osiris-utils 1.1.4__py3-none-any.whl → 1.1.7__py3-none-any.whl

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Files changed (1061) hide show
  1. docs/source/_static/custom.css +53 -0
  2. docs/source/_static/quick_start_ez.png +0 -0
  3. docs/source/api/postprocess.rst +609 -0
  4. docs/source/api/sim_diag.rst +257 -0
  5. docs/source/api/utilities.rst +254 -0
  6. docs/source/conf.py +188 -0
  7. docs/source/contrib.rst +1 -0
  8. docs/source/index.rst +35 -0
  9. examples/edited-deck.1d +107 -0
  10. examples/example_Derivatives.ipynb +167 -0
  11. examples/example_FFT.ipynb +235 -0
  12. examples/example_InputDeck.ipynb +520 -0
  13. examples/example_Simulation_Diagnostic.ipynb +379 -0
  14. examples/example_data/HIST/fld_ene +256 -0
  15. examples/example_data/HIST/par01_ene +256 -0
  16. examples/example_data/HIST/par01_temp +255 -0
  17. examples/example_data/MS/DENSITY/electrons/charge/charge-electrons-000000.h5 +0 -0
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  233. examples/example_data/MS/DENSITY/electrons/charge/charge-electrons-000216.h5 +0 -0
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  270. examples/example_data/MS/DENSITY/electrons/charge/charge-electrons-000253.h5 +0 -0
  271. examples/example_data/MS/FLD/e3/e3-000000.h5 +0 -0
  272. examples/example_data/MS/FLD/e3/e3-000001.h5 +0 -0
  273. examples/example_data/MS/FLD/e3/e3-000002.h5 +0 -0
  274. examples/example_data/MS/FLD/e3/e3-000003.h5 +0 -0
  275. examples/example_data/MS/FLD/e3/e3-000004.h5 +0 -0
  276. examples/example_data/MS/FLD/e3/e3-000005.h5 +0 -0
  277. examples/example_data/MS/FLD/e3/e3-000006.h5 +0 -0
  278. examples/example_data/MS/FLD/e3/e3-000007.h5 +0 -0
  279. examples/example_data/MS/FLD/e3/e3-000008.h5 +0 -0
  280. examples/example_data/MS/FLD/e3/e3-000009.h5 +0 -0
  281. examples/example_data/MS/FLD/e3/e3-000010.h5 +0 -0
  282. examples/example_data/MS/FLD/e3/e3-000011.h5 +0 -0
  283. examples/example_data/MS/FLD/e3/e3-000012.h5 +0 -0
  284. examples/example_data/MS/FLD/e3/e3-000013.h5 +0 -0
  285. examples/example_data/MS/FLD/e3/e3-000014.h5 +0 -0
  286. examples/example_data/MS/FLD/e3/e3-000015.h5 +0 -0
  287. examples/example_data/MS/FLD/e3/e3-000016.h5 +0 -0
  288. examples/example_data/MS/FLD/e3/e3-000017.h5 +0 -0
  289. examples/example_data/MS/FLD/e3/e3-000018.h5 +0 -0
  290. examples/example_data/MS/FLD/e3/e3-000019.h5 +0 -0
  291. examples/example_data/MS/FLD/e3/e3-000020.h5 +0 -0
  292. examples/example_data/MS/FLD/e3/e3-000021.h5 +0 -0
  293. examples/example_data/MS/FLD/e3/e3-000022.h5 +0 -0
  294. examples/example_data/MS/FLD/e3/e3-000023.h5 +0 -0
  295. examples/example_data/MS/FLD/e3/e3-000024.h5 +0 -0
  296. examples/example_data/MS/FLD/e3/e3-000025.h5 +0 -0
  297. examples/example_data/MS/FLD/e3/e3-000026.h5 +0 -0
  298. examples/example_data/MS/FLD/e3/e3-000027.h5 +0 -0
  299. examples/example_data/MS/FLD/e3/e3-000028.h5 +0 -0
  300. examples/example_data/MS/FLD/e3/e3-000029.h5 +0 -0
  301. examples/example_data/MS/FLD/e3/e3-000030.h5 +0 -0
  302. examples/example_data/MS/FLD/e3/e3-000031.h5 +0 -0
  303. examples/example_data/MS/FLD/e3/e3-000032.h5 +0 -0
  304. examples/example_data/MS/FLD/e3/e3-000033.h5 +0 -0
  305. examples/example_data/MS/FLD/e3/e3-000034.h5 +0 -0
  306. examples/example_data/MS/FLD/e3/e3-000035.h5 +0 -0
  307. examples/example_data/MS/FLD/e3/e3-000036.h5 +0 -0
  308. examples/example_data/MS/FLD/e3/e3-000037.h5 +0 -0
  309. examples/example_data/MS/FLD/e3/e3-000038.h5 +0 -0
  310. examples/example_data/MS/FLD/e3/e3-000039.h5 +0 -0
  311. examples/example_data/MS/FLD/e3/e3-000040.h5 +0 -0
  312. examples/example_data/MS/FLD/e3/e3-000041.h5 +0 -0
  313. examples/example_data/MS/FLD/e3/e3-000042.h5 +0 -0
  314. examples/example_data/MS/FLD/e3/e3-000043.h5 +0 -0
  315. examples/example_data/MS/FLD/e3/e3-000044.h5 +0 -0
  316. examples/example_data/MS/FLD/e3/e3-000045.h5 +0 -0
  317. examples/example_data/MS/FLD/e3/e3-000046.h5 +0 -0
  318. examples/example_data/MS/FLD/e3/e3-000047.h5 +0 -0
  319. examples/example_data/MS/FLD/e3/e3-000048.h5 +0 -0
  320. examples/example_data/MS/FLD/e3/e3-000049.h5 +0 -0
  321. examples/example_data/MS/FLD/e3/e3-000050.h5 +0 -0
  322. examples/example_data/MS/FLD/e3/e3-000051.h5 +0 -0
  323. examples/example_data/MS/FLD/e3/e3-000052.h5 +0 -0
  324. examples/example_data/MS/FLD/e3/e3-000053.h5 +0 -0
  325. examples/example_data/MS/FLD/e3/e3-000054.h5 +0 -0
  326. examples/example_data/MS/FLD/e3/e3-000055.h5 +0 -0
  327. examples/example_data/MS/FLD/e3/e3-000056.h5 +0 -0
  328. examples/example_data/MS/FLD/e3/e3-000057.h5 +0 -0
  329. examples/example_data/MS/FLD/e3/e3-000058.h5 +0 -0
  330. examples/example_data/MS/FLD/e3/e3-000059.h5 +0 -0
  331. examples/example_data/MS/FLD/e3/e3-000060.h5 +0 -0
  332. examples/example_data/MS/FLD/e3/e3-000061.h5 +0 -0
  333. examples/example_data/MS/FLD/e3/e3-000062.h5 +0 -0
  334. examples/example_data/MS/FLD/e3/e3-000063.h5 +0 -0
  335. examples/example_data/MS/FLD/e3/e3-000064.h5 +0 -0
  336. examples/example_data/MS/FLD/e3/e3-000065.h5 +0 -0
  337. examples/example_data/MS/FLD/e3/e3-000066.h5 +0 -0
  338. examples/example_data/MS/FLD/e3/e3-000067.h5 +0 -0
  339. examples/example_data/MS/FLD/e3/e3-000068.h5 +0 -0
  340. examples/example_data/MS/FLD/e3/e3-000069.h5 +0 -0
  341. examples/example_data/MS/FLD/e3/e3-000070.h5 +0 -0
  342. examples/example_data/MS/FLD/e3/e3-000071.h5 +0 -0
  343. examples/example_data/MS/FLD/e3/e3-000072.h5 +0 -0
  344. examples/example_data/MS/FLD/e3/e3-000073.h5 +0 -0
  345. examples/example_data/MS/FLD/e3/e3-000074.h5 +0 -0
  346. examples/example_data/MS/FLD/e3/e3-000075.h5 +0 -0
  347. examples/example_data/MS/FLD/e3/e3-000076.h5 +0 -0
  348. examples/example_data/MS/FLD/e3/e3-000077.h5 +0 -0
  349. examples/example_data/MS/FLD/e3/e3-000078.h5 +0 -0
  350. examples/example_data/MS/FLD/e3/e3-000079.h5 +0 -0
  351. examples/example_data/MS/FLD/e3/e3-000080.h5 +0 -0
  352. examples/example_data/MS/FLD/e3/e3-000081.h5 +0 -0
  353. examples/example_data/MS/FLD/e3/e3-000082.h5 +0 -0
  354. examples/example_data/MS/FLD/e3/e3-000083.h5 +0 -0
  355. examples/example_data/MS/FLD/e3/e3-000084.h5 +0 -0
  356. examples/example_data/MS/FLD/e3/e3-000085.h5 +0 -0
  357. examples/example_data/MS/FLD/e3/e3-000086.h5 +0 -0
  358. examples/example_data/MS/FLD/e3/e3-000087.h5 +0 -0
  359. examples/example_data/MS/FLD/e3/e3-000088.h5 +0 -0
  360. examples/example_data/MS/FLD/e3/e3-000089.h5 +0 -0
  361. examples/example_data/MS/FLD/e3/e3-000090.h5 +0 -0
  362. examples/example_data/MS/FLD/e3/e3-000091.h5 +0 -0
  363. examples/example_data/MS/FLD/e3/e3-000092.h5 +0 -0
  364. examples/example_data/MS/FLD/e3/e3-000093.h5 +0 -0
  365. examples/example_data/MS/FLD/e3/e3-000094.h5 +0 -0
  366. examples/example_data/MS/FLD/e3/e3-000095.h5 +0 -0
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  368. examples/example_data/MS/FLD/e3/e3-000097.h5 +0 -0
  369. examples/example_data/MS/FLD/e3/e3-000098.h5 +0 -0
  370. examples/example_data/MS/FLD/e3/e3-000099.h5 +0 -0
  371. examples/example_data/MS/FLD/e3/e3-000100.h5 +0 -0
  372. examples/example_data/MS/FLD/e3/e3-000101.h5 +0 -0
  373. examples/example_data/MS/FLD/e3/e3-000102.h5 +0 -0
  374. examples/example_data/MS/FLD/e3/e3-000103.h5 +0 -0
  375. examples/example_data/MS/FLD/e3/e3-000104.h5 +0 -0
  376. examples/example_data/MS/FLD/e3/e3-000105.h5 +0 -0
  377. examples/example_data/MS/FLD/e3/e3-000106.h5 +0 -0
  378. examples/example_data/MS/FLD/e3/e3-000107.h5 +0 -0
  379. examples/example_data/MS/FLD/e3/e3-000108.h5 +0 -0
  380. examples/example_data/MS/FLD/e3/e3-000109.h5 +0 -0
  381. examples/example_data/MS/FLD/e3/e3-000110.h5 +0 -0
  382. examples/example_data/MS/FLD/e3/e3-000111.h5 +0 -0
  383. examples/example_data/MS/FLD/e3/e3-000112.h5 +0 -0
  384. examples/example_data/MS/FLD/e3/e3-000113.h5 +0 -0
  385. examples/example_data/MS/FLD/e3/e3-000114.h5 +0 -0
  386. examples/example_data/MS/FLD/e3/e3-000115.h5 +0 -0
  387. examples/example_data/MS/FLD/e3/e3-000116.h5 +0 -0
  388. examples/example_data/MS/FLD/e3/e3-000117.h5 +0 -0
  389. examples/example_data/MS/FLD/e3/e3-000118.h5 +0 -0
  390. examples/example_data/MS/FLD/e3/e3-000119.h5 +0 -0
  391. examples/example_data/MS/FLD/e3/e3-000120.h5 +0 -0
  392. examples/example_data/MS/FLD/e3/e3-000121.h5 +0 -0
  393. examples/example_data/MS/FLD/e3/e3-000122.h5 +0 -0
  394. examples/example_data/MS/FLD/e3/e3-000123.h5 +0 -0
  395. examples/example_data/MS/FLD/e3/e3-000124.h5 +0 -0
  396. examples/example_data/MS/FLD/e3/e3-000125.h5 +0 -0
  397. examples/example_data/MS/FLD/e3/e3-000126.h5 +0 -0
  398. examples/example_data/MS/FLD/e3/e3-000127.h5 +0 -0
  399. examples/example_data/MS/FLD/e3/e3-000128.h5 +0 -0
  400. examples/example_data/MS/FLD/e3/e3-000129.h5 +0 -0
  401. examples/example_data/MS/FLD/e3/e3-000130.h5 +0 -0
  402. examples/example_data/MS/FLD/e3/e3-000131.h5 +0 -0
  403. examples/example_data/MS/FLD/e3/e3-000132.h5 +0 -0
  404. examples/example_data/MS/FLD/e3/e3-000133.h5 +0 -0
  405. examples/example_data/MS/FLD/e3/e3-000134.h5 +0 -0
  406. examples/example_data/MS/FLD/e3/e3-000135.h5 +0 -0
  407. examples/example_data/MS/FLD/e3/e3-000136.h5 +0 -0
  408. examples/example_data/MS/FLD/e3/e3-000137.h5 +0 -0
  409. examples/example_data/MS/FLD/e3/e3-000138.h5 +0 -0
  410. examples/example_data/MS/FLD/e3/e3-000139.h5 +0 -0
  411. examples/example_data/MS/FLD/e3/e3-000140.h5 +0 -0
  412. examples/example_data/MS/FLD/e3/e3-000141.h5 +0 -0
  413. examples/example_data/MS/FLD/e3/e3-000142.h5 +0 -0
  414. examples/example_data/MS/FLD/e3/e3-000143.h5 +0 -0
  415. examples/example_data/MS/FLD/e3/e3-000144.h5 +0 -0
  416. examples/example_data/MS/FLD/e3/e3-000145.h5 +0 -0
  417. examples/example_data/MS/FLD/e3/e3-000146.h5 +0 -0
  418. examples/example_data/MS/FLD/e3/e3-000147.h5 +0 -0
  419. examples/example_data/MS/FLD/e3/e3-000148.h5 +0 -0
  420. examples/example_data/MS/FLD/e3/e3-000149.h5 +0 -0
  421. examples/example_data/MS/FLD/e3/e3-000150.h5 +0 -0
  422. examples/example_data/MS/FLD/e3/e3-000151.h5 +0 -0
  423. examples/example_data/MS/FLD/e3/e3-000152.h5 +0 -0
  424. examples/example_data/MS/FLD/e3/e3-000153.h5 +0 -0
  425. examples/example_data/MS/FLD/e3/e3-000154.h5 +0 -0
  426. examples/example_data/MS/FLD/e3/e3-000155.h5 +0 -0
  427. examples/example_data/MS/FLD/e3/e3-000156.h5 +0 -0
  428. examples/example_data/MS/FLD/e3/e3-000157.h5 +0 -0
  429. examples/example_data/MS/FLD/e3/e3-000158.h5 +0 -0
  430. examples/example_data/MS/FLD/e3/e3-000159.h5 +0 -0
  431. examples/example_data/MS/FLD/e3/e3-000160.h5 +0 -0
  432. examples/example_data/MS/FLD/e3/e3-000161.h5 +0 -0
  433. examples/example_data/MS/FLD/e3/e3-000162.h5 +0 -0
  434. examples/example_data/MS/FLD/e3/e3-000163.h5 +0 -0
  435. examples/example_data/MS/FLD/e3/e3-000164.h5 +0 -0
  436. examples/example_data/MS/FLD/e3/e3-000165.h5 +0 -0
  437. examples/example_data/MS/FLD/e3/e3-000166.h5 +0 -0
  438. examples/example_data/MS/FLD/e3/e3-000167.h5 +0 -0
  439. examples/example_data/MS/FLD/e3/e3-000168.h5 +0 -0
  440. examples/example_data/MS/FLD/e3/e3-000169.h5 +0 -0
  441. examples/example_data/MS/FLD/e3/e3-000170.h5 +0 -0
  442. examples/example_data/MS/FLD/e3/e3-000171.h5 +0 -0
  443. examples/example_data/MS/FLD/e3/e3-000172.h5 +0 -0
  444. examples/example_data/MS/FLD/e3/e3-000173.h5 +0 -0
  445. examples/example_data/MS/FLD/e3/e3-000174.h5 +0 -0
  446. examples/example_data/MS/FLD/e3/e3-000175.h5 +0 -0
  447. examples/example_data/MS/FLD/e3/e3-000176.h5 +0 -0
  448. examples/example_data/MS/FLD/e3/e3-000177.h5 +0 -0
  449. examples/example_data/MS/FLD/e3/e3-000178.h5 +0 -0
  450. examples/example_data/MS/FLD/e3/e3-000179.h5 +0 -0
  451. examples/example_data/MS/FLD/e3/e3-000180.h5 +0 -0
  452. examples/example_data/MS/FLD/e3/e3-000181.h5 +0 -0
  453. examples/example_data/MS/FLD/e3/e3-000182.h5 +0 -0
  454. examples/example_data/MS/FLD/e3/e3-000183.h5 +0 -0
  455. examples/example_data/MS/FLD/e3/e3-000184.h5 +0 -0
  456. examples/example_data/MS/FLD/e3/e3-000185.h5 +0 -0
  457. examples/example_data/MS/FLD/e3/e3-000186.h5 +0 -0
  458. examples/example_data/MS/FLD/e3/e3-000187.h5 +0 -0
  459. examples/example_data/MS/FLD/e3/e3-000188.h5 +0 -0
  460. examples/example_data/MS/FLD/e3/e3-000189.h5 +0 -0
  461. examples/example_data/MS/FLD/e3/e3-000190.h5 +0 -0
  462. examples/example_data/MS/FLD/e3/e3-000191.h5 +0 -0
  463. examples/example_data/MS/FLD/e3/e3-000192.h5 +0 -0
  464. examples/example_data/MS/FLD/e3/e3-000193.h5 +0 -0
  465. examples/example_data/MS/FLD/e3/e3-000194.h5 +0 -0
  466. examples/example_data/MS/FLD/e3/e3-000195.h5 +0 -0
  467. examples/example_data/MS/FLD/e3/e3-000196.h5 +0 -0
  468. examples/example_data/MS/FLD/e3/e3-000197.h5 +0 -0
  469. examples/example_data/MS/FLD/e3/e3-000198.h5 +0 -0
  470. examples/example_data/MS/FLD/e3/e3-000199.h5 +0 -0
  471. examples/example_data/MS/FLD/e3/e3-000200.h5 +0 -0
  472. examples/example_data/MS/FLD/e3/e3-000201.h5 +0 -0
  473. examples/example_data/MS/FLD/e3/e3-000202.h5 +0 -0
  474. examples/example_data/MS/FLD/e3/e3-000203.h5 +0 -0
  475. examples/example_data/MS/FLD/e3/e3-000204.h5 +0 -0
  476. examples/example_data/MS/FLD/e3/e3-000205.h5 +0 -0
  477. examples/example_data/MS/FLD/e3/e3-000206.h5 +0 -0
  478. examples/example_data/MS/FLD/e3/e3-000207.h5 +0 -0
  479. examples/example_data/MS/FLD/e3/e3-000208.h5 +0 -0
  480. examples/example_data/MS/FLD/e3/e3-000209.h5 +0 -0
  481. examples/example_data/MS/FLD/e3/e3-000210.h5 +0 -0
  482. examples/example_data/MS/FLD/e3/e3-000211.h5 +0 -0
  483. examples/example_data/MS/FLD/e3/e3-000212.h5 +0 -0
  484. examples/example_data/MS/FLD/e3/e3-000213.h5 +0 -0
  485. examples/example_data/MS/FLD/e3/e3-000214.h5 +0 -0
  486. examples/example_data/MS/FLD/e3/e3-000215.h5 +0 -0
  487. examples/example_data/MS/FLD/e3/e3-000216.h5 +0 -0
  488. examples/example_data/MS/FLD/e3/e3-000217.h5 +0 -0
  489. examples/example_data/MS/FLD/e3/e3-000218.h5 +0 -0
  490. examples/example_data/MS/FLD/e3/e3-000219.h5 +0 -0
  491. examples/example_data/MS/FLD/e3/e3-000220.h5 +0 -0
  492. examples/example_data/MS/FLD/e3/e3-000221.h5 +0 -0
  493. examples/example_data/MS/FLD/e3/e3-000222.h5 +0 -0
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  1024. examples/example_data/MS/UDIST/electrons/vfl1/vfl1-electrons-000245.h5 +0 -0
  1025. examples/example_data/MS/UDIST/electrons/vfl1/vfl1-electrons-000246.h5 +0 -0
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  1032. examples/example_data/MS/UDIST/electrons/vfl1/vfl1-electrons-000253.h5 +0 -0
  1033. examples/example_data/MS/run-info +132 -0
  1034. examples/example_data/TIMINGS/timings-final +31 -0
  1035. examples/example_data/run-info +132 -0
  1036. examples/example_data/thermal.1d +108 -0
  1037. examples/quick_start.ipynb +82 -0
  1038. examples/quick_start.py +41 -0
  1039. osiris_utils/__init__.py +85 -20
  1040. osiris_utils/data/data.py +591 -187
  1041. osiris_utils/data/diagnostic.py +644 -239
  1042. osiris_utils/data/simulation.py +77 -49
  1043. osiris_utils/decks/decks.py +11 -29
  1044. osiris_utils/postprocessing/derivative.py +111 -82
  1045. osiris_utils/postprocessing/fft.py +77 -67
  1046. osiris_utils/postprocessing/field_centering.py +336 -0
  1047. osiris_utils/postprocessing/heatflux_correction.py +200 -0
  1048. osiris_utils/postprocessing/mft.py +108 -70
  1049. osiris_utils/postprocessing/mft_for_gridfile.py +14 -11
  1050. osiris_utils/postprocessing/postprocess.py +8 -7
  1051. osiris_utils/postprocessing/pressure_correction.py +187 -0
  1052. osiris_utils/utils.py +174 -33
  1053. {osiris_utils-1.1.4.dist-info → osiris_utils-1.1.7.dist-info}/METADATA +58 -25
  1054. osiris_utils-1.1.7.dist-info/RECORD +1062 -0
  1055. {osiris_utils-1.1.4.dist-info → osiris_utils-1.1.7.dist-info}/WHEEL +1 -1
  1056. osiris_utils-1.1.7.dist-info/top_level.txt +3 -0
  1057. osiris_utils/gui/gui.py +0 -266
  1058. osiris_utils-1.1.4.dist-info/RECORD +0 -22
  1059. osiris_utils-1.1.4.dist-info/top_level.txt +0 -1
  1060. /osiris_utils/{gui/__init__.py → py.typed} +0 -0
  1061. {osiris_utils-1.1.4.dist-info → osiris_utils-1.1.7.dist-info}/licenses/LICENSE.txt +0 -0