ose-app 0.2.5__py3-none-any.whl → 0.3.1__py3-none-any.whl

ose_app/__init__.py

@@ -5,6 +5,13 @@ This package provides the web interface for the OntoSpreadEd
 ontology spreadsheet editor.
 """
 
+from importlib.metadata import version, PackageNotFoundError
+
+try:
+    __version__ = version("ose-app")
+except PackageNotFoundError:
+    __version__ = "unknown"
+
 # Do the custom json serialization
 import json
 import logging
@@ -68,6 +75,9 @@ def load_config(app: Flask, config_filename):
     # add aliases
     app.config["SQLALCHEMY_DATABASE_URI"] = app.config.get("DATABASE_URI")
 
+    # set version
+    app.config["APP_VERSION"] = __version__
+
     # set log level
     level = app.config.get("LOG_LEVEL", "WARNING")
     level = level.upper() if isinstance(level, str) else "WARNING"
@@ -123,6 +133,7 @@ def create_app(config_filename=None):
     # CLI is optional - only initialize if ose-cli is installed
     try:
         import ose_cli
+
         ose_cli.init_app(app, injector.injector)
     except ImportError:
         app.logger.debug("ose-cli not installed, CLI commands not available")

ose_app/static/js/admin.js

@@ -1,2 +1 @@
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-//# sourceMappingURL=admin.js.map
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ose_app/static/js/assets/release.css

@@ -1 +1 @@
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+.release-file-settings[data-v-7cac764c]{display:grid;grid-template-columns:1fr auto;grid-gap:0 16px}.release-file-settings>h6[data-v-7cac764c],.release-file-settings>p[data-v-7cac764c]{grid-column:1/3}.release-file-settings>.input-group[data-v-7cac764c]{grid-column:1}.release-file-settings>label[data-v-7cac764c]{grid-column:1}.release-file-settings>.btn[data-v-7cac764c]{width:fit-content;justify-self:start;grid-column:1}.files[data-v-7cac764c]{display:flex;flex-direction:column;gap:14px}.btn.add-file[data-v-7cac764c]{width:fit-content}.header[data-v-7cac764c]{display:flex;gap:14px}.header .title[data-v-7cac764c]{font-size:large}.header span[data-v-7cac764c]{flex-grow:1}.header i[data-v-7cac764c]{align-self:center;transition:transform 1s}.btn.add-step[data-v-7cac764c]{width:100%;border-style:dashed}.loading[data-v-16ff9444]{z-index:1;background:#0006;position:fixed;top:0;left:0;width:100vw;height:100vh;display:grid}.loading .inner[data-v-16ff9444]{margin:auto;justify-self:center;align-self:center;display:flex;flex-direction:column;text-align:center;gap:14px}.loading .inner .spinner-border[data-v-16ff9444]{border-width:10px}#release-core .sidebar .btn[data-v-16ff9444]{text-align:start!important}

ose_app/static/js/chunks/BToastOrchestrator.vue_vue_type_style_index_0_lang-CgGO-ddH-VRzWJdDL.js

@@ -0,0 +1 @@
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-import{d as r,c as n,a as i,e as s,u as l,v as t,r as c}from"./filter-Bx-PU1OL.js";import{_ as p}from"./_plugin-vue_export-helper-DlAUqK2U.js";const b={class:"collapsible-card"},u=["data-bs-target"],_={class:"title"},f=["id"],v=r({__name:"CollapsibleCard",setup(m){const d=c(null);let a=Math.round(Math.random()*1e4);return(e,o)=>(i(),n("div",b,[s("div",{class:"header collapsed","data-bs-toggle":"collapse","data-bs-target":"#body-"+l(a)},[s("div",_,[t(e.$slots,"title",{},void 0,!0)]),o[0]||(o[0]=s("span",null,null,-1)),t(e.$slots,"buttons",{},void 0,!0),o[1]||(o[1]=s("i",{class:"fa fa-chevron-up"},null,-1))],8,u),s("div",{class:"body collapse",id:"body-"+l(a),ref_key:"body",ref:d},[t(e.$slots,"body",{},void 0,!0)],8,f)]))}}),h=p(v,[["__scopeId","data-v-25b984b1"]]);export{h as C};
-//# sourceMappingURL=CollapsibleCard-DgwkQKDg.js.map
+import{d as r,c as n,a as i,e as s,u as l,v as t,r as c}from"./filter-Xg_JD3wD.js";import{_ as p}from"./_plugin-vue_export-helper-DlAUqK2U.js";const b={class:"collapsible-card"},u=["data-bs-target"],_={class:"title"},f=["id"],v=r({__name:"CollapsibleCard",setup(m){const d=c(null);let a=Math.round(Math.random()*1e4);return(e,o)=>(i(),n("div",b,[s("div",{class:"header collapsed","data-bs-toggle":"collapse","data-bs-target":"#body-"+l(a)},[s("div",_,[t(e.$slots,"title",{},void 0,!0)]),o[0]||(o[0]=s("span",null,null,-1)),t(e.$slots,"buttons",{},void 0,!0),o[1]||(o[1]=s("i",{class:"fa fa-chevron-up"},null,-1))],8,u),s("div",{class:"body collapse",id:"body-"+l(a),ref_key:"body",ref:d},[t(e.$slots,"body",{},void 0,!0)],8,f)]))}}),h=p(v,[["__scopeId","data-v-25b984b1"]]);export{h as C};

ose_app/static/js/chunks/{Diagnostic.vue_vue_type_script_setup_true_lang-CBzsmnqW.js → Diagnostic.vue_vue_type_script_setup_true_lang-lJxhRaQM.js}

@@ -1,4 +1,4 @@
-import{d as c,c as i,f as l,a as n,F as d,e as r,l as m,v as $,h as g,t as h}from"./filter-CiYqP1_r.js";const a={"unknown-parent":{severity:"error",title:e=>"Unknown parent",message:e=>`The parent <code>${e.parent.label}</code> of <code>${(e.term??e.relation).label}</code>
+import{d as c,c as i,f as l,a as n,F as d,e as r,l as m,v as $,h as g,t as h}from"./filter-Xg_JD3wD.js";const a={"unknown-parent":{severity:"error",title:e=>"Unknown parent",message:e=>`The parent <code>${e.parent.label}</code> of <code>${(e.term??e.relation).label}</code>
               (<code>${(e.term??e.relation).id||"no id"}</code>) is not known.`},"missing-parent":{severity:"error",title:e=>"Missing parent",message:e=>`The parent <code>${e.parent.label}</code> (<code>${e.parent.id}</code>) of
               <code>${e.term.label}</code>
               (<code>${e.term.id||"no id"}</code>) is neither defined in the Excel files or imported.
@@ -40,4 +40,3 @@ import{d as c,c as i,f as l,a as n,F as d,e as r,l as m,v as $,h as g,t as h}fro
               "External" but is not included in the externally imported terms.`+(e.term.id?` Does the term still exist in
                 ${e.term.id.split(":")[0]}?`:"")},"inconsistent-import":{severity:"warning",title:e=>"Inconsistent import",message:e=>`The term <code>${e.term.label}</code> (<code>${e.term.id??"no id"}</code>) has the curation
               status "External" but its `+(e.term.id!==e.imported_term.id?`ID (<code>${e.imported_term.id}</code>)`:`label (<code>${e.imported_term.label}</code>)`)+" differs."}},p=["innerHTML"],u=["innerHTML"],b={key:0},f={key:1},v=["innerHTML"],w=c({__name:"Diagnostic",props:{diagnostic:{},severity:{default:null},format:{default:"long"}},setup(e){const o=e,t=m(()=>({severity:a[o.diagnostic.type].severity,title:a[o.diagnostic.type].title(o.diagnostic),message:a[o.diagnostic.type].message(o.diagnostic)}));return(s,y)=>e.format==="long"?(n(),i(d,{key:0},[r("h5",{innerHTML:t.value.title},null,8,p),r("p",{innerHTML:t.value.message},null,8,u),s.$slots.default?(n(),i("p",b,[$(s.$slots,"default")])):l("",!0)],64)):e.format==="inline"?(n(),i("p",f,[r("span",{innerHTML:t.value.message},null,8,v)])):e.format==="text"?(n(),i(d,{key:2},[g(h(t.value.message.replace(/(<([^>]+)>)/ig,"")),1)],64)):l("",!0)}});export{a as D,w as _};
-//# sourceMappingURL=Diagnostic.vue_vue_type_script_setup_true_lang-CBzsmnqW.js.map

ose_app/static/js/chunks/_plugin-vue_export-helper-DlAUqK2U.js

@@ -1,2 +1 @@
 const s=(t,r)=>{const o=t.__vccOpts||t;for(const[c,e]of r)o[c]=e;return o};export{s as _};
-//# sourceMappingURL=_plugin-vue_export-helper-DlAUqK2U.js.map

ose_app/static/js/chunks/bootbox-D3SJ_Fwv.js

@@ -1,2 +1 @@
 function e(l){return new Promise(o=>{bootbox.prompt({...l,callback(n){o(n??null)}})})}function t(l,o="hide"){return new Promise(n=>{let i=null;bootbox.alert({...l,onHidden(){o==="hidden"&&n(i)},callback(a){o==="hidden"?i=a??null:n(a??null)}})})}function c(l){return new Promise(o=>{bootbox.confirm({...l,callback(n){o(n)}})})}export{t as a,c,e as p};
-//# sourceMappingURL=bootbox-D3SJ_Fwv.js.map

ose_app/static/js/chunks/constants-DiFa8GuF.js

@@ -0,0 +1 @@
+class c{_edges;_nodes;_successors;_predecessors;get nodes(){return Array.from(this._nodes.values())}get edges(){return this._edges}get roots(){return this.nodes.filter(s=>this.predecessors(s.id).length===0)}get leaves(){return this.nodes.filter(s=>this.successors(s.id).length===0)}constructor(s=[],e=[]){this._nodes=new Map,this._edges=[],this._successors=new Map,this._predecessors=new Map;for(const t of s)this.addNode(t);for(const t of e)this.addEdge(t)}outgoingEdges(s){return this._edges.filter(e=>e.source===s)}incomingEdges(s){return this._edges.filter(e=>e.target===s)}node(s){return this._nodes.get(s)}addNode(s){this._nodes.set(s.id,s)}removeNode(s){const e=typeof s=="string"?s:s.id;this._nodes.delete(e),this._edges=this._edges.filter(t=>t.source!==e&&t.target!==e),this._successors.delete(e),this._predecessors.delete(e);for(const[t,r]of this._successors)r.delete(e);for(const[t,r]of this._predecessors)r.delete(e)}removeEdge(s){this._edges=this._edges.filter(e=>!(e.source===s.source&&e.target===s.target&&(!s.type||e.type===s.type))),this._successors.get(s.source)?.delete(s.target),this._predecessors.get(s.target)?.delete(s.source)}addEdge(s){this._edges.push(s);const e=this._nodes.has(s.source)===!1,t=this._nodes.has(s.target)===!1;e&&console.warn(`Trying to add edge '[${s.label||s.type}] ${s.source} -> ${s.target}' with unknown source node id '${s.source}'`),t&&console.warn(`Trying to add edge '[${s.label||s.type}] ${s.source} -> ${s.target}' with unknown target node id '${s.target}'`),!(e||t)&&(this._successors.has(s.source)||this._successors.set(s.source,new Set),this._successors.get(s.source).add(s.target),this._predecessors.has(s.target)||this._predecessors.set(s.target,new Set),this._predecessors.get(s.target).add(s.source))}successors(s){const e=typeof s=="string"?s:s.id;return Array.from(this._successors.get(e)||[]).map(t=>this._nodes.get(t))}predecessors(s){const e=typeof s=="string"?s:s.id;return Array.from(this._predecessors.get(e)||[]).map(t=>{const r=this._nodes.get(t);return r||console.error(`Inconsistent graph: predecessor node of '${e}' not found with id ${t}`),r}).filter(t=>!!t)}reachable(s){const e=new Set,t=[s];for(;t.length>0;){const r=t.pop();if(!e.has(r)){e.add(r);const i=this.successors(r);for(const n of i)e.has(n.id)||t.push(n.id)}}return e}backwardReachable(s){const e=new Set,t=[s];for(;t.length>0;){const r=t.pop();if(!e.has(r)){e.add(r);const i=this.predecessors(r);for(const n of i)e.has(n.id)||t.push(n.id)}}return e}clone(){return new c(this.nodes.map(s=>({...s})),this.edges.map(s=>({...s})))}}function a(o){return o&&typeof o=="object"&&"Label"in o&&typeof o.Label=="string"&&"ID"in o&&typeof o.ID=="string"&&"Parent"in o&&typeof o.Parent=="string"}const d={DISCUSSED:"Discussed",READY:"Ready",PROPOSED:"Proposed",TO_BE_DISCUSSED:"To be discussed",IN_DISCUSSION:"In discussion",PUBLISHED:"Published",OBSOLETE:"Obsolete",EXTERNAL:"External",PRE_PROPOSED:"Pre-proposed"},h={CURATION_STATUS:"Curation status",TO_BE_REVIEWED_BY:"To be reviewed by",CURATOR:"Curator",ID:"ID",E_CIGO:"E-CigO",FUZZY_SET:"Fuzzy set",RELATIONSHIP_TYPE:"Relationship type",LABEL:"Label"};export{h as C,c as G,d as a,a as i};