osiris-utils 1.2.2__py3-none-any.whl → 1.2.4__py3-none-any.whl

examples/example_InputDeck.ipynb

@@ -206,11 +206,11 @@
     "# this a dummy example where we change some values to #tag#\n",
     "print(\"Before\", deck[\"simulation\"])\n",
     "deck.set_tag(\n",
-    "    '42', # this has to be a string\n",
+    "    '42',  # this has to be a string\n",
     "    '#tag#',\n",
     ")\n",
     "deck.set_tag(\n",
-    "    '23:50:00', # this has to be a string\n",
+    "    '23:50:00',  # this has to be a string\n",
     "    '#tag#',\n",
     ")\n",
     "print(\"After 1\", deck[\"simulation\"])\n",
@@ -259,7 +259,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.13.5"
+   "version": "3.14.2"
   }
  },
  "nbformat": 4,

examples/example_Simulation_Diagnostic.ipynb

@@ -147,10 +147,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "print(sim[\"e3\"][100].shape)  # nx\n",
-    "print(e3[100].shape)  # nx\n",
+    "print(sim[\"e3\"][10].shape)  # nx\n",
+    "print(e3[10].shape)  # nx\n",
     "\n",
-    "print(\"Are they the same?\", np.isclose(sim[\"e3\"][100], e3[100]).all())"
+    "print(\"Are they the same?\", np.isclose(sim[\"e3\"][10], e3[10]).all())"
    ]
   },
   {
@@ -170,13 +170,13 @@
    "source": [
     "plt.figure(figsize=(12, 4))\n",
     "plt.subplot(121)\n",
-    "plt.plot(sim[\"e3\"].x, sim[\"e3\"][100], label=\"Simulation\", c=\"tab:orange\")\n",
+    "plt.plot(sim[\"e3\"].x, sim[\"e3\"][10], label=\"Simulation\", c=\"tab:orange\")\n",
     "plt.title(\"Using Simulation\")\n",
     "plt.xlabel(sim[\"e3\"].axis[0][\"plot_label\"])\n",
     "plt.legend()\n",
     "\n",
     "plt.subplot(122)\n",
-    "plt.plot(e3.x, e3[100], label=\"Diagnostic\", c=\"tab:blue\")\n",
+    "plt.plot(e3.x, e3[10], label=\"Diagnostic\", c=\"tab:blue\")\n",
     "plt.title(\"Using Diagnostic\")\n",
     "plt.xlabel(e3.axis[0][\"plot_label\"])\n",
     "plt.legend()\n",
@@ -270,7 +270,7 @@
    "source": [
     "plt.figure(figsize=(12, 4))\n",
     "plt.subplot(121)\n",
-    "plt.plot(sum_of_diag.x, sum_of_diag[100], label=\"T11 + vfl1\", c=\"tab:orange\")\n",
+    "plt.plot(sum_of_diag.x, sum_of_diag[10], label=\"T11 + vfl1\", c=\"tab:orange\")\n",
     "plt.title(\"Diagnostic from sum of two diagnostics\")\n",
     "plt.xlabel(sum_of_diag.axis[0][\"plot_label\"])\n",
     "plt.legend()\n",
@@ -300,7 +300,7 @@
    "outputs": [],
    "source": [
     "plt.figure(figsize=(6, 4))\n",
-    "plt.plot(nT.x, nT[100], label=r\"$n_eT_{11}$\", c=\"tab:green\")\n",
+    "plt.plot(nT.x, nT[10], label=r\"$n_eT_{11}$\", c=\"tab:green\")\n",
     "plt.title(r\"$n_eT_{11}$\")\n",
     "plt.xlabel(nT.axis[0][\"plot_label\"])\n",
     "plt.legend()\n",

examples/example_data/HIST/fld_ene

@@ -1,256 +1,15 @@
 ! EM field energy per field component
   Iter        Time                          B1                      B2                      B3                      E1                      E2                      E3
      0   0.0000000      0.0000000000000000E+00  0.0000000000000000E+00  0.0000000000000000E+00  0.0000000000000000E+00  0.0000000000000000E+00  0.0000000000000000E+00
-     1  0.99000000E-02  0.0000000000000000E+00  9.3350047424113699E-11  9.9513975374040657E-11  4.0288658328847664E-10  2.6327807233445116E-10  2.4895587745462798E-10
-     2  0.19800000E-01  0.0000000000000000E+00  3.0594423132143422E-10  3.0392760077797465E-10  1.5963608631331130E-09  5.0173475030461862E-10  4.5647332797518100E-10
-     3  0.29700000E-01  0.0000000000000000E+00  5.1604404687607700E-10  4.8345587916848181E-10  3.5630410883805427E-09  7.2411038377170374E-10  6.0282124697336928E-10
-     4  0.39600000E-01  0.0000000000000000E+00  7.2061628135891249E-10  6.8612643193998908E-10  6.2841601511617718E-09  9.1489496391126687E-10  7.2223807643472139E-10
-     5  0.49500000E-01  0.0000000000000000E+00  8.7332382066807728E-10  8.7462009846572664E-10  9.7310183096646133E-09  1.0823476786793148E-09  8.1412608168144009E-10
-     6  0.59400000E-01  0.0000000000000000E+00  1.0291501311349628E-09  1.0802441132554833E-09  1.3877918252669712E-08  1.2400366050973950E-09  8.7412346576957193E-10
-     7  0.69300000E-01  0.0000000000000000E+00  1.1722234172057994E-09  1.2729327797685394E-09  1.8712173301730819E-08  1.3775284668037829E-09  9.1346406761156975E-10
-     8  0.79200000E-01  0.0000000000000000E+00  1.2968849955089355E-09  1.5186028895850568E-09  2.4222017122939105E-08  1.4629997967164558E-09  9.9122417397476743E-10
-     9  0.89100000E-01  0.0000000000000000E+00  1.4286326082523534E-09  1.7390984259757601E-09  3.0368160974251541E-08  1.5685085768727538E-09  1.0277044285606457E-09
-    10  0.99000000E-01  0.0000000000000000E+00  1.6014484012714661E-09  1.9657028059240397E-09  3.7136434063697594E-08  1.7090725226280624E-09  1.0380369724793107E-09
-    11  0.10890000      0.0000000000000000E+00  1.7308760798720650E-09  2.1648050792265130E-09  4.4598847088467240E-08  1.8767497709574109E-09  1.0832842468275912E-09
-    12  0.11880000      0.0000000000000000E+00  1.8376402005203886E-09  2.3546627850472871E-09  5.2637983667052597E-08  2.0373403332082923E-09  1.1371382272915830E-09
-    13  0.12870000      0.0000000000000000E+00  1.9518027454676589E-09  2.5372414458286356E-09  6.1188876524475674E-08  2.1844732913852884E-09  1.1593113463779258E-09
-    14  0.13860000      0.0000000000000000E+00  2.0653340360996674E-09  2.7136007445883281E-09  7.0260972389380888E-08  2.3254034032523105E-09  1.1772253625831303E-09
-    15  0.14850000      0.0000000000000000E+00  2.1984383171147875E-09  2.8613300386960162E-09  7.9823010399420818E-08  2.4337194974462002E-09  1.2095495535655065E-09
-    16  0.15840000      0.0000000000000000E+00  2.3386315307816772E-09  2.9843644614367278E-09  8.9880815533476755E-08  2.5336016530594625E-09  1.2575556689207008E-09
-    17  0.16830000      0.0000000000000000E+00  2.4379515661647841E-09  3.1431856043738197E-09  1.0040140345870274E-07  2.6002083406027368E-09  1.2963118409635399E-09
-    18  0.17820000      0.0000000000000000E+00  2.4671615011813525E-09  3.3052628504197895E-09  1.1132726585246166E-07  2.6508716533699546E-09  1.3450014219940470E-09
-    19  0.18810000      0.0000000000000000E+00  2.4496695746836156E-09  3.4826293571640887E-09  1.2266606625872507E-07  2.7256792146630347E-09  1.4110051909146204E-09
     20  0.19800000      0.0000000000000000E+00  2.4362457981998515E-09  3.6378555289874534E-09  1.3435381164876939E-07  2.8334860107557599E-09  1.4411010800874168E-09
-    21  0.20790000      0.0000000000000000E+00  2.4472733929144683E-09  3.8194341478612770E-09  1.4633839018003816E-07  2.9509084015561257E-09  1.4879205505555260E-09
-    22  0.21780000      0.0000000000000000E+00  2.4588643971655433E-09  4.0173627383137821E-09  1.5863404116251656E-07  3.0718902385971452E-09  1.5386535667912961E-09
-    23  0.22770000      0.0000000000000000E+00  2.4912417534302091E-09  4.2048712151881078E-09  1.7125290641428041E-07  3.1872899135207146E-09  1.5846072235776337E-09
-    24  0.23760000      0.0000000000000000E+00  2.5575412583527373E-09  4.3271755953581256E-09  1.8423209122147534E-07  3.3494388256276465E-09  1.5996309345364365E-09
-    25  0.24750000      0.0000000000000000E+00  2.6336014674347717E-09  4.4287686735871149E-09  1.9748513125570855E-07  3.5114134061262289E-09  1.5665897885505378E-09
-    26  0.25740000      0.0000000000000000E+00  2.6727047993479612E-09  4.5540316475905320E-09  2.1114120490215920E-07  3.6366271076232134E-09  1.5328730283678419E-09
-    27  0.26730000      0.0000000000000000E+00  2.6900260218541139E-09  4.6675708055943859E-09  2.2522650467742856E-07  3.7651051491800991E-09  1.5147306741330018E-09
-    28  0.27720000      0.0000000000000000E+00  2.7176391771681478E-09  4.7620148858653012E-09  2.3935355526588413E-07  3.8761032663436431E-09  1.5278439692740141E-09
-    29  0.28710000      0.0000000000000000E+00  2.7915603305730689E-09  4.8160601412683924E-09  2.5384605616006297E-07  3.9990122894122037E-09  1.4958565644028789E-09
-    30  0.29700000      0.0000000000000000E+00  2.8724405083719767E-09  4.9145314090322283E-09  2.6868582160320280E-07  4.0916972929520281E-09  1.4517640567601116E-09
-    31  0.30690000      0.0000000000000000E+00  2.9547525237228169E-09  5.0257263572946927E-09  2.8403345352257816E-07  4.1629424899074218E-09  1.4186036817802413E-09
-    32  0.31680000      0.0000000000000000E+00  3.0346316401205382E-09  5.1118463997886880E-09  2.9958322999194514E-07  4.2331455474231312E-09  1.4167261539667169E-09
-    33  0.32670000      0.0000000000000000E+00  3.0915373075358257E-09  5.1659863944734073E-09  3.1532964675521510E-07  4.3476425767993851E-09  1.4385060025960476E-09
-    34  0.33660000      0.0000000000000000E+00  3.1409475894280135E-09  5.2218974963090456E-09  3.3123521829172578E-07  4.4774775645172185E-09  1.4857709639687742E-09
-    35  0.34650000      0.0000000000000000E+00  3.2007272413931153E-09  5.2805872754811311E-09  3.4730771246071717E-07  4.5743382241850856E-09  1.5312716453755944E-09
-    36  0.35640000      0.0000000000000000E+00  3.3134829846951918E-09  5.3607136852679089E-09  3.6355543502297494E-07  4.6399043049616764E-09  1.5541518192391631E-09
-    37  0.36630000      0.0000000000000000E+00  3.4182018140162489E-09  5.4723333919599646E-09  3.8004961988037689E-07  4.6932770977954521E-09  1.6036698694309127E-09
-    38  0.37620000      0.0000000000000000E+00  3.4886866270968082E-09  5.6273533846254312E-09  3.9669005425355537E-07  4.7021107379627629E-09  1.6804206802342962E-09
-    39  0.38610000      0.0000000000000000E+00  3.5436433984107456E-09  5.8186954601006557E-09  4.1345729784634731E-07  4.7082055853753385E-09  1.7349254925140673E-09
     40  0.39600000      0.0000000000000000E+00  3.5858596352402385E-09  6.0403015821630264E-09  4.3034338493883662E-07  4.6821489070907772E-09  1.7734261853679250E-09
-    41  0.40590000      0.0000000000000000E+00  3.6445115312759156E-09  6.2736606627214131E-09  4.4733920636038590E-07  4.6650955618972814E-09  1.7917448963265930E-09
-    42  0.41580000      0.0000000000000000E+00  3.7057075614068947E-09  6.4626506045209217E-09  4.6464898382649757E-07  4.6717799905522141E-09  1.8075022570992103E-09
-    43  0.42570000      0.0000000000000000E+00  3.7935618675377213E-09  6.6251799465142196E-09  4.8195559590482936E-07  4.7063339307603992E-09  1.8095844036794322E-09
-    44  0.43560000      0.0000000000000000E+00  3.8804107775507170E-09  6.7848863964963146E-09  4.9930229157210085E-07  4.7509082668712018E-09  1.7993873563888601E-09
-    45  0.44550000      0.0000000000000000E+00  3.9472437020470152E-09  6.9516203357709704E-09  5.1689165084858976E-07  4.7679278178152182E-09  1.8229706859527059E-09
-    46  0.45540000      0.0000000000000000E+00  4.0090489425832674E-09  7.1434173572119261E-09  5.3438239607143633E-07  4.7999853973662795E-09  1.8200371332367928E-09
-    47  0.46530000      0.0000000000000000E+00  4.0526071329949257E-09  7.3672098417696627E-09  5.5185410103351668E-07  4.8260179456017215E-09  1.7879137148350852E-09
-    48  0.47520000      0.0000000000000000E+00  4.0183086160176055E-09  7.6068300259084667E-09  5.6952562403254195E-07  4.8510393770730590E-09  1.8001445185483553E-09
-    49  0.48510000      0.0000000000000000E+00  3.9251824590949648E-09  7.8670611469711482E-09  5.8706864151437190E-07  4.8485732923773435E-09  1.8163279811506024E-09
-    50  0.49500000      0.0000000000000000E+00  3.8280469694476718E-09  8.1210628412729961E-09  6.0467247328574741E-07  4.8614433102176297E-09  1.8200187413809897E-09
-    51  0.50490000      0.0000000000000000E+00  3.7178223914137418E-09  8.3528274283357551E-09  6.2224217222407900E-07  4.8531371977865577E-09  1.8386087554243720E-09
-    52  0.51480000      0.0000000000000000E+00  3.5920995873563809E-09  8.5526668782602131E-09  6.3982532813571307E-07  4.8944437544596209E-09  1.8965727088139525E-09
-    53  0.52470000      0.0000000000000000E+00  3.4907649450024539E-09  8.7640195500580536E-09  6.5745215769828225E-07  4.9348706652020735E-09  1.9430044329794182E-09
-    54  0.53460000      0.0000000000000000E+00  3.4424059331560056E-09  8.9625960485624081E-09  6.7494118451573844E-07  4.9834960392109319E-09  1.9758705949877772E-09
-    55  0.54450000      0.0000000000000000E+00  3.4096162287379594E-09  9.1350560504634321E-09  6.9237524420406338E-07  5.0465304151120146E-09  2.0145554311370708E-09
-    56  0.55440000      0.0000000000000000E+00  3.3513562803335485E-09  9.3044487340267983E-09  7.0953510549432559E-07  5.0913252153781662E-09  2.0557648582486693E-09
-    57  0.56430000      0.0000000000000000E+00  3.2698256728239541E-09  9.5166390157123545E-09  7.2649730079191376E-07  5.1163612220785659E-09  2.0924757129067432E-09
-    58  0.57420000      0.0000000000000000E+00  3.1723460655601165E-09  9.7504800115143264E-09  7.4311737793347167E-07  5.1251241667028605E-09  2.1398667166657899E-09
-    59  0.58410000      0.0000000000000000E+00  3.0572745436373486E-09  9.9821483694235373E-09  7.5956754929508862E-07  5.0938722192865769E-09  2.2174411862311628E-09
     60  0.59400000      0.0000000000000000E+00  2.9779486270821683E-09  1.0179838700547280E-08  7.7606047083412092E-07  5.0603803654989509E-09  2.2632014977725547E-09
-    61  0.60390000      0.0000000000000000E+00  2.9620058463727800E-09  1.0363611331144448E-08  7.9249236773272774E-07  5.0081208076757949E-09  2.2459254230696100E-09
-    62  0.61380000      0.0000000000000000E+00  2.9502408838825229E-09  1.0538117258026655E-08  8.0862215910292837E-07  4.9334990537722634E-09  2.2295406605341512E-09
-    63  0.62370000      0.0000000000000000E+00  2.9294762272995432E-09  1.0667461441173273E-08  8.2477764852980200E-07  4.8994030016205552E-09  2.2273559942161708E-09
-    64  0.63360000      0.0000000000000000E+00  2.9196849898056251E-09  1.0792447373719910E-08  8.4079705559827109E-07  4.8853279848136339E-09  2.2134086739950381E-09
-    65  0.64350000      0.0000000000000000E+00  2.9127100100838375E-09  1.0946721998272828E-08  8.5675897073819019E-07  4.8817647711418991E-09  2.2149837747038885E-09
-    66  0.65340000      0.0000000000000000E+00  2.8956694128006556E-09  1.1143752403263882E-08  8.7264727083944202E-07  4.8693371886427891E-09  2.2647521473176798E-09
-    67  0.66330000      0.0000000000000000E+00  2.9227796113954845E-09  1.1322702904322693E-08  8.8863019839393757E-07  4.8737082675374954E-09  2.3205335941607260E-09
-    68  0.67320000      0.0000000000000000E+00  2.9766340614964241E-09  1.1486781562499064E-08  9.0465757831127980E-07  4.8559418027559096E-09  2.3634701048732249E-09
-    69  0.68310000      0.0000000000000000E+00  3.0047570706882017E-09  1.1648311492030717E-08  9.2054327789725966E-07  4.8194852198997131E-09  2.4235127490745066E-09
-    70  0.69300000      0.0000000000000000E+00  2.9913382259041038E-09  1.1818064985301870E-08  9.3634020490241384E-07  4.7778680574053741E-09  2.4899303589897327E-09
-    71  0.70290000      0.0000000000000000E+00  2.9684436961383860E-09  1.1991749640240220E-08  9.5204090279708075E-07  4.7223685293736964E-09  2.5277025993159711E-09
-    72  0.71280000      0.0000000000000000E+00  2.9824375810505143E-09  1.2113310334980785E-08  9.6768931078290688E-07  4.7073246796821327E-09  2.5324748270272955E-09
-    73  0.72270000      0.0000000000000000E+00  3.0049919957921097E-09  1.2236069483612250E-08  9.8330743726278536E-07  4.6629404318980400E-09  2.5524835569326447E-09
-    74  0.73260000      0.0000000000000000E+00  3.0927737755501072E-09  1.2316111170539994E-08  9.9894353197693341E-07  4.6438908726116629E-09  2.5408834875242204E-09
-    75  0.74250000      0.0000000000000000E+00  3.2087476563069058E-09  1.2323289110418007E-08  1.0147353563370725E-06  4.6747653494320786E-09  2.5236180247160585E-09
-    76  0.75240000      0.0000000000000000E+00  3.3052629452690885E-09  1.2301429010594278E-08  1.0303298073904929E-06  4.7094088575945394E-09  2.5350188311424259E-09
-    77  0.76230000      0.0000000000000000E+00  3.3974349308815716E-09  1.2265053555169018E-08  1.0459012692236053E-06  4.7288370298245113E-09  2.5519042898118058E-09
-    78  0.77220000      0.0000000000000000E+00  3.5114099769132170E-09  1.2230349463123946E-08  1.0612250264034232E-06  4.7314563037353791E-09  2.5243998276441118E-09
-    79  0.78210000      0.0000000000000000E+00  3.6418627103031918E-09  1.2206026807882545E-08  1.0763333288757971E-06  4.7183094876576892E-09  2.4858377630993996E-09
-    80  0.79200000      0.0000000000000000E+00  3.7493156609858344E-09  1.2149263156954351E-08  1.0912882646757282E-06  4.7189490406799726E-09  2.4770246681739894E-09
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