ose-app 0.2.5__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ose_app/AppModule.py +98 -0
- ose_app/OntologyDataStore.py +464 -0
- ose_app/PermissionManager.py +78 -0
- ose_app/SpreadsheetSearcher.py +197 -0
- ose_app/__init__.py +130 -0
- ose_app/app.py +10 -0
- ose_app/constants.py +1 -0
- ose_app/custom_json.py +23 -0
- ose_app/default_config.py +39 -0
- ose_app/gh.py +60 -0
- ose_app/guards/__init__.py +0 -0
- ose_app/guards/verify_login.py +20 -0
- ose_app/guards/with_permission.py +54 -0
- ose_app/jinja_extensions/__init__.py +42 -0
- ose_app/routes/__init__.py +24 -0
- ose_app/routes/admin.py +108 -0
- ose_app/routes/api/__init__.py +23 -0
- ose_app/routes/api/edit.py +162 -0
- ose_app/routes/api/external.py +198 -0
- ose_app/routes/api/plugins.py +22 -0
- ose_app/routes/api/release.py +380 -0
- ose_app/routes/api/repos.py +55 -0
- ose_app/routes/api/scripts.py +49 -0
- ose_app/routes/api/search.py +19 -0
- ose_app/routes/api/settings.py +115 -0
- ose_app/routes/api/validate.py +264 -0
- ose_app/routes/api/visualise.py +228 -0
- ose_app/routes/auth.py +44 -0
- ose_app/routes/edit.py +690 -0
- ose_app/routes/main.py +100 -0
- ose_app/routes/search.py +42 -0
- ose_app/routes/status.py +10 -0
- ose_app/routes/visualize.py +108 -0
- ose_app/static/addicto.release.json +129 -0
- ose_app/static/bcio.release.json +321 -0
- ose_app/static/example.json +134 -0
- ose_app/static/excel-bootstrap-table-filter-bundle.js +326 -0
- ose_app/static/excel-bootstrap-table-filter-bundle.js.map +1 -0
- ose_app/static/excel-bootstrap-table-filter-bundle.min.js +2 -0
- ose_app/static/excel-bootstrap-table-filter-bundle.min.js.map +1 -0
- ose_app/static/excel-bootstrap-table-filter-style.css +78 -0
- ose_app/static/gmho.release.json +139 -0
- ose_app/static/js/admin.js +2 -0
- ose_app/static/js/admin.js.map +1 -0
- ose_app/static/js/assets/CollapsibleCard.css +1 -0
- ose_app/static/js/assets/editor.css +1 -0
- ose_app/static/js/assets/release.css +1 -0
- ose_app/static/js/assets/settings.css +1 -0
- ose_app/static/js/assets/visualise.css +1 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-CgGO-ddH-BDr_frBe.js +2 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-CgGO-ddH-BDr_frBe.js.map +1 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-CgGO-ddH-MonxH8xj.js +2 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-CgGO-ddH-MonxH8xj.js.map +1 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-DKAZyKKr-DTksKjtf.js +2 -0
- ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-DKAZyKKr-DTksKjtf.js.map +1 -0
- ose_app/static/js/chunks/CollapsibleCard-BQR8R54V.js +2 -0
- ose_app/static/js/chunks/CollapsibleCard-BQR8R54V.js.map +1 -0
- ose_app/static/js/chunks/CollapsibleCard-DgwkQKDg.js +2 -0
- ose_app/static/js/chunks/CollapsibleCard-DgwkQKDg.js.map +1 -0
- ose_app/static/js/chunks/CollapsibleCard-DoX0kPCZ.js +2 -0
- ose_app/static/js/chunks/CollapsibleCard-DoX0kPCZ.js.map +1 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-CBzsmnqW.js +43 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-CBzsmnqW.js.map +1 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-EcINi797.js +43 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-EcINi797.js.map +1 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-bumDOBqD.js +43 -0
- ose_app/static/js/chunks/Diagnostic.vue_vue_type_script_setup_true_lang-bumDOBqD.js.map +1 -0
- ose_app/static/js/chunks/_plugin-vue_export-helper-DlAUqK2U.js +2 -0
- ose_app/static/js/chunks/_plugin-vue_export-helper-DlAUqK2U.js.map +1 -0
- ose_app/static/js/chunks/bootbox-D3SJ_Fwv.js +2 -0
- ose_app/static/js/chunks/bootbox-D3SJ_Fwv.js.map +1 -0
- ose_app/static/js/chunks/constants-CzBHF1EN.js +2 -0
- ose_app/static/js/chunks/constants-CzBHF1EN.js.map +1 -0
- ose_app/static/js/chunks/constants-DL6Hx3V0.js +2 -0
- ose_app/static/js/chunks/constants-DL6Hx3V0.js.map +1 -0
- ose_app/static/js/chunks/constants-DPgwRV4l.js +2 -0
- ose_app/static/js/chunks/constants-DPgwRV4l.js.map +1 -0
- ose_app/static/js/chunks/filter-Bx-PU1OL.js +18 -0
- ose_app/static/js/chunks/filter-Bx-PU1OL.js.map +1 -0
- ose_app/static/js/chunks/filter-CdAXK93b.js +18 -0
- ose_app/static/js/chunks/filter-CdAXK93b.js.map +1 -0
- ose_app/static/js/chunks/filter-CiYqP1_r.js +2 -0
- ose_app/static/js/chunks/filter-CiYqP1_r.js.map +1 -0
- ose_app/static/js/chunks/index-sLCKmIWG-B5BYNF2N.js +2 -0
- ose_app/static/js/chunks/index-sLCKmIWG-B5BYNF2N.js.map +1 -0
- ose_app/static/js/chunks/index-sLCKmIWG-Cb9lQq-c.js +9 -0
- ose_app/static/js/chunks/index-sLCKmIWG-Cb9lQq-c.js.map +1 -0
- ose_app/static/js/chunks/index-sLCKmIWG-umQeu_-w.js +3 -0
- ose_app/static/js/chunks/index-sLCKmIWG-umQeu_-w.js.map +1 -0
- ose_app/static/js/editor.js +36 -0
- ose_app/static/js/editor.js.map +1 -0
- ose_app/static/js/release.js +6 -0
- ose_app/static/js/release.js.map +1 -0
- ose_app/static/js/settings.js +2 -0
- ose_app/static/js/settings.js.map +1 -0
- ose_app/static/js/visualise.js +3 -0
- ose_app/static/js/visualise.js.map +1 -0
- ose_app/static/main.css +1 -0
- ose_app/static/main.css.map +7 -0
- ose_app/static/main.scss +147 -0
- ose_app/static/mindmup-editabletable.js +131 -0
- ose_app/static/schema/release_script.json +215 -0
- ose_app/static/schema/req_body_edit.json +35 -0
- ose_app/static/schema/req_body_guess_parent.json +38 -0
- ose_app/static/schema/req_body_import.json +47 -0
- ose_app/static/schema/req_body_release_start.json +9 -0
- ose_app/static/schema/req_body_visualise.json +18 -0
- ose_app/static/test.dot +190 -0
- ose_app/static/workflows/externals.yaml.jinja2 +44 -0
- ose_app/templates/access_show_visualisation_for_ids.html +120 -0
- ose_app/templates/admin/dashboard.html +18 -0
- ose_app/templates/admin/rebuild_index.html +85 -0
- ose_app/templates/admin/release.html +46 -0
- ose_app/templates/admin/settings.html +23 -0
- ose_app/templates/base.html +151 -0
- ose_app/templates/edit.html +21 -0
- ose_app/templates/edit_external.html +491 -0
- ose_app/templates/forbidden.html +9 -0
- ose_app/templates/index.html +33 -0
- ose_app/templates/loggedout.html +21 -0
- ose_app/templates/repo.html +294 -0
- ose_app/templates/testgeneratedbyapi.html +294 -0
- ose_app/templates/visualise.html +17 -0
- ose_app-0.2.5.dist-info/METADATA +27 -0
- ose_app-0.2.5.dist-info/RECORD +127 -0
- ose_app-0.2.5.dist-info/WHEEL +5 -0
- ose_app-0.2.5.dist-info/top_level.txt +1 -0
ose_app/static/test.dot
ADDED
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@@ -0,0 +1,190 @@
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digraph {
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OBO_ADDICTO_0000272 [label="cigarette\npack\nsize",shape=box,font=helvetica]
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OBO_ADDICTO_0000852 [label=PUFFiT,shape=box,font=helvetica]
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OBO_ADDICTO_0000224 [label="e-cigarette\npod\ndevice",shape=box,font=helvetica]
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OBO_ADDICTO_0000536 [label="liquid\nproduct",shape=box,font=helvetica]
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+
OBO_ADDICTO_0000625 [label="menthol\nflavoured\ne-liquid",shape=box,font=helvetica]
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+
OBO_ADDICTO_0000256 [label="mechanical\nmod\ne-cigarette",shape=box,font=helvetica]
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+
OBO_ADDICTO_0000855 [label="THC\nvaping\ndevice\npart",shape=box,font=helvetica]
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9
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+
OBO_ADDICTO_0000535 [label="heated\ntobacco-containing\nproduct\npart",shape=box,font=helvetica]
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10
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OBO_ADDICTO_0000296 [label=squonker,shape=box,font=helvetica]
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OBO_ADDICTO_0000227 [label="e-cigarette\ntank",shape=box,font=helvetica]
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OBO_ADDICTO_0000200 [label=cigar,shape=box,font=helvetica]
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OBO_ADDICTO_0000301 [label="THC\ncontaining\ne-liquid",shape=box,font=helvetica]
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14
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+
OBO_ADDICTO_0000213 [label="e-cigarette\natomiser",shape=box,font=helvetica]
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+
OBO_ADDICTO_0000285 [label="regulated\nbox\nmod\ne-cigarette",shape=box,font=helvetica]
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16
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+
OBO_ADDICTO_0000851 [label=Kretek,shape=box,font=helvetica]
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OBO_ADDICTO_0000239 [label="flavoured\ne-liquid",shape=box,font=helvetica]
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OBO_ADDICTO_0000299 [label="tank\ntype\ne-cigarette",shape=box,font=helvetica]
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OBO_ADDICTO_0000247 [label="high\nnicotine\nconcentration\ne-liquid",shape=box,font=helvetica]
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+
OBO_ADDICTO_0000827 [label="product\npart",shape=box,font=helvetica]
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OBO_ADDICTO_0000283 [label="rechargeable\ncigalike\ne-cigarette",shape=box,font=helvetica]
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22
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OBO_ADDICTO_0000303 [label=tobacco,shape=box,font=helvetica]
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OBO_ADDICTO_0000251 [label="licensed\nnicotine\nproduct",shape=box,font=helvetica]
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24
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OBO_ADDICTO_0000882 [label="oil\nbased\ntabletop\nvaporiser",shape=box,font=helvetica]
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OBO_ADDICTO_0000212 [label="e-cigarette",shape=box,font=helvetica]
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OBO_ADDICTO_0000207 [label="combustible\ntobacco-containing\nproduct",shape=box,font=helvetica]
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27
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+
OBO_ADDICTO_0000737 [label=blunt,shape=box,font=helvetica]
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OBO_ADDICTO_0000221 [label="e-cigarette\nmod",shape=box,font=helvetica]
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OBO_ADDICTO_0000294 [label="nasal\nsnuff",shape=box,font=helvetica]
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OBO_ADDICTO_0000317 [label="vaping\ndevice\npart",shape=box,font=helvetica]
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OBO_ADDICTO_0000308 [label="FDA-defined\ntobacco\nproduct",shape=box,font=helvetica]
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32
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+
OBO_ADDICTO_0000304 [label="processed\ntobacco",shape=box,font=helvetica]
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33
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+
OBO_ADDICTO_0000210 [label="disposable\ne-cigarette",shape=box,font=helvetica]
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34
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+
OBO_ADDICTO_0000287 [label="second\ngeneration\ne-cigarette",shape=box,font=helvetica]
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35
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+
OBO_ADDICTO_0000312 [label="tobacco-flavoured\ne-liquid",shape=box,font=helvetica]
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36
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OBO_ADDICTO_0000859 [label="e-cigarette\nproduct\nstandard",shape=box,font=helvetica]
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37
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+
OBO_ADDICTO_0000216 [label="e-cigarette\ncartridge",shape=box,font=helvetica]
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38
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+
OBO_ADDICTO_0000315 [label="vape\npen",shape=box,font=helvetica]
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39
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OBO_ADDICTO_0000753 [label="menthol\ncigarette",shape=box,font=helvetica]
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40
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+
OBO_ADDICTO_0000284 [label="rechargeable\ne-cigarette",shape=box,font=helvetica]
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41
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+
OBO_ADDICTO_0000250 [label="juul\npod",shape=box,font=helvetica]
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42
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OBO_ADDICTO_0000254 [label="manufactured\ncigarette",shape=box,font=helvetica]
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43
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+
OBO_ADDICTO_0000237 [label="fixed\npower\ne-cigarette\natomiser",shape=box,font=helvetica]
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44
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+
OBO_ADDICTO_0000201 [label=cigarette,shape=box,font=helvetica]
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45
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+
OBO_ADDICTO_0000817 [label="dry\nherb\nvaporiser\npen",shape=box,font=helvetica]
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46
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OBO_ADDICTO_0000858 [label="dry\nherb\ntabletop\nvaporiser",shape=box,font=helvetica]
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47
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+
OBO_ADDICTO_0000231 [label="electronic\nvaping\ndevice",shape=box,font=helvetica]
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48
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+
OBO_ADDICTO_0000190 [label="adjustable\npower\ne-cigarette\natomiser",shape=box,font=helvetica]
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49
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+
OBO_ADDICTO_0000267 [label="oil\nbased\nTHC\ne-liquid",shape=box,font=helvetica]
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50
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+
OBO_ADDICTO_0000218 [label="e-cigarette\nliquid\ncontainer",shape=box,font=helvetica]
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51
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OBO_ADDICTO_0000230 [label="e-cigarette\nwith\ndripping\natomiser",shape=box,font=helvetica]
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52
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OBO_ADDICTO_0000311 [label="tobacco-containing\nproduct",shape=box,font=helvetica]
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53
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+
OBO_ADDICTO_0000282 [label="rebuildable\ne-cigarette\natomiser",shape=box,font=helvetica]
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54
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+
OBO_ADDICTO_0000866 [label="tabletop\nvaporiser",shape=box,font=helvetica]
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55
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+
OBO_ADDICTO_0000214 [label="e-cigarette\nbattery",shape=box,font=helvetica]
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56
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OBO_ADDICTO_0000245 [label="heated\ntobacco-containing\nproduct",shape=box,font=helvetica]
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57
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OBO_ADDICTO_0000865 [label="portable\ncannabis\nvaporiser",shape=box,font=helvetica]
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58
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+
OBO_ADDICTO_0000223 [label="e-cigarette\npart",shape=box,font=helvetica]
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59
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+
OBO_ADDICTO_0000198 [label="chewing\ntobacco",shape=box,font=helvetica]
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60
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+
OBO_ADDICTO_0000302 [label="THC\nvaping\ndevice",shape=box,font=helvetica]
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61
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+
OBO_ADDICTO_0000812 [label="CE4\ne-cigarette\ntank",shape=box,font=helvetica]
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62
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+
OBO_ADDICTO_0000249 [label=iQOS,shape=box,font=helvetica]
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63
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+
OBO_ADDICTO_0000826 [label="nicotine\ncontaining\ne-liquid",shape=box,font=helvetica]
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64
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+
OBO_ADDICTO_0000266 [label="unflavoured\ne-liquid",shape=box,font=helvetica]
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65
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+
OBO_ADDICTO_0000257 [label="nicotine\ndelivery\nproduct",shape=box,font=helvetica]
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66
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+
OBO_ADDICTO_0000624 [label="mint\nflavoured\ne-liquid",shape=box,font=helvetica]
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67
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+
OBO_ADDICTO_0000205 [label="closed\ne-cigarette\nsystem",shape=box,font=helvetica]
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68
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+
OBO_ADDICTO_0000861 [label="fully\nbranded\ncigarette\npack",shape=box,font=helvetica]
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69
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+
OBO_ADDICTO_0000209 [label="disposable\ncigalike\ne-cigarette",shape=box,font=helvetica]
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70
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+
OBO_ADDICTO_0000854 [label="THC\noil",shape=box,font=helvetica]
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71
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+
OBO_ADDICTO_0000300 [label="THC\ncart\nvaping\ndevice",shape=box,font=helvetica]
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72
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+
OBO_ADDICTO_0000232 [label="e-liquid",shape=box,font=helvetica]
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73
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+
OBO_ADDICTO_0000626 [label="sweet\nflavoured\ne-liquid",shape=box,font=helvetica]
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74
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+
OBO_ADDICTO_0000316 [label="vaping\ndevice",shape=box,font=helvetica]
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75
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+
OBO_ADDICTO_0000853 [label="THC\nconcentrates",shape=box,font=helvetica]
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76
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OBO_ADDICTO_0000268 [label="open\ne-cigarette\nsystem",shape=box,font=helvetica]
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77
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+
OBO_ADDICTO_0000199 [label="cigalike\ne-cigarette",shape=box,font=helvetica]
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78
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+
OBO_ADDICTO_0000743 [label=cigarillo,shape=box,font=helvetica]
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79
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+
OBO_ADDICTO_0000222 [label="e-cigarette\nmouthpiece",shape=box,font=helvetica]
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80
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+
OBO_ADDICTO_0000246 [label="heated\ntobacco\nstick",shape=box,font=helvetica]
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81
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+
OBO_ADDICTO_0000292 [label="smokeless\ntobacco-containing\nproduct",shape=box,font=helvetica]
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82
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+
OBO_ADDICTO_0000271 [label="pack\nof\ncigarettes",shape=box,font=helvetica]
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83
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+
OBO_ADDICTO_0000813 [label="THC\nvape\npen",shape=box,font=helvetica]
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84
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+
OBO_ADDICTO_0000538 [label="tobacco-containing\nproduct\npart",shape=box,font=helvetica]
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85
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+
OBO_ADDICTO_0000220 [label="e-cigarette\nmicroprocessor",shape=box,font=helvetica]
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86
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+
OBO_ADDICTO_0000288 [label="shisha\npen",shape=box,font=helvetica]
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87
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+
OBO_ADDICTO_0000225 [label="e-cigarette\nreplaceable\ncoil",shape=box,font=helvetica]
|
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88
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+
OBO_ADDICTO_0000279 [label=product,shape=box,font=helvetica]
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89
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+
OBO_ADDICTO_0000295 [label="oral\nsnuff",shape=box,font=helvetica]
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90
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+
OBO_ADDICTO_0000240 [label="fruit\nflavoured\ne-liquid",shape=box,font=helvetica]
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91
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+
OBO_ADDICTO_0000250 -> OBO_ADDICTO_0000224 [label=subClassOf]
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92
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OBO_ADDICTO_0000232 -> OBO_ADDICTO_0000536 [label=subClassOf]
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93
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OBO_ADDICTO_0000854 -> OBO_ADDICTO_0000536 [label=subClassOf]
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94
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OBO_ADDICTO_0000300 -> OBO_ADDICTO_0000855 [label=subClassOf]
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95
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OBO_ADDICTO_0000743 -> OBO_ADDICTO_0000200 [label=subClassOf]
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96
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OBO_ADDICTO_0000267 -> OBO_ADDICTO_0000301 [label=subClassOf]
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97
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OBO_ADDICTO_0000237 -> OBO_ADDICTO_0000213 [label=subClassOf]
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98
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OBO_ADDICTO_0000190 -> OBO_ADDICTO_0000213 [label=subClassOf]
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99
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+
OBO_ADDICTO_0000282 -> OBO_ADDICTO_0000213 [label=subClassOf]
|
|
100
|
+
OBO_ADDICTO_0000624 -> OBO_ADDICTO_0000239 [label=subClassOf]
|
|
101
|
+
OBO_ADDICTO_0000312 -> OBO_ADDICTO_0000239 [label=subClassOf]
|
|
102
|
+
OBO_ADDICTO_0000240 -> OBO_ADDICTO_0000239 [label=subClassOf]
|
|
103
|
+
OBO_ADDICTO_0000626 -> OBO_ADDICTO_0000239 [label=subClassOf]
|
|
104
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+
OBO_ADDICTO_0000625 -> OBO_ADDICTO_0000239 [label=subClassOf]
|
|
105
|
+
OBO_ADDICTO_0000535 -> OBO_ADDICTO_0000827 [label=subClassOf]
|
|
106
|
+
OBO_ADDICTO_0000317 -> OBO_ADDICTO_0000827 [label=subClassOf]
|
|
107
|
+
OBO_ADDICTO_0000311 -> OBO_ADDICTO_0000303 [label="BFO:0000051"]
|
|
108
|
+
OBO_ADDICTO_0000200 -> OBO_ADDICTO_0000303 [label="BFO:0000051"]
|
|
109
|
+
OBO_ADDICTO_0000201 -> OBO_ADDICTO_0000303 [label="BFO:0000051"]
|
|
110
|
+
OBO_ADDICTO_0000205 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
111
|
+
OBO_ADDICTO_0000287 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
112
|
+
OBO_ADDICTO_0000299 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
113
|
+
OBO_ADDICTO_0000224 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
114
|
+
OBO_ADDICTO_0000221 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
115
|
+
OBO_ADDICTO_0000285 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
116
|
+
OBO_ADDICTO_0000284 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
117
|
+
OBO_ADDICTO_0000315 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
118
|
+
OBO_ADDICTO_0000230 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
119
|
+
OBO_ADDICTO_0000256 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
120
|
+
OBO_ADDICTO_0000268 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
121
|
+
OBO_ADDICTO_0000199 -> OBO_ADDICTO_0000212 [label=subClassOf]
|
|
122
|
+
OBO_ADDICTO_0000200 -> OBO_ADDICTO_0000207 [label=subClassOf]
|
|
123
|
+
OBO_ADDICTO_0000201 -> OBO_ADDICTO_0000207 [label=subClassOf]
|
|
124
|
+
OBO_ADDICTO_0000271 -> OBO_ADDICTO_0000207 [label=subClassOf]
|
|
125
|
+
OBO_ADDICTO_0000316 -> OBO_ADDICTO_0000317 [label="BFO:0000051"]
|
|
126
|
+
OBO_ADDICTO_0000855 -> OBO_ADDICTO_0000317 [label="BFO:0000051"]
|
|
127
|
+
OBO_ADDICTO_0000223 -> OBO_ADDICTO_0000317 [label=subClassOf]
|
|
128
|
+
OBO_ADDICTO_0000245 -> OBO_ADDICTO_0000304 [label=subClassOf]
|
|
129
|
+
OBO_ADDICTO_0000851 -> OBO_ADDICTO_0000201 [label=subClassOf]
|
|
130
|
+
OBO_ADDICTO_0000254 -> OBO_ADDICTO_0000201 [label=subClassOf]
|
|
131
|
+
OBO_ADDICTO_0000753 -> OBO_ADDICTO_0000201 [label=subClassOf]
|
|
132
|
+
OBO_ADDICTO_0000288 -> OBO_ADDICTO_0000231 [label=subClassOf]
|
|
133
|
+
OBO_ADDICTO_0000212 -> OBO_ADDICTO_0000231 [label=subClassOf]
|
|
134
|
+
OBO_ADDICTO_0000207 -> OBO_ADDICTO_0000311 [label=subClassOf]
|
|
135
|
+
OBO_ADDICTO_0000292 -> OBO_ADDICTO_0000311 [label=subClassOf]
|
|
136
|
+
OBO_ADDICTO_0000538 -> OBO_ADDICTO_0000311 [label=subClassOf]
|
|
137
|
+
OBO_ADDICTO_0000246 -> OBO_ADDICTO_0000311 [label=subClassOf]
|
|
138
|
+
OBO_ADDICTO_0000737 -> OBO_ADDICTO_0000311 [label=subClassOf]
|
|
139
|
+
OBO_ADDICTO_0000858 -> OBO_ADDICTO_0000866 [label=subClassOf]
|
|
140
|
+
OBO_ADDICTO_0000882 -> OBO_ADDICTO_0000866 [label=subClassOf]
|
|
141
|
+
OBO_ADDICTO_0000249 -> OBO_ADDICTO_0000245 [label=subClassOf]
|
|
142
|
+
OBO_ADDICTO_0000817 -> OBO_ADDICTO_0000865 [label=subClassOf]
|
|
143
|
+
OBO_ADDICTO_0000852 -> OBO_ADDICTO_0000865 [label=subClassOf]
|
|
144
|
+
OBO_ADDICTO_0000813 -> OBO_ADDICTO_0000865 [label=subClassOf]
|
|
145
|
+
OBO_ADDICTO_0000216 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
146
|
+
OBO_ADDICTO_0000812 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
147
|
+
OBO_ADDICTO_0000214 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
148
|
+
OBO_ADDICTO_0000218 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
149
|
+
OBO_ADDICTO_0000227 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
150
|
+
OBO_ADDICTO_0000213 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
151
|
+
OBO_ADDICTO_0000225 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
152
|
+
OBO_ADDICTO_0000212 -> OBO_ADDICTO_0000223 [label="BFO:0000051"]
|
|
153
|
+
OBO_ADDICTO_0000220 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
154
|
+
OBO_ADDICTO_0000222 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
155
|
+
OBO_ADDICTO_0000296 -> OBO_ADDICTO_0000223 [label=subClassOf]
|
|
156
|
+
OBO_ADDICTO_0000866 -> OBO_ADDICTO_0000302 [label=subClassOf]
|
|
157
|
+
OBO_ADDICTO_0000865 -> OBO_ADDICTO_0000302 [label=subClassOf]
|
|
158
|
+
OBO_ADDICTO_0000855 -> OBO_ADDICTO_0000302 [label=subClassOf]
|
|
159
|
+
OBO_ADDICTO_0000853 -> OBO_ADDICTO_0000302 [label="RO:0000087"]
|
|
160
|
+
OBO_ADDICTO_0000854 -> OBO_ADDICTO_0000302 [label="RO:0000087"]
|
|
161
|
+
OBO_ADDICTO_0000247 -> OBO_ADDICTO_0000826 [label=subClassOf]
|
|
162
|
+
OBO_ADDICTO_0000251 -> OBO_ADDICTO_0000257 [label=subClassOf]
|
|
163
|
+
OBO_ADDICTO_0000210 -> OBO_ADDICTO_0000205 [label=subClassOf]
|
|
164
|
+
OBO_ADDICTO_0000209 -> OBO_ADDICTO_0000205 [label=subClassOf]
|
|
165
|
+
OBO_ADDICTO_0000826 -> OBO_ADDICTO_0000232 [label=subClassOf]
|
|
166
|
+
OBO_ADDICTO_0000239 -> OBO_ADDICTO_0000232 [label=subClassOf]
|
|
167
|
+
OBO_ADDICTO_0000212 -> OBO_ADDICTO_0000232 [label="RO:0001019"]
|
|
168
|
+
OBO_ADDICTO_0000266 -> OBO_ADDICTO_0000232 [label=subClassOf]
|
|
169
|
+
OBO_ADDICTO_0000301 -> OBO_ADDICTO_0000232 [label=subClassOf]
|
|
170
|
+
OBO_ADDICTO_0000231 -> OBO_ADDICTO_0000316 [label=subClassOf]
|
|
171
|
+
OBO_ADDICTO_0000302 -> OBO_ADDICTO_0000316 [label=subClassOf]
|
|
172
|
+
OBO_ADDICTO_0000283 -> OBO_ADDICTO_0000199 [label=subClassOf]
|
|
173
|
+
OBO_ADDICTO_0000245 -> OBO_ADDICTO_0000246 [label="RO:0001019"]
|
|
174
|
+
OBO_ADDICTO_0000295 -> OBO_ADDICTO_0000292 [label=subClassOf]
|
|
175
|
+
OBO_ADDICTO_0000198 -> OBO_ADDICTO_0000292 [label=subClassOf]
|
|
176
|
+
OBO_ADDICTO_0000294 -> OBO_ADDICTO_0000292 [label=subClassOf]
|
|
177
|
+
OBO_ADDICTO_0000272 -> OBO_ADDICTO_0000271 [label="IAO:0000136"]
|
|
178
|
+
OBO_ADDICTO_0000861 -> OBO_ADDICTO_0000271 [label=subClassOf]
|
|
179
|
+
OBO_ADDICTO_0000308 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
180
|
+
OBO_ADDICTO_0000859 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
181
|
+
OBO_ADDICTO_0000536 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
182
|
+
OBO_ADDICTO_0000304 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
183
|
+
OBO_ADDICTO_0000303 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
184
|
+
OBO_ADDICTO_0000316 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
185
|
+
OBO_ADDICTO_0000257 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
186
|
+
OBO_ADDICTO_0000311 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
187
|
+
OBO_ADDICTO_0000827 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
188
|
+
OBO_ADDICTO_0000853 -> OBO_ADDICTO_0000279 [label=subClassOf]
|
|
189
|
+
}
|
|
190
|
+
|
|
@@ -0,0 +1,44 @@
|
|
|
1
|
+
on:
|
|
2
|
+
push:
|
|
3
|
+
branches:
|
|
4
|
+
- master
|
|
5
|
+
paths: {% for source in release_script.external.sources %}
|
|
6
|
+
- "{{ source.file }}"
|
|
7
|
+
{%- endfor %}{% if release_script.external.renameTermFile != None %}
|
|
8
|
+
- "{{ release_script.external.renameTermFile }}"
|
|
9
|
+
{%- endif %}{% if release_script.external.addParentsFile != None %}
|
|
10
|
+
- "{{ release_script.external.addParentsFile }}"
|
|
11
|
+
{%- endif %}
|
|
12
|
+
workflow_dispatch:
|
|
13
|
+
permissions:
|
|
14
|
+
contents: write
|
|
15
|
+
concurrency:
|
|
16
|
+
group: "build_external"
|
|
17
|
+
cancel-in-progress: true
|
|
18
|
+
jobs:
|
|
19
|
+
build:
|
|
20
|
+
runs-on: ubuntu-latest
|
|
21
|
+
name: Build externals
|
|
22
|
+
steps:
|
|
23
|
+
- uses: actions/checkout@v4
|
|
24
|
+
- uses: actions/setup-python@v5
|
|
25
|
+
with:
|
|
26
|
+
python-version: '3.10'
|
|
27
|
+
cache: 'pip' # caching pip dependencies
|
|
28
|
+
- name: Install dependencies
|
|
29
|
+
run: pip install git+https://github.com/ontology-tools/onto-spread-ed.git
|
|
30
|
+
- name: Install ROBOT
|
|
31
|
+
run: |
|
|
32
|
+
curl -o /tmp/robot.jar -L https://github.com/ontodev/robot/releases/download/v1.9.7/robot.jar
|
|
33
|
+
curl -L https://raw.githubusercontent.com/ontodev/robot/master/bin/robot > /tmp/robot
|
|
34
|
+
chmod +x /tmp/robot
|
|
35
|
+
- name: Build externals
|
|
36
|
+
env:
|
|
37
|
+
ROBOT: /tmp/robot
|
|
38
|
+
run: ose externals build -vvvvv
|
|
39
|
+
- uses: EndBug/add-and-commit@v9 # You can change this to use a specific version.
|
|
40
|
+
with:
|
|
41
|
+
add: '.'
|
|
42
|
+
default_author: 'github_actions'
|
|
43
|
+
message: "Built external imports"
|
|
44
|
+
push: true
|
|
@@ -0,0 +1,120 @@
|
|
|
1
|
+
<html>
|
|
2
|
+
<meta charset="utf-8">
|
|
3
|
+
<head>
|
|
4
|
+
<h1 style="text-align: center;">
|
|
5
|
+
External access to GraphViz visualisation for a list of ID's
|
|
6
|
+
</h1>
|
|
7
|
+
</head>
|
|
8
|
+
|
|
9
|
+
<body style = "padding-bottom: 150px">
|
|
10
|
+
<h2>
|
|
11
|
+
What is this?
|
|
12
|
+
</h2>
|
|
13
|
+
<p>
|
|
14
|
+
We created an api which allows you to access the GraphViz visualisation for a list of ID's.
|
|
15
|
+
This api is accessed using a post request with the following parameters:
|
|
16
|
+
<ol>
|
|
17
|
+
<li>
|
|
18
|
+
The list of ID's you want to visualise, separated by spaces or new lines.
|
|
19
|
+
</li>
|
|
20
|
+
<li>
|
|
21
|
+
The Ontology (e.g. "AddictO", "BCIO") the ID's belong to.
|
|
22
|
+
</li>
|
|
23
|
+
</ol>
|
|
24
|
+
</p>
|
|
25
|
+
<p>
|
|
26
|
+
Using this url: https://onto-spread-ed.ew.r.appspot.com/api/openVisualiseAcrossSheets
|
|
27
|
+
</p>
|
|
28
|
+
|
|
29
|
+
<figure>
|
|
30
|
+
<figcaption>Example - JavaScript (XHR):</figcaption>
|
|
31
|
+
<pre>
|
|
32
|
+
<code style="text-align: left;">
|
|
33
|
+
var data = new FormData();
|
|
34
|
+
data.append("idList", "ADDICTO:0000323 ADDICTO:0000322 ADDICTO:0000324 ADDICTO:0000967 ADDICTO:0000325 ADDICTO:0000326");
|
|
35
|
+
data.append("repo", "AddictO");
|
|
36
|
+
|
|
37
|
+
var xhr = new XMLHttpRequest();
|
|
38
|
+
xhr.withCredentials = false;
|
|
39
|
+
|
|
40
|
+
xhr.addEventListener("readystatechange", function() {
|
|
41
|
+
if(this.readyState === 4) {
|
|
42
|
+
//render returned html in the same page:
|
|
43
|
+
var newHTML = document.open("text/html");
|
|
44
|
+
newHTML.write(this.responseText);
|
|
45
|
+
newHTML.close();
|
|
46
|
+
}
|
|
47
|
+
});
|
|
48
|
+
|
|
49
|
+
xhr.open("POST", "https://onto-spread-ed.ew.r.appspot.com/api/openVisualiseAcrossSheets");
|
|
50
|
+
|
|
51
|
+
xhr.send(data);
|
|
52
|
+
</code>
|
|
53
|
+
</pre>
|
|
54
|
+
|
|
55
|
+
</figure>
|
|
56
|
+
|
|
57
|
+
|
|
58
|
+
<h2>
|
|
59
|
+
Postman sample:
|
|
60
|
+
</h2>
|
|
61
|
+
<p>
|
|
62
|
+
We have created a Postman "collection" sample request. When imported into the "Postman" application,
|
|
63
|
+
this can be used to test out the api. Postman can also be used to generate request code in a number of
|
|
64
|
+
languages.
|
|
65
|
+
The postman application can be found <a href="https://www.getpostman.com/">here</a>.
|
|
66
|
+
See <a href="https://learning.postman.com/docs/sending-requests/generate-code-snippets/">this article</a>
|
|
67
|
+
to learn more about how to generate code snippets with Postman.
|
|
68
|
+
</p>
|
|
69
|
+
<h2>
|
|
70
|
+
Try an example of external access to visualisation for ids here:
|
|
71
|
+
</h2>
|
|
72
|
+
<!-- <h2 style="color: green;">
|
|
73
|
+
onto-spread-ed
|
|
74
|
+
</h2> -->
|
|
75
|
+
<div style="text-align: center;">
|
|
76
|
+
<p>
|
|
77
|
+
Click on the button to create
|
|
78
|
+
a form dynamically, then press "Submit" to access the visualisation for the selected ids.
|
|
79
|
+
</p>
|
|
80
|
+
|
|
81
|
+
<button onClick="ID_Fun()">
|
|
82
|
+
click here
|
|
83
|
+
</button>
|
|
84
|
+
</div>
|
|
85
|
+
<script>
|
|
86
|
+
function ID_Fun() {
|
|
87
|
+
|
|
88
|
+
// Create a form dynamically
|
|
89
|
+
form = document.createElement("FORM");
|
|
90
|
+
form.name = 'form';
|
|
91
|
+
form.method = 'POST';
|
|
92
|
+
form.action = 'https://onto-spread-ed.ew.r.appspot.com/api/openVisualiseAcrossSheets';
|
|
93
|
+
|
|
94
|
+
// form.action = 'http://me.mydomain.com:8080/api/openVisualiseAcrossSheets';
|
|
95
|
+
var input = document.createElement('input');
|
|
96
|
+
input.name = "idList";
|
|
97
|
+
input.value = "ADDICTO:0000323 ADDICTO:0000322 ADDICTO:0000324 ADDICTO:0000967 ADDICTO:0000325 ADDICTO:0000326";
|
|
98
|
+
form.appendChild(input);
|
|
99
|
+
|
|
100
|
+
var input2 = document.createElement('input');
|
|
101
|
+
input2.name = "repo";
|
|
102
|
+
input2.value = "AddictO";
|
|
103
|
+
form.appendChild(input2);
|
|
104
|
+
|
|
105
|
+
// Create a submit button
|
|
106
|
+
var s = document.createElement("input");
|
|
107
|
+
s.setAttribute("type", "submit");
|
|
108
|
+
s.setAttribute("value", "Submit");
|
|
109
|
+
// Append the button to the form
|
|
110
|
+
form.append(s);
|
|
111
|
+
// Append the form to the page
|
|
112
|
+
document.body.appendChild(form);
|
|
113
|
+
}
|
|
114
|
+
</script>
|
|
115
|
+
</body>
|
|
116
|
+
|
|
117
|
+
|
|
118
|
+
|
|
119
|
+
|
|
120
|
+
</html>
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
{% extends "base.html" %}
|
|
2
|
+
{% block title %}{{ config['APP_TITLE'] }}{% endblock %}
|
|
3
|
+
{% block head %}
|
|
4
|
+
{{ super() }}
|
|
5
|
+
{% endblock %}
|
|
6
|
+
{% block content %}
|
|
7
|
+
<div id="vue-app-dashboard">
|
|
8
|
+
</div>
|
|
9
|
+
<script>
|
|
10
|
+
var URLS = {
|
|
11
|
+
prefix: '{{config["URL_PREFIX"]}}',
|
|
12
|
+
release: '{{ url_for('admin.release') }}',
|
|
13
|
+
rebuildIndex: '{{ url_for('admin.rebuild_index') }}',
|
|
14
|
+
settings: '{{ url_for("admin.settings") }}'
|
|
15
|
+
}
|
|
16
|
+
</script>
|
|
17
|
+
<script type="module" src="{{ url_for('static', filename='js/admin.js') }}"></script>
|
|
18
|
+
{% endblock %}
|
|
@@ -0,0 +1,85 @@
|
|
|
1
|
+
{% extends "base.html" %}
|
|
2
|
+
{% block title %}{{ config['APP_TITLE'] }}{% endblock %}
|
|
3
|
+
{% block head %}
|
|
4
|
+
{{ super() }}
|
|
5
|
+
{% endblock %}
|
|
6
|
+
{% block content %}
|
|
7
|
+
|
|
8
|
+
<h1>Rebuild the index</h1>
|
|
9
|
+
<p>
|
|
10
|
+
Currently, the index has the following statistics:
|
|
11
|
+
</p>
|
|
12
|
+
|
|
13
|
+
<table class="table">
|
|
14
|
+
<thead>
|
|
15
|
+
<tr>
|
|
16
|
+
<th scope="col">Name</th>
|
|
17
|
+
<th scope="col">Value</th>
|
|
18
|
+
</tr>
|
|
19
|
+
</thead>
|
|
20
|
+
<tbody>
|
|
21
|
+
{% for name, value in index_stats.items() %}
|
|
22
|
+
{% if value is iterable and value is not string %}
|
|
23
|
+
|
|
24
|
+
<tr>
|
|
25
|
+
<td>{{ name.replace("_", " ") | capitalize }}</td>
|
|
26
|
+
<td>{{ value | first }}</td>
|
|
27
|
+
</tr>
|
|
28
|
+
{% for e in value[1:] %}
|
|
29
|
+
<tr>
|
|
30
|
+
<td></td>
|
|
31
|
+
<td>{{ e }}</td>
|
|
32
|
+
</tr>
|
|
33
|
+
{% endfor %}
|
|
34
|
+
{% else %}
|
|
35
|
+
<tr>
|
|
36
|
+
<td>{{ name.replace("_", " ") | capitalize }}</td>
|
|
37
|
+
<td>{{ value }}</td>
|
|
38
|
+
</tr>
|
|
39
|
+
{% endif %}
|
|
40
|
+
{% endfor %}
|
|
41
|
+
|
|
42
|
+
</tbody>
|
|
43
|
+
</table>
|
|
44
|
+
|
|
45
|
+
<button type="button" id="btn-rebuild-index" class="btn btn-danger">Rebuild the index</button>
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
<script type="application/javascript">
|
|
49
|
+
var URL_PREFIX = '{{config["URL_PREFIX"]}}';
|
|
50
|
+
const btn_rebuild = $("#btn-rebuild-index")
|
|
51
|
+
btn_rebuild.on("click", async (event) => {
|
|
52
|
+
let dialog = bootbox.dialog({
|
|
53
|
+
title: "Rebuilding...",
|
|
54
|
+
message: '<p class="text-center mb-0"><i class="fas fa-spin fa-cog"></i><br> This might take while. Please do not close the window or tab!</p>',
|
|
55
|
+
closeButton: true
|
|
56
|
+
});
|
|
57
|
+
let dialogShown$ = new Promise((resolve, _) => {
|
|
58
|
+
dialog.on('shown.bs.modal', () => resolve())
|
|
59
|
+
});
|
|
60
|
+
|
|
61
|
+
try {
|
|
62
|
+
const result = await fetch(URL_PREFIX + "/admin/rebuild-index", {
|
|
63
|
+
method: "POST"
|
|
64
|
+
})
|
|
65
|
+
|
|
66
|
+
let sheets = await result.json();
|
|
67
|
+
bootbox.dialog({
|
|
68
|
+
title: "Index rebuild",
|
|
69
|
+
message: `<p>Files included in the index:</p><ul>${sheets.map(x => "<li>" + x + "</li>").join("\n")}</ul>`,
|
|
70
|
+
closeButton: true,
|
|
71
|
+
size: 'large',
|
|
72
|
+
onEscape: true,
|
|
73
|
+
backdrop: true,
|
|
74
|
+
})
|
|
75
|
+
|
|
76
|
+
} catch (e) {
|
|
77
|
+
bootbox.alert("Something went wrong");
|
|
78
|
+
console.error(e)
|
|
79
|
+
}
|
|
80
|
+
|
|
81
|
+
await dialogShown$;
|
|
82
|
+
dialog.modal("hide")
|
|
83
|
+
})
|
|
84
|
+
</script>
|
|
85
|
+
{% endblock %}
|
|
@@ -0,0 +1,46 @@
|
|
|
1
|
+
{% extends "base.html" %}
|
|
2
|
+
{% block title %}{{ config['APP_TITLE'] }}{% endblock %}
|
|
3
|
+
{% block head %}
|
|
4
|
+
{{ super() }}
|
|
5
|
+
|
|
6
|
+
<link rel="stylesheet" href="{{ url_for('static', filename="js/assets/release.css") }}">
|
|
7
|
+
|
|
8
|
+
{% endblock %}
|
|
9
|
+
{% block content %}
|
|
10
|
+
{% if repo == None %}
|
|
11
|
+
<div class="release">
|
|
12
|
+
|
|
13
|
+
|
|
14
|
+
<div class="row align-stretch" style="max-width: 1080px; margin: 0 auto">
|
|
15
|
+
|
|
16
|
+
<h4>Which repository should be released?</h4>
|
|
17
|
+
{% for short, config in repos.items() %}
|
|
18
|
+
<div class="col-sm-6 col-md-4 col-lg-3 m-2">
|
|
19
|
+
|
|
20
|
+
<a class="card bg-light"
|
|
21
|
+
href="{{ url_for('admin.release', repo=short) }}"
|
|
22
|
+
style="cursor: pointer; height: 100%; text-decoration: none;; border-width: 2px 2px 4px 2px">
|
|
23
|
+
<div class="section p-2 text-center fs-2" style="">
|
|
24
|
+
{{ short }}
|
|
25
|
+
</div>
|
|
26
|
+
<div class="card-body text-center">
|
|
27
|
+
{{ config.full_name }}
|
|
28
|
+
</div>
|
|
29
|
+
</a>
|
|
30
|
+
</div>
|
|
31
|
+
{% endfor %}
|
|
32
|
+
</div>
|
|
33
|
+
</div>
|
|
34
|
+
|
|
35
|
+
{% else %}
|
|
36
|
+
<div class="release" id="vue-app-release">
|
|
37
|
+
</div>
|
|
38
|
+
<script>
|
|
39
|
+
var SERVER_DATA={repo: "{{repo}}" }
|
|
40
|
+
var URLS={prefix: '{{config["URL_PREFIX"]}}' }
|
|
41
|
+
</script>
|
|
42
|
+
<script type="module" src="{{url_for('static', filename='js/release.js')}}"></script>
|
|
43
|
+
{% endif %}
|
|
44
|
+
{% endblock %}
|
|
45
|
+
|
|
46
|
+
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
{% extends "base.html" %}
|
|
2
|
+
{% block title %}{{ config['APP_TITLE'] }}{% endblock %}
|
|
3
|
+
{% block head %}
|
|
4
|
+
{{ super() }}
|
|
5
|
+
|
|
6
|
+
<link rel="stylesheet" href="{{ url_for('static', filename="js/assets/settings.css") }}">
|
|
7
|
+
{% endblock %}
|
|
8
|
+
{% block content %}
|
|
9
|
+
<div id="vue-app-settings">
|
|
10
|
+
</div>
|
|
11
|
+
<script>
|
|
12
|
+
var URLS = {
|
|
13
|
+
prefix: '{{config["URL_PREFIX"]}}'
|
|
14
|
+
}
|
|
15
|
+
var SETTINGS = {
|
|
16
|
+
'repositories': {{ config_service.loaded_repositories() | tojson | safe }},
|
|
17
|
+
'startup_repositories': {{ config_service.startup_repositories() | tojson | safe }},
|
|
18
|
+
'changing_startup_allowed': {{ config_service.changing_startup_allowed | tojson | safe }},
|
|
19
|
+
'loading_new_allowed': {{ config_service.loading_new_allowed | tojson | safe }}
|
|
20
|
+
}
|
|
21
|
+
</script>
|
|
22
|
+
<script type="module" src="{{ url_for('static', filename='js/settings.js') }}"></script>
|
|
23
|
+
{% endblock %}
|