osl-ephys 2.0.0__py2.py3-none-any.whl

osl_ephys/__init__.py

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+#!/usr/bin/python
+
+# --------------------------------------------------------
+# If user hasn't configured NumExpr environment the an irritating low-level log
+# is generated. We supress it by setting a default value of 8 if not already
+# set.
+#
+# https://numexpr.readthedocs.io/projects/NumExpr3/en/latest/user_guide.html#threadpool-configuration
+# https://github.com/pydata/numexpr/blob/7c2ef387d81cd450e8220fe4174cf46ec559994c/numexpr/utils.py#L118
+
+import os
+if 'NUMEXPR_MAX_THREADS' not in os.environ:
+    os.environ['NUMEXPR_MAX_THREADS'] = '8'
+
+# Some modules are chatty by default when a logger is on - set log-levels to
+# WARNING on setup
+import logging
+logging.getLogger("asyncio").setLevel(logging.WARNING)
+logging.getLogger("matplotlib").setLevel(logging.WARNING)
+logging.getLogger("PIL").setLevel(logging.WARNING)
+
+# Feels like there should be a better solution for this. How do we setup a
+# logger which only produces OSL outputs?!
+
+# --------------------------------------------------------
+# Main importing - set module structure here
+
+from . import utils  # noqa: F401, F403
+from . import preprocessing  # noqa: F401, F403
+from . import maxfilter  # noqa: F401, F403
+from . import report  # noqa: F401, F403
+from . import source_recon  # noqa: F401, F403
+from . import glm  # noqa: F401, F403
+
+# --------------------------------------------------------
+osl_logger = logging.getLogger(__name__)
+osl_logger.debug('osl-ephys main init complete')
+
+# --------------------------------------------------------
+__version__ = '2.0.0'

osl_ephys/glm/README.md

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+# GLM
+
+osl-ephys's GLM (generalized linear model) module, with modality specific functions based on https://pypi.org/project/glmtools/

osl_ephys/glm/__init__.py

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+
+from .glm_spectrum import *
+from .glm_epochs import *
+
+with open(os.path.join(os.path.dirname(__file__), "README.md"), 'r') as f:
+    __doc__ = f.read()