orca-sdk 0.1.1__py3-none-any.whl → 0.1.3__py3-none-any.whl

orca_sdk/__init__.py

@@ -3,8 +3,8 @@ OrcaSDK is a Python library for building and using retrieval augmented models in
 """
 
 from ._utils.common import UNSET, CreateMode, DropMode
-from ._utils.task import TaskStatus
-from .classification_model import ClassificationModel
+from .classification_model import ClassificationMetrics, ClassificationModel
+from .client import OrcaClient
 from .credentials import OrcaCredentials
 from .datasource import Datasource
 from .embedding_model import (
@@ -12,13 +12,19 @@ from .embedding_model import (
     PretrainedEmbeddingModel,
     PretrainedEmbeddingModelName,
 )
+from .job import Job, Status
 from .memoryset import (
+    CascadingEditSuggestion,
     FilterItemTuple,
     LabeledMemory,
     LabeledMemoryLookup,
     LabeledMemoryset,
+    ScoredMemory,
+    ScoredMemoryLookup,
+    ScoredMemoryset,
 )
-from .telemetry import LabelPrediction
+from .regression_model import RegressionModel
+from .telemetry import ClassificationPrediction, FeedbackCategory, RegressionPrediction
 
 # only specify things that should show up on the root page of the reference docs because they are in private modules
-__all__ = ["TaskStatus", "UNSET", "CreateMode", "DropMode"]
+__all__ = ["UNSET", "CreateMode", "DropMode"]

orca_sdk/_shared/__init__.py

@@ -0,0 +1,10 @@
+from .metrics import (
+    ClassificationMetrics,
+    PRCurve,
+    RegressionMetrics,
+    ROCCurve,
+    calculate_classification_metrics,
+    calculate_pr_curve,
+    calculate_regression_metrics,
+    calculate_roc_curve,
+)

orca_sdk/_shared/metrics.py

@@ -0,0 +1,393 @@
+"""
+This module contains metrics for usage with the Hugging Face Trainer.
+
+IMPORTANT:
+- This is a shared file between OrcaLib and the OrcaSDK.
+- Please ensure that it does not have any dependencies on the OrcaLib code.
+- Make sure to edit this file in orcalib/shared and NOT in orca_sdk, since it will be overwritten there.
+
+"""
+
+from dataclasses import dataclass
+from typing import Any, Literal, TypedDict, cast
+
+import numpy as np
+import sklearn.metrics
+from numpy.typing import NDArray
+
+
+# we don't want to depend on scipy or torch in orca_sdk
+def softmax(logits: np.ndarray, axis: int = -1) -> np.ndarray:
+    shifted = logits - np.max(logits, axis=axis, keepdims=True)
+    exps = np.exp(shifted)
+    return exps / np.sum(exps, axis=axis, keepdims=True)
+
+
+# We don't want to depend on transformers just for the eval_pred type in orca_sdk
+def transform_eval_pred(eval_pred: Any) -> tuple[NDArray, NDArray[np.float32]]:
+    # convert results from Trainer compute_metrics param for use in calculate_classification_metrics
+    logits, references = eval_pred  # transformers.trainer_utils.EvalPrediction
+    if isinstance(logits, tuple):
+        logits = logits[0]
+    if not isinstance(logits, np.ndarray):
+        raise ValueError("Logits must be a numpy array")
+    if not isinstance(references, np.ndarray):
+        raise ValueError(
+            "Multiple label columns found, use the `label_names` training argument to specify which one to use"
+        )
+
+    return (references, logits)
+
+
+class PRCurve(TypedDict):
+    thresholds: list[float]
+    precisions: list[float]
+    recalls: list[float]
+
+
+def calculate_pr_curve(
+    references: NDArray[np.int64],
+    probabilities: NDArray[np.float32],
+    max_length: int = 100,
+) -> PRCurve:
+    if probabilities.ndim == 1:
+        probabilities_slice = probabilities
+    elif probabilities.ndim == 2:
+        probabilities_slice = probabilities[:, 1]
+    else:
+        raise ValueError("Probabilities must be 1 or 2 dimensional")
+
+    if len(probabilities_slice) != len(references):
+        raise ValueError("Probabilities and references must have the same length")
+
+    precisions, recalls, thresholds = sklearn.metrics.precision_recall_curve(references, probabilities_slice)
+
+    # Convert all arrays to float32 immediately after getting them
+    precisions = precisions.astype(np.float32)
+    recalls = recalls.astype(np.float32)
+    thresholds = thresholds.astype(np.float32)
+
+    # Concatenate with 0 to include the lowest threshold
+    thresholds = np.concatenate(([0], thresholds))
+
+    # Sort by threshold
+    sorted_indices = np.argsort(thresholds)
+    thresholds = thresholds[sorted_indices]
+    precisions = precisions[sorted_indices]
+    recalls = recalls[sorted_indices]
+
+    if len(precisions) > max_length:
+        new_thresholds = np.linspace(0, 1, max_length, dtype=np.float32)
+        new_precisions = np.interp(new_thresholds, thresholds, precisions)
+        new_recalls = np.interp(new_thresholds, thresholds, recalls)
+        thresholds = new_thresholds
+        precisions = new_precisions
+        recalls = new_recalls
+
+    return PRCurve(
+        thresholds=cast(list[float], thresholds.tolist()),
+        precisions=cast(list[float], precisions.tolist()),
+        recalls=cast(list[float], recalls.tolist()),
+    )
+
+
+class ROCCurve(TypedDict):
+    thresholds: list[float]
+    false_positive_rates: list[float]
+    true_positive_rates: list[float]
+
+
+def calculate_roc_curve(
+    references: NDArray[np.int64],
+    probabilities: NDArray[np.float32],
+    max_length: int = 100,
+) -> ROCCurve:
+    if probabilities.ndim == 1:
+        probabilities_slice = probabilities
+    elif probabilities.ndim == 2:
+        probabilities_slice = probabilities[:, 1]
+    else:
+        raise ValueError("Probabilities must be 1 or 2 dimensional")
+
+    if len(probabilities_slice) != len(references):
+        raise ValueError("Probabilities and references must have the same length")
+
+    # Convert probabilities to float32 before calling sklearn_roc_curve
+    probabilities_slice = probabilities_slice.astype(np.float32)
+    fpr, tpr, thresholds = sklearn.metrics.roc_curve(references, probabilities_slice)
+
+    # Convert all arrays to float32 immediately after getting them
+    fpr = fpr.astype(np.float32)
+    tpr = tpr.astype(np.float32)
+    thresholds = thresholds.astype(np.float32)
+
+    # We set the first threshold to 1.0 instead of inf for reasonable values in interpolation
+    thresholds[0] = 1.0
+
+    # Sort by threshold
+    sorted_indices = np.argsort(thresholds)
+    thresholds = thresholds[sorted_indices]
+    fpr = fpr[sorted_indices]
+    tpr = tpr[sorted_indices]
+
+    if len(fpr) > max_length:
+        new_thresholds = np.linspace(0, 1, max_length, dtype=np.float32)
+        new_fpr = np.interp(new_thresholds, thresholds, fpr)
+        new_tpr = np.interp(new_thresholds, thresholds, tpr)
+        thresholds = new_thresholds
+        fpr = new_fpr
+        tpr = new_tpr
+
+    return ROCCurve(
+        false_positive_rates=cast(list[float], fpr.tolist()),
+        true_positive_rates=cast(list[float], tpr.tolist()),
+        thresholds=cast(list[float], thresholds.tolist()),
+    )
+
+
+@dataclass
+class ClassificationMetrics:
+    coverage: float
+    """Percentage of predictions that are not none"""
+
+    f1_score: float
+    """F1 score of the predictions"""
+
+    accuracy: float
+    """Accuracy of the predictions"""
+
+    loss: float | None
+    """Cross-entropy loss of the logits"""
+
+    anomaly_score_mean: float | None = None
+    """Mean of anomaly scores across the dataset"""
+
+    anomaly_score_median: float | None = None
+    """Median of anomaly scores across the dataset"""
+
+    anomaly_score_variance: float | None = None
+    """Variance of anomaly scores across the dataset"""
+
+    roc_auc: float | None = None
+    """Receiver operating characteristic area under the curve"""
+
+    pr_auc: float | None = None
+    """Average precision (area under the curve of the precision-recall curve)"""
+
+    pr_curve: PRCurve | None = None
+    """Precision-recall curve"""
+
+    roc_curve: ROCCurve | None = None
+    """Receiver operating characteristic curve"""
+
+    def __repr__(self) -> str:
+        return (
+            "ClassificationMetrics({\n"
+            + f"    accuracy: {self.accuracy:.4f},\n"
+            + f"    f1_score: {self.f1_score:.4f},\n"
+            + (f"    roc_auc: {self.roc_auc:.4f},\n" if self.roc_auc else "")
+            + (f"    pr_auc: {self.pr_auc:.4f},\n" if self.pr_auc else "")
+            + (
+                f"    anomaly_score: {self.anomaly_score_mean:.4f} ± {self.anomaly_score_variance:.4f},\n"
+                if self.anomaly_score_mean
+                else ""
+            )
+            + "})"
+        )
+
+
+def calculate_classification_metrics(
+    expected_labels: list[int] | NDArray[np.int64],
+    logits: list[list[float]] | list[NDArray[np.float32]] | NDArray[np.float32],
+    anomaly_scores: list[float] | None = None,
+    average: Literal["micro", "macro", "weighted", "binary"] | None = None,
+    multi_class: Literal["ovr", "ovo"] = "ovr",
+    include_curves: bool = False,
+) -> ClassificationMetrics:
+    references = np.array(expected_labels)
+
+    logits = np.array(logits)
+    if logits.ndim == 1:
+        if (logits > 1).any() or (logits < 0).any():
+            raise ValueError("Logits must be between 0 and 1 for binary classification")
+        # convert 1D probabilities (binary) to 2D logits
+        logits = np.column_stack([1 - logits, logits])
+        probabilities = logits  # no need to convert to probabilities
+    elif logits.ndim == 2:
+        if logits.shape[1] < 2:
+            raise ValueError("Use a different metric function for regression tasks")
+        if not (logits > 0).all():
+            # convert logits to probabilities with softmax if necessary
+            probabilities = softmax(logits)
+        elif not np.allclose(logits.sum(-1, keepdims=True), 1.0):
+            # convert logits to probabilities through normalization if necessary
+            probabilities = logits / logits.sum(-1, keepdims=True)
+        else:
+            probabilities = logits
+    else:
+        raise ValueError("Logits must be 1 or 2 dimensional")
+
+    predictions = np.argmax(probabilities, axis=-1)
+    predictions[np.isnan(probabilities).all(axis=-1)] = -1  # set predictions to -1 for all nan logits
+
+    num_classes_references = len(set(references))
+    num_classes_predictions = len(set(predictions))
+    num_none_predictions = np.isnan(probabilities).all(axis=-1).sum()
+    coverage = 1 - num_none_predictions / len(probabilities)
+
+    if average is None:
+        average = "binary" if num_classes_references == 2 and num_none_predictions == 0 else "weighted"
+
+    anomaly_score_mean = float(np.mean(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_median = float(np.median(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_variance = float(np.var(anomaly_scores)) if anomaly_scores else None
+
+    accuracy = sklearn.metrics.accuracy_score(references, predictions)
+    f1 = sklearn.metrics.f1_score(references, predictions, average=average)
+    # Ensure sklearn sees the full class set corresponding to probability columns
+    # to avoid errors when y_true does not contain all classes.
+    loss = (
+        sklearn.metrics.log_loss(
+            references,
+            probabilities,
+            labels=list(range(probabilities.shape[1])),
+        )
+        if num_none_predictions == 0
+        else None
+    )
+
+    if num_classes_references == num_classes_predictions and num_none_predictions == 0:
+        # special case for binary classification: https://github.com/scikit-learn/scikit-learn/issues/20186
+        if num_classes_references == 2:
+            roc_auc = sklearn.metrics.roc_auc_score(references, logits[:, 1])
+            roc_curve = calculate_roc_curve(references, logits[:, 1]) if include_curves else None
+            pr_auc = sklearn.metrics.average_precision_score(references, logits[:, 1])
+            pr_curve = calculate_pr_curve(references, logits[:, 1]) if include_curves else None
+        else:
+            roc_auc = sklearn.metrics.roc_auc_score(references, probabilities, multi_class=multi_class)
+            roc_curve = None
+            pr_auc = None
+            pr_curve = None
+    else:
+        roc_auc = None
+        pr_auc = None
+        pr_curve = None
+        roc_curve = None
+
+    return ClassificationMetrics(
+        coverage=coverage,
+        accuracy=float(accuracy),
+        f1_score=float(f1),
+        loss=float(loss) if loss is not None else None,
+        anomaly_score_mean=anomaly_score_mean,
+        anomaly_score_median=anomaly_score_median,
+        anomaly_score_variance=anomaly_score_variance,
+        roc_auc=float(roc_auc) if roc_auc is not None else None,
+        pr_auc=float(pr_auc) if pr_auc is not None else None,
+        pr_curve=pr_curve,
+        roc_curve=roc_curve,
+    )
+
+
+@dataclass
+class RegressionMetrics:
+    coverage: float
+    """Percentage of predictions that are not none"""
+
+    mse: float
+    """Mean squared error of the predictions"""
+
+    rmse: float
+    """Root mean squared error of the predictions"""
+
+    mae: float
+    """Mean absolute error of the predictions"""
+
+    r2: float
+    """R-squared score (coefficient of determination) of the predictions"""
+
+    explained_variance: float
+    """Explained variance score of the predictions"""
+
+    loss: float
+    """Mean squared error loss of the predictions"""
+
+    anomaly_score_mean: float | None = None
+    """Mean of anomaly scores across the dataset"""
+
+    anomaly_score_median: float | None = None
+    """Median of anomaly scores across the dataset"""
+
+    anomaly_score_variance: float | None = None
+    """Variance of anomaly scores across the dataset"""
+
+    def __repr__(self) -> str:
+        return (
+            "RegressionMetrics({\n"
+            + f"    mae: {self.mae:.4f},\n"
+            + f"    rmse: {self.rmse:.4f},\n"
+            + f"    r2: {self.r2:.4f},\n"
+            + (
+                f"    anomaly_score: {self.anomaly_score_mean:.4f} ± {self.anomaly_score_variance:.4f},\n"
+                if self.anomaly_score_mean
+                else ""
+            )
+            + "})"
+        )
+
+
+def calculate_regression_metrics(
+    expected_scores: NDArray[np.float32] | list[float],
+    predicted_scores: NDArray[np.float32] | list[float],
+    anomaly_scores: list[float] | None = None,
+) -> RegressionMetrics:
+    """
+    Calculate regression metrics for model evaluation.
+
+    Params:
+        references: True target values
+        predictions: Predicted values from the model
+        anomaly_scores: Optional anomaly scores for each prediction
+
+    Returns:
+        Comprehensive regression metrics including MSE, RMSE, MAE, R², and explained variance
+
+    Raises:
+        ValueError: If predictions and references have different lengths
+    """
+    references = np.array(expected_scores)
+    predictions = np.array(predicted_scores)
+
+    if len(predictions) != len(references):
+        raise ValueError("Predictions and references must have the same length")
+
+    anomaly_score_mean = float(np.mean(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_median = float(np.median(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_variance = float(np.var(anomaly_scores)) if anomaly_scores else None
+
+    none_prediction_mask = np.isnan(predictions)
+    num_none_predictions = none_prediction_mask.sum()
+    coverage = 1 - num_none_predictions / len(predictions)
+    if num_none_predictions > 0:
+        references = references[~none_prediction_mask]
+        predictions = predictions[~none_prediction_mask]
+
+    # Calculate core regression metrics
+    mse = float(sklearn.metrics.mean_squared_error(references, predictions))
+    rmse = float(np.sqrt(mse))
+    mae = float(sklearn.metrics.mean_absolute_error(references, predictions))
+    r2 = float(sklearn.metrics.r2_score(references, predictions))
+    explained_var = float(sklearn.metrics.explained_variance_score(references, predictions))
+
+    return RegressionMetrics(
+        coverage=coverage,
+        mse=mse,
+        rmse=rmse,
+        mae=mae,
+        r2=r2,
+        explained_variance=explained_var,
+        loss=mse,  # For regression, loss is typically MSE
+        anomaly_score_mean=anomaly_score_mean,
+        anomaly_score_median=anomaly_score_median,
+        anomaly_score_variance=anomaly_score_variance,
+    )