outerloop-science 0.1.0__py3-none-any.whl

outerloop/verify_post_cli.py

@@ -0,0 +1,116 @@
+"""Posting half of the verifier's tokenless split (mirrors review_post_cli).
+
+Reads the verdict envelope the session job emitted (`VERIFY_EMIT_FILE`),
+re-validates it, and posts through the normal verification path. This job holds
+the write token; NO model session runs next to it, so a shell judge in the
+session job has no write credential to lift. The artifact crosses a job
+boundary, so nothing in it is trusted: the envelope must name this PR, the
+bot-only skip rule is re-checked here, and every string passes the same
+sanitizing render as the single-job path. Exits 0 on every failure — the
+verifier never fails the target repo's CI.
+"""
+
+from __future__ import annotations
+
+import json
+import logging
+import os
+import sys
+from pathlib import Path
+
+from outerloop.github import EnvTokenProvider, GitHubClient
+from outerloop.posting import EXPECTED_FAILURES, post_round, post_skip_stub
+from outerloop.review_agent import pull_request
+from outerloop.verifier import (
+    VERIFY_MARKER,
+    format_verify_comment,
+    verify_result_from_data,
+    verify_skip_reason,
+)
+
+log = logging.getLogger(__name__)
+
+
+def post_from_file(
+    client: GitHubClient, repo: str, number: int, bot_login: str, path: Path
+) -> str | None:
+    """Post the emitted verdict (or skip stub). Returns the round label, or
+    None when there was nothing to post or the envelope was refused."""
+    try:
+        envelope = json.loads(path.read_text())
+    except (OSError, json.JSONDecodeError) as exc:
+        log.warning("verdict file unreadable (%s); nothing posted", exc)
+        return None
+    if not isinstance(envelope, dict):
+        log.warning("verdict file is not an object; nothing posted")
+        return None
+    if envelope.get("repo") != repo or envelope.get("number") != number:
+        log.warning("verdict envelope names a different PR; refused")
+        return None
+    kind = envelope.get("kind")
+    if kind == "skip-clean":
+        log.info("session skipped cleanly (%s); nothing to post", envelope.get("detail", ""))
+        return None
+    if kind not in ("skip-stub", "findings"):
+        log.warning("unknown envelope kind %r; nothing posted", kind)
+        return None
+    try:
+        # the write authority re-checks the bot-only rule for EVERY kind: this
+        # side of the artifact boundary is the one that must never post on a
+        # non-bot PR — a forged envelope is still a post
+        pr, pr_data = pull_request(client, repo, number)
+        skip = verify_skip_reason(pr, bot_login)
+        if skip is not None:
+            log.info("skipping post on %s#%s: %s", repo, number, skip)
+            return None
+        if kind == "skip-stub":
+            post_skip_stub(client, repo, number, "verification", RuntimeError("no verdict"))
+            return "skip-stub"
+        data = envelope.get("data")
+        result = verify_result_from_data(data if isinstance(data, dict) else {})
+        body = format_verify_comment(result)
+        if body is None:
+            log.info("nothing to post")
+            return None
+        round_label = post_round(
+            client,
+            repo,
+            number,
+            VERIFY_MARKER,
+            body,
+            pr_data,
+            reviewed_by=str(envelope.get("reviewed_by", "")),
+        )
+        log.info("posted verification (%s) on %s#%s", round_label, repo, number)
+        return round_label
+    except EXPECTED_FAILURES as exc:  # advisory: never fail the target repo's CI
+        log.warning("posting did not complete: %s: %s", type(exc).__name__, exc)
+        return None
+
+
+def main() -> int:
+    logging.basicConfig(level=logging.INFO, format="%(message)s")
+    repo = os.environ.get("PR_REPO", "").strip()
+    number_raw = os.environ.get("PR_NUMBER", "").strip()
+    if not repo or not number_raw.isdigit():
+        log.warning("PR_REPO/PR_NUMBER unset or invalid; skipping")
+        return 0
+    bot_login = os.environ.get("REVIEW_BOT_LOGIN", "").strip()
+    if not bot_login:
+        log.warning("REVIEW_BOT_LOGIN is unset; skipping (cannot re-check the bot rule)")
+        return 0
+    emit_file = os.environ.get("VERIFY_EMIT_FILE", "").strip()
+    if not emit_file:
+        log.warning("VERIFY_EMIT_FILE is unset; skipping")
+        return 0
+    path = Path(emit_file).resolve()
+    if not path.is_file():
+        log.info("no verdict file at %s (clean skip upstream); nothing to post", path)
+        return 0
+    client = GitHubClient(auth=EnvTokenProvider("GITHUB_TOKEN"))
+    post_from_file(client, repo, int(number_raw), bot_login, path)
+    return 0
+
+
+if __name__ == "__main__":
+    sys.exit(main())

outerloop/watcher.py

@@ -0,0 +1,203 @@
+"""The session watcher: a thread beside a live author session that answers its
+questions through the syscall channel in seconds — `queue` (the kernel's jobs
+in the cluster queue, every agent's) and `history` (this run's launches) —
+where the tick would take a cadence. It changes no lifecycle state: it writes
+answer files into the channel and nothing else; submitting, cancelling,
+sealing and parking stay at the sleep boundary (docs/design/session-watcher.md).
+
+Failure never reaches the session: an exception is logged and the request is
+left standing, the tool times out and says so. A watcher that dies leaves the
+session exactly as it is without one."""
+
+from __future__ import annotations
+
+import logging
+import re
+import threading
+import time
+from collections.abc import Callable
+from dataclasses import dataclass, field
+from pathlib import Path
+from typing import Any
+
+from outerloop.climbboard import queue_rows
+from outerloop.launchlog import history, why_by_job
+from outerloop.runstate import run_dir
+from outerloop.syscall import MAX_WHY_CHARS, mark_done, marker_requested, write_channel_json
+
+log = logging.getLogger(__name__)
+
+VERBS = ("queue", "history")
+POLL_S = 2.0
+# one scheduler query per this many seconds however often the marker is
+# rewritten: a session cannot turn the watcher into a squeue loop
+QUERY_GAP_S = 5.0
+MAX_QUEUE_ROWS = 500
+# squeue names a pending array `<id>_[0-15%4]` and a running task `<id>_3`
+_ARRAY_THROTTLE = re.compile(r"_\[[^\]]*%(\d+)\]$")
+# the lane's node states move slowly; one sinfo a minute is plenty
+LANE_GAP_S = 60.0
+# a stopped watcher may still be inside a scheduler query (its own timeout,
+# a minute at most); the attempt waits this long for it, then moves on — the
+# thread is a daemon and writes nothing once stopped
+JOIN_S = 15.0
+
+
+@dataclass
+class WatcherContext:
+    """What the watcher needs to answer: where the channel is, which run it
+    serves, and the compute backend to ask (None = no queue, local mode)."""
+
+    workspace: Path
+    run_root: Path
+    run_id: str
+    target: str
+    agent_id: str
+    compute: Any = None
+    gpu_partition: str = ""
+    poll_s: float = POLL_S
+    query_gap_s: float = QUERY_GAP_S
+    lane_gap_s: float = LANE_GAP_S
+    clock: Callable[[], float] = field(default=time.time)
+
+
+def _kind(name: str) -> str:
+    """A short label for a kernel job that is not a launch."""
+    for key in ("wake", "followup", "eval", "resident", "tick"):
+        if key in name:
+            return key
+    return name
+
+
+class SessionWatcher:
+    """`with SessionWatcher(ctx):` around the harness subprocess. `service()`
+    is one pass, public so the loop is testable without the thread."""
+
+    def __init__(self, ctx: WatcherContext) -> None:
+        self.ctx = ctx
+        self._stop = threading.Event()
+        self._thread: threading.Thread | None = None
+        self._queue_cache: dict[str, Any] | None = None
+        self._queue_at = 0.0
+        self._lane_cache: dict[str, Any] | None = None
+        self._lane_at = 0.0
+
+    def __enter__(self) -> SessionWatcher:
+        self._thread = threading.Thread(target=self._loop, name="session-watcher", daemon=True)
+        self._thread.start()
+        return self
+
+    def __exit__(self, *exc: object) -> None:
+        self._stop.set()
+        if self._thread is not None:
+            self._thread.join(timeout=JOIN_S)
+            if self._thread.is_alive():
+                log.warning("session watcher still inside a scheduler query at session end")
+
+    def _loop(self) -> None:
+        # wait() is False on timeout: poll; True once stopped
+        while not self._stop.wait(self.ctx.poll_s):
+            self.service()
+
+    def service(self) -> None:
+        """Answer every verb whose request marker is newer than its done marker."""
+        for verb in VERBS:
+            if self._stop.is_set():
+                return
+            try:
+                requested = marker_requested(self.ctx.workspace, f"{verb}-request", f"{verb}-done")
+                if requested is None:
+                    continue
+                payload = self.queue_view() if verb == "queue" else self.history_view()
+                if self._stop.is_set():
+                    return  # the session ended meanwhile: nothing is written after it
+                write_channel_json(self.ctx.workspace, f"{verb}.json", payload)
+                mark_done(self.ctx.workspace, f"{verb}-done", requested)
+            except Exception as exc:  # the request stands; the tool times out
+                log.warning("session watcher: %s failed: %s", verb, exc)
+
+    def history_view(self) -> dict[str, Any]:
+        ctx = self.ctx
+        return {
+            "at": ctx.clock(),
+            "run_id": ctx.run_id,
+            "history": history(run_dir(ctx.run_root, ctx.run_id)),
+        }
+
+    def queue_view(self) -> dict[str, Any]:
+        """The kernel's jobs as the board projects them (attributed to agents),
+        each launch labelled with its author's `why`, plus the GPU lane's load.
+        Cached for `query_gap_s` — the rate limit on scheduler queries."""
+        ctx = self.ctx
+        now = ctx.clock()
+        if self._queue_cache is not None and now - self._queue_at < ctx.query_gap_s:
+            return {**self._queue_cache, "at": now, "cached": True}
+        error = ""
+        rows: list[dict[str, Any]] = []
+        try:
+            snapshot = ctx.compute.queue_snapshot() if ctx.compute is not None else []
+            rows = [
+                dict(r) for r in queue_rows(ctx.run_root, ctx.target, snapshot)[:MAX_QUEUE_ROWS]
+            ]
+        except Exception as exc:
+            error = str(exc)[:200]
+        labels: dict[str, dict[str, Any]] = {}
+        for rid in {str(r.get("run_id") or "") for r in rows} - {""}:
+            labels.update(why_by_job(run_dir(ctx.run_root, rid)))
+        for r in rows:
+            rid = str(r.get("run_id") or "")
+            name = str(r.get("name") or "")
+            prefix = f"{rid}-launch-" if rid else ""
+            r["mine"] = bool(rid) and rid == ctx.run_id
+            job_id = str(r.get("id") or "")
+            throttle = _ARRAY_THROTTLE.search(job_id)
+            if throttle:
+                r["concurrency"] = int(throttle.group(1))
+            if prefix and name.startswith(prefix):
+                r["experiment"] = name[len(prefix) :]
+                # the ledger keys the array's id; squeue shows `<id>_<k>` or `<id>_[...]`
+                base = job_id.split("_", 1)[0]
+                label = labels.get(base, {})
+                r["why"] = str(label.get("why", ""))[:MAX_WHY_CHARS]
+                r["kind"] = "launch"
+                # the pace: the pending range says it; once only running tasks
+                # are left, the ledger does (the whole array when unset)
+                array = int(label.get("array") or 1)
+                if "concurrency" not in r and array > 1:
+                    r["concurrency"] = int(label.get("concurrency") or array)
+            else:
+                r["experiment"] = ""
+                r["why"] = ""
+                r["kind"] = _kind(name)
+        view = {
+            "at": now,
+            "run_id": ctx.run_id,
+            "agent": ctx.agent_id,
+            "jobs": rows,
+            "lane": self._lane_load(),
+            "error": error,
+        }
+        self._queue_cache, self._queue_at = view, now
+        return view
+
+    def _lane_load(self) -> dict[str, Any]:
+        """The GPU lane's node states, refreshed once per `lane_gap_s` (a
+        second scheduler query per request would defeat the rate limit). A
+        failed sinfo is reported in the answer, never passed off as a lane
+        with no state."""
+        ctx = self.ctx
+        load = getattr(ctx.compute, "lane_load", None)
+        if load is None or not ctx.gpu_partition:
+            return {}
+        now = ctx.clock()
+        if self._lane_cache is not None and now - self._lane_at < ctx.lane_gap_s:
+            return self._lane_cache
+        try:
+            lane: dict[str, Any] = {
+                "partition": ctx.gpu_partition,
+                "nodes": load(ctx.gpu_partition),
+            }
+        except Exception as exc:
+            lane = {"partition": ctx.gpu_partition, "nodes": {}, "error": str(exc)[:200]}
+        self._lane_cache, self._lane_at = lane, now
+        return lane

outerloop_science-0.1.0.dist-info/METADATA

@@ -0,0 +1,152 @@
+Metadata-Version: 2.5
+Name: outerloop-science
+Version: 0.1.0
+Summary: Autonomous research agents that improve the benchmark you point them at, one verified pull request at a time
+Project-URL: Homepage, https://outerloop.science
+Project-URL: Repository, https://github.com/outerloop-science/outerloop
+Project-URL: Changelog, https://github.com/outerloop-science/outerloop/blob/main/CHANGELOG.md
+Project-URL: Issues, https://github.com/outerloop-science/outerloop/issues
+Author: Agentic Learning AI Lab, New York University
+License-Expression: Apache-2.0
+License-File: LICENSE
+License-File: NOTICE
+Requires-Python: >=3.12
+Requires-Dist: cryptography>=42
+Requires-Dist: pydantic>=2
+Requires-Dist: pyyaml>=6
+Provides-Extra: app-auth
+Description-Content-Type: text/markdown
+
+<picture>
+  <source media="(prefers-color-scheme: dark)" srcset="https://raw.githubusercontent.com/outerloop-science/outerloop/main/docs/assets/icon-dark.svg">
+  <img alt="Outerloop" src="https://raw.githubusercontent.com/outerloop-science/outerloop/main/docs/assets/icon-light.svg" width="132">
+</picture>
+
+# Outerloop
+
+[![ci](https://github.com/outerloop-science/outerloop/actions/workflows/ci.yml/badge.svg)](https://github.com/outerloop-science/outerloop/actions/workflows/ci.yml)
+[![PyPI](https://img.shields.io/pypi/v/outerloop-science.svg)](https://pypi.org/project/outerloop-science/)
+[![Python](https://img.shields.io/pypi/pyversions/outerloop-science.svg)](https://pypi.org/project/outerloop-science/)
+[![License](https://img.shields.io/badge/license-Apache--2.0-blue.svg)](LICENSE)
+
+**Autoresearch agents that improve your benchmark.**
+
+Outerloop runs AI agents on your own research code. An agent proposes a change,
+runs the experiment on your cluster, and opens a pull request only when your
+benchmark actually improves. Every attempt is written up, including the ones
+that failed.
+
+You run it yourself: your keys, your compute, your repos. Nothing reports back
+to us. It is built and used every day by the
+[Agentic Learning AI Lab](https://agenticlearning.ai) at NYU, where it
+co-develops our research codebases.
+
+## How it works
+
+1. **Propose.** An agent picks a hypothesis and writes the code change.
+2. **Experiment.** It runs the training on your cluster and reads the results.
+3. **Measure.** Outerloop scores the change against the base tree at the same
+   seed. Noise does not count as an improvement.
+4. **Review.** Reviewers read the change and the claim. If both hold up, a
+   pull request opens.
+5. **Record.** Every attempt gets a short report: hypothesis, change, outcome,
+   next step. Negative results included.
+
+Agents cannot touch the benchmark, the budgets, or your CI. Your branch
+protection and required checks apply to them as to any contributor. By default
+a pull request waits for a human; a repo can also let clean ones merge
+themselves.
+
+## Get started
+
+Three commands and one file. You need a repo with a benchmark command, an API
+key for the model that will write the code, and a Slurm cluster or one machine
+with a GPU.
+
+```bash
+pip install outerloop-science
+outerloop init     # where the loop runs, which repo, which model and its key, your GitHub identity
+```
+
+The wizard asks for a GitHub identity for the agents to open pull requests
+as. Pick `app` and it walks you through creating a GitHub App, under your
+account or under an organization you name, and installing it on the repo:
+two browser pages and a code pasted back. It then checks that the App can
+write the repo and tells you if it cannot. Pick `pat` if you already have a
+token. It writes the config and the key files; nothing to edit by hand. Then
+add one file, `.outerloop.yaml`, to the repo you want improved:
+
+```yaml
+benchmarks:
+  - name: my-benchmark
+    command: uv run python -m mypkg.eval --json   # prints {"success_rate": 0.42}
+    metric: success_rate
+    direction: max
+budgets:
+  gpu_hours_per_run: 8
+  runs_per_week: 10
+scope:
+  allowed: [src/]        # the only paths an agent may change
+roadmap: docs/roadmap.md # what the agents read for direction; never written
+```
+
+```bash
+outerloop start    # on a Slurm login node this submits the loop; without Slurm it runs in the foreground
+```
+
+Step by step, other model backends included:
+[docs/install.md](https://github.com/outerloop-science/outerloop/blob/main/docs/install.md).
+Everything the contract can say:
+[docs/contract.md](https://github.com/outerloop-science/outerloop/blob/main/docs/contract.md).
+
+## Only want pull request reviews?
+
+The reviewer works on its own. One workflow file and an API key, about five
+minutes, no bot account and no cluster. It comments on pull requests with
+concrete findings and never approves, blocks, or fails your build. See
+[docs/reviewer.md](https://github.com/outerloop-science/outerloop/blob/main/docs/reviewer.md).
+
+## Where it runs
+
+The first-class home is a Slurm cluster. There is no daemon: the loop is a
+chain of short jobs that resubmit themselves, so nothing listens and no inbound
+SSH is needed. Experiments and evaluations run inside your container image with
+no credentials, and GPU-hours are metered against the contract's budget. A
+single machine with a GPU works too, for cheap benchmarks. Details:
+[docs/compute.md](https://github.com/outerloop-science/outerloop/blob/main/docs/compute.md).
+
+## Safety by design
+
+- **Opt-in and contract-bound.** A repo takes part by granting the bot access
+  and committing a contract. The contract, your roadmap, and `.github/` are
+  never writable by an agent.
+- **Nothing on trust.** Outerloop measures every claim itself, on committed
+  trees, and re-verifies before a pull request exists.
+- **Untrusted input.** Pull request text, diffs, issues, web pages, and job
+  output are data, never instructions. Agents run without credentials.
+- **Budgets in code.** Launches, GPU-hours, and runs per week are enforced by
+  the kernel, not left to the agent.
+- **No model lock-in.** Claude Code, Codex, and hermes-agent are wired today;
+  backends are swappable.
+
+Full design: [docs/design/architecture.md](https://github.com/outerloop-science/outerloop/blob/main/docs/design/architecture.md) ·
+Roadmap: [docs/roadmap.md](https://github.com/outerloop-science/outerloop/blob/main/docs/roadmap.md)
+
+## Developing
+
+```bash
+uv sync
+uv run pre-commit install
+uv run pytest
+```
+
+| Path | Purpose |
+| --- | --- |
+| `src/outerloop/` | The kernel: contract, tick (the Slurm chain), attempt/orchestrator (the climb), measure/dispatch (evals as jobs), syscall (the author's tool), panel/verifier/review, github, harness backends |
+| `tests/` | Tiers: unit (default), `slow`, `llm`, `slurm` markers |
+| `scripts/` | Committed operational scripts (the tick chain, provisioning) |
+| `docs/` | Install guide, architecture and design notes, roadmap |
+
+## License
+
+Apache License 2.0 — see [LICENSE](https://github.com/outerloop-science/outerloop/blob/main/LICENSE) and [NOTICE](https://github.com/outerloop-science/outerloop/blob/main/NOTICE).

outerloop_science-0.1.0.dist-info/RECORD

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+outerloop_science-0.1.0.dist-info/RECORD,,

outerloop_science-0.1.0.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: hatchling 1.32.0
+Root-Is-Purelib: true
+Tag: py3-none-any

outerloop_science-0.1.0.dist-info/entry_points.txt

@@ -0,0 +1,2 @@
+[console_scripts]
+outerloop = outerloop.cli:main