEsYFwM2k,47
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+ oxymetag-1.1.2.dist-info/top_level.txt,sha256=G7EHL5Fpxne8CH3w5IDIkrsRmMzaEfOhmTngNovoYi8,15
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+ oxymetag-1.1.2.dist-info/RECORD,,