orca-sdk 0.0.93__py3-none-any.whl → 0.0.95__py3-none-any.whl

orca_sdk/_generated_api_client/models/validation_error.py

@@ -0,0 +1,99 @@
+"""
+This file is generated by the openapi-python-client tool via the generate_api_client.py script
+
+It is a customized template from the openapi-python-client tool's default template:
+https://github.com/openapi-generators/openapi-python-client/blob/861ef5622f10fc96d240dc9becb0edf94e61446c/openapi_python_client/templates/model.py.jinja
+
+The main change is:
+- Fix typing issues
+"""
+
+# flake8: noqa: C901
+
+from typing import Any, List, Type, TypeVar, Union, cast
+
+from attrs import define as _attrs_define
+from attrs import field as _attrs_field
+
+T = TypeVar("T", bound="ValidationError")
+
+
+@_attrs_define
+class ValidationError:
+    """
+    Attributes:
+        loc (List[Union[int, str]]):
+        msg (str):
+        type (str):
+    """
+
+    loc: List[Union[int, str]]
+    msg: str
+    type: str
+    additional_properties: dict[str, Any] = _attrs_field(init=False, factory=dict)
+
+    def to_dict(self) -> dict[str, Any]:
+        loc = []
+        for loc_item_data in self.loc:
+            loc_item: Union[int, str]
+            loc_item = loc_item_data
+            loc.append(loc_item)
+
+        msg = self.msg
+
+        type = self.type
+
+        field_dict: dict[str, Any] = {}
+        field_dict.update(self.additional_properties)
+        field_dict.update(
+            {
+                "loc": loc,
+                "msg": msg,
+                "type": type,
+            }
+        )
+
+        return field_dict
+
+    @classmethod
+    def from_dict(cls: Type[T], src_dict: dict[str, Any]) -> T:
+        d = src_dict.copy()
+        loc = []
+        _loc = d.pop("loc")
+        for loc_item_data in _loc:
+
+            def _parse_loc_item(data: object) -> Union[int, str]:
+                return cast(Union[int, str], data)
+
+            loc_item = _parse_loc_item(loc_item_data)
+
+            loc.append(loc_item)
+
+        msg = d.pop("msg")
+
+        type = d.pop("type")
+
+        validation_error = cls(
+            loc=loc,
+            msg=msg,
+            type=type,
+        )
+
+        validation_error.additional_properties = d
+        return validation_error
+
+    @property
+    def additional_keys(self) -> list[str]:
+        return list(self.additional_properties.keys())
+
+    def __getitem__(self, key: str) -> Any:
+        return self.additional_properties[key]
+
+    def __setitem__(self, key: str, value: Any) -> None:
+        self.additional_properties[key] = value
+
+    def __delitem__(self, key: str) -> None:
+        del self.additional_properties[key]
+
+    def __contains__(self, key: str) -> bool:
+        return key in self.additional_properties

orca_sdk/_shared/__init__.py

@@ -1 +1,9 @@
-from .metrics import calculate_pr_curve, calculate_roc_curve, compute_classifier_metrics
+from .metrics import (
+    ClassificationMetrics,
+    PRCurve,
+    RegressionMetrics,
+    ROCCurve,
+    calculate_classification_metrics,
+    calculate_pr_curve,
+    calculate_roc_curve,
+)

orca_sdk/_shared/metrics.py

@@ -8,37 +8,25 @@ IMPORTANT:
 
 """
 
-from typing import Literal, Tuple, TypedDict
+from dataclasses import dataclass
+from typing import Any, Literal, TypedDict, cast
 
 import numpy as np
+import sklearn.metrics
 from numpy.typing import NDArray
-from scipy.special import softmax
-from sklearn.metrics import accuracy_score, auc, f1_score, log_loss
-from sklearn.metrics import precision_recall_curve as sklearn_precision_recall_curve
-from sklearn.metrics import roc_auc_score
-from sklearn.metrics import roc_curve as sklearn_roc_curve
-from transformers.trainer_utils import EvalPrediction
 
 
-class ClassificationMetrics(TypedDict):
-    accuracy: float
-    f1_score: float
-    roc_auc: float | None  # receiver operating characteristic area under the curve (if all classes are present)
-    pr_auc: float | None  # precision-recall area under the curve (only for binary classification)
-    log_loss: float  # cross-entropy loss for probabilities
-
+# we don't want to depend on scipy or torch in orca_sdk
+def softmax(logits: np.ndarray, axis: int = -1) -> np.ndarray:
+    shifted = logits - np.max(logits, axis=axis, keepdims=True)
+    exps = np.exp(shifted)
+    return exps / np.sum(exps, axis=axis, keepdims=True)
 
-def compute_classifier_metrics(eval_pred: EvalPrediction) -> ClassificationMetrics:
-    """
-    Compute standard metrics for classifier with Hugging Face Trainer.
-
-    Args:
-        eval_pred: The predictions containing logits and expected labels as given by the Trainer.
 
-    Returns:
-        A dictionary containing the accuracy, f1 score, and ROC AUC score.
-    """
-    logits, references = eval_pred
+# We don't want to depend on transformers just for the eval_pred type in orca_sdk
+def transform_eval_pred(eval_pred: Any) -> tuple[NDArray[np.int64], NDArray[np.float32]]:
+    # convert results from Trainer compute_metrics param for use in calculate_classification_metrics
+    logits, references = eval_pred  # transformers.trainer_utils.EvalPrediction
     if isinstance(logits, tuple):
         logits = logits[0]
     if not isinstance(logits, np.ndarray):
@@ -48,72 +36,20 @@ def compute_classifier_metrics(eval_pred: EvalPrediction) -> ClassificationMetri
             "Multiple label columns found, use the `label_names` training argument to specify which one to use"
         )
 
-    if not (logits > 0).all():
-        # convert logits to probabilities with softmax if necessary
-        probabilities = softmax(logits)
-    elif not np.allclose(logits.sum(-1, keepdims=True), 1.0):
-        # convert logits to probabilities through normalization if necessary
-        probabilities = logits / logits.sum(-1, keepdims=True)
-    else:
-        probabilities = logits
-
-    return classification_scores(references, probabilities)
+    return (references, logits)
 
 
-def classification_scores(
-    references: NDArray[np.int64],
-    probabilities: NDArray[np.float32],
-    average: Literal["micro", "macro", "weighted", "binary"] | None = None,
-    multi_class: Literal["ovr", "ovo"] = "ovr",
-) -> ClassificationMetrics:
-    if probabilities.ndim == 1:
-        # convert 1D probabilities (binary) to 2D logits
-        probabilities = np.column_stack([1 - probabilities, probabilities])
-    elif probabilities.ndim == 2:
-        if probabilities.shape[1] < 2:
-            raise ValueError("Use a different metric function for regression tasks")
-    else:
-        raise ValueError("Probabilities must be 1 or 2 dimensional")
-
-    predictions = np.argmax(probabilities, axis=-1)
-
-    num_classes_references = len(set(references))
-    num_classes_predictions = len(set(predictions))
-
-    if average is None:
-        average = "binary" if num_classes_references == 2 else "weighted"
-
-    accuracy = accuracy_score(references, predictions)
-    f1 = f1_score(references, predictions, average=average)
-    loss = log_loss(references, probabilities)
-
-    if num_classes_references == num_classes_predictions:
-        # special case for binary classification: https://github.com/scikit-learn/scikit-learn/issues/20186
-        if num_classes_references == 2:
-            roc_auc = roc_auc_score(references, probabilities[:, 1])
-            precisions, recalls, _ = calculate_pr_curve(references, probabilities[:, 1])
-            pr_auc = auc(recalls, precisions)
-        else:
-            roc_auc = roc_auc_score(references, probabilities, multi_class=multi_class)
-            pr_auc = None
-    else:
-        roc_auc = None
-        pr_auc = None
-
-    return {
-        "accuracy": float(accuracy),
-        "f1_score": float(f1),
-        "roc_auc": float(roc_auc) if roc_auc is not None else None,
-        "pr_auc": float(pr_auc) if pr_auc is not None else None,
-        "log_loss": float(loss),
-    }
+class PRCurve(TypedDict):
+    thresholds: list[float]
+    precisions: list[float]
+    recalls: list[float]
 
 
 def calculate_pr_curve(
     references: NDArray[np.int64],
     probabilities: NDArray[np.float32],
     max_length: int = 100,
-) -> Tuple[NDArray[np.float32], NDArray[np.float32], NDArray[np.float32]]:
+) -> PRCurve:
     if probabilities.ndim == 1:
         probabilities_slice = probabilities
     elif probabilities.ndim == 2:
@@ -124,7 +60,7 @@ def calculate_pr_curve(
     if len(probabilities_slice) != len(references):
         raise ValueError("Probabilities and references must have the same length")
 
-    precisions, recalls, thresholds = sklearn_precision_recall_curve(references, probabilities_slice)
+    precisions, recalls, thresholds = sklearn.metrics.precision_recall_curve(references, probabilities_slice)
 
     # Convert all arrays to float32 immediately after getting them
     precisions = precisions.astype(np.float32)
@@ -148,14 +84,24 @@ def calculate_pr_curve(
         precisions = new_precisions
         recalls = new_recalls
 
-    return precisions.astype(np.float32), recalls.astype(np.float32), thresholds.astype(np.float32)
+    return PRCurve(
+        thresholds=cast(list[float], thresholds.tolist()),
+        precisions=cast(list[float], precisions.tolist()),
+        recalls=cast(list[float], recalls.tolist()),
+    )
+
+
+class ROCCurve(TypedDict):
+    thresholds: list[float]
+    false_positive_rates: list[float]
+    true_positive_rates: list[float]
 
 
 def calculate_roc_curve(
     references: NDArray[np.int64],
     probabilities: NDArray[np.float32],
     max_length: int = 100,
-) -> Tuple[NDArray[np.float32], NDArray[np.float32], NDArray[np.float32]]:
+) -> ROCCurve:
     if probabilities.ndim == 1:
         probabilities_slice = probabilities
     elif probabilities.ndim == 2:
@@ -168,7 +114,7 @@ def calculate_roc_curve(
 
     # Convert probabilities to float32 before calling sklearn_roc_curve
     probabilities_slice = probabilities_slice.astype(np.float32)
-    fpr, tpr, thresholds = sklearn_roc_curve(references, probabilities_slice)
+    fpr, tpr, thresholds = sklearn.metrics.roc_curve(references, probabilities_slice)
 
     # Convert all arrays to float32 immediately after getting them
     fpr = fpr.astype(np.float32)
@@ -192,4 +138,228 @@ def calculate_roc_curve(
         fpr = new_fpr
         tpr = new_tpr
 
-    return fpr.astype(np.float32), tpr.astype(np.float32), thresholds.astype(np.float32)
+    return ROCCurve(
+        false_positive_rates=cast(list[float], fpr.tolist()),
+        true_positive_rates=cast(list[float], tpr.tolist()),
+        thresholds=cast(list[float], thresholds.tolist()),
+    )
+
+
+@dataclass
+class ClassificationMetrics:
+    f1_score: float
+    """F1 score of the predictions"""
+
+    accuracy: float
+    """Accuracy of the predictions"""
+
+    loss: float
+    """Cross-entropy loss of the logits"""
+
+    anomaly_score_mean: float | None = None
+    """Mean of anomaly scores across the dataset"""
+
+    anomaly_score_median: float | None = None
+    """Median of anomaly scores across the dataset"""
+
+    anomaly_score_variance: float | None = None
+    """Variance of anomaly scores across the dataset"""
+
+    roc_auc: float | None = None
+    """Receiver operating characteristic area under the curve"""
+
+    pr_auc: float | None = None
+    """Average precision (area under the curve of the precision-recall curve)"""
+
+    pr_curve: PRCurve | None = None
+    """Precision-recall curve"""
+
+    roc_curve: ROCCurve | None = None
+    """Receiver operating characteristic curve"""
+
+    def __repr__(self) -> str:
+        return (
+            "ClassificationMetrics({\n"
+            + f"    accuracy: {self.accuracy:.4f},\n"
+            + f"    f1_score: {self.f1_score:.4f},\n"
+            + (f"    roc_auc: {self.roc_auc:.4f},\n" if self.roc_auc else "")
+            + (f"    pr_auc: {self.pr_auc:.4f},\n" if self.pr_auc else "")
+            + (
+                f"    anomaly_score: {self.anomaly_score_mean:.4f} ± {self.anomaly_score_variance:.4f},\n"
+                if self.anomaly_score_mean
+                else ""
+            )
+            + "})"
+        )
+
+
+def calculate_classification_metrics(
+    expected_labels: list[int] | NDArray[np.int64],
+    logits: list[list[float]] | list[NDArray[np.float32]] | NDArray[np.float32],
+    anomaly_scores: list[float] | None = None,
+    average: Literal["micro", "macro", "weighted", "binary"] | None = None,
+    multi_class: Literal["ovr", "ovo"] = "ovr",
+    include_curves: bool = False,
+) -> ClassificationMetrics:
+    references = np.array(expected_labels)
+
+    logits = np.array(logits)
+    if logits.ndim == 1:
+        if (logits > 1).any() or (logits < 0).any():
+            raise ValueError("Logits must be between 0 and 1 for binary classification")
+        # convert 1D probabilities (binary) to 2D logits
+        logits = np.column_stack([1 - logits, logits])
+        probabilities = logits  # no need to convert to probabilities
+    elif logits.ndim == 2:
+        if logits.shape[1] < 2:
+            raise ValueError("Use a different metric function for regression tasks")
+        if not (logits > 0).all():
+            # convert logits to probabilities with softmax if necessary
+            probabilities = softmax(logits)
+        elif not np.allclose(logits.sum(-1, keepdims=True), 1.0):
+            # convert logits to probabilities through normalization if necessary
+            probabilities = logits / logits.sum(-1, keepdims=True)
+        else:
+            probabilities = logits
+    else:
+        raise ValueError("Logits must be 1 or 2 dimensional")
+
+    predictions = np.argmax(probabilities, axis=-1)
+
+    num_classes_references = len(set(references))
+    num_classes_predictions = len(set(predictions))
+
+    if average is None:
+        average = "binary" if num_classes_references == 2 else "weighted"
+
+    anomaly_score_mean = float(np.mean(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_median = float(np.median(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_variance = float(np.var(anomaly_scores)) if anomaly_scores else None
+
+    accuracy = sklearn.metrics.accuracy_score(references, predictions)
+    f1 = sklearn.metrics.f1_score(references, predictions, average=average)
+    loss = sklearn.metrics.log_loss(references, probabilities)
+
+    if num_classes_references == num_classes_predictions:
+        # special case for binary classification: https://github.com/scikit-learn/scikit-learn/issues/20186
+        if num_classes_references == 2:
+            roc_auc = sklearn.metrics.roc_auc_score(references, logits[:, 1])
+            roc_curve = calculate_roc_curve(references, logits[:, 1]) if include_curves else None
+            pr_auc = sklearn.metrics.average_precision_score(references, logits[:, 1])
+            pr_curve = calculate_pr_curve(references, logits[:, 1]) if include_curves else None
+        else:
+            roc_auc = sklearn.metrics.roc_auc_score(references, probabilities, multi_class=multi_class)
+            roc_curve = None
+            pr_auc = None
+            pr_curve = None
+    else:
+        roc_auc = None
+        pr_auc = None
+        pr_curve = None
+        roc_curve = None
+
+    return ClassificationMetrics(
+        accuracy=float(accuracy),
+        f1_score=float(f1),
+        loss=float(loss),
+        anomaly_score_mean=anomaly_score_mean,
+        anomaly_score_median=anomaly_score_median,
+        anomaly_score_variance=anomaly_score_variance,
+        roc_auc=float(roc_auc) if roc_auc is not None else None,
+        pr_auc=float(pr_auc) if pr_auc is not None else None,
+        pr_curve=pr_curve,
+        roc_curve=roc_curve,
+    )
+
+
+@dataclass
+class RegressionMetrics:
+    mse: float
+    """Mean squared error of the predictions"""
+
+    rmse: float
+    """Root mean squared error of the predictions"""
+
+    mae: float
+    """Mean absolute error of the predictions"""
+
+    r2: float
+    """R-squared score (coefficient of determination) of the predictions"""
+
+    explained_variance: float
+    """Explained variance score of the predictions"""
+
+    loss: float
+    """Mean squared error loss of the predictions"""
+
+    anomaly_score_mean: float | None = None
+    """Mean of anomaly scores across the dataset"""
+
+    anomaly_score_median: float | None = None
+    """Median of anomaly scores across the dataset"""
+
+    anomaly_score_variance: float | None = None
+    """Variance of anomaly scores across the dataset"""
+
+    def __repr__(self) -> str:
+        return (
+            "RegressionMetrics({\n"
+            + f"    mae: {self.mae:.4f},\n"
+            + f"    rmse: {self.rmse:.4f},\n"
+            + f"    r2: {self.r2:.4f},\n"
+            + (
+                f"    anomaly_score: {self.anomaly_score_mean:.4f} ± {self.anomaly_score_variance:.4f},\n"
+                if self.anomaly_score_mean
+                else ""
+            )
+            + "})"
+        )
+
+
+def calculate_regression_metrics(
+    expected_scores: NDArray[np.float32] | list[float],
+    predicted_scores: NDArray[np.float32] | list[float],
+    anomaly_scores: list[float] | None = None,
+) -> RegressionMetrics:
+    """
+    Calculate regression metrics for model evaluation.
+
+    Params:
+        references: True target values
+        predictions: Predicted values from the model
+        anomaly_scores: Optional anomaly scores for each prediction
+
+    Returns:
+        Comprehensive regression metrics including MSE, RMSE, MAE, R², and explained variance
+
+    Raises:
+        ValueError: If predictions and references have different lengths
+    """
+    references = np.array(expected_scores)
+    predictions = np.array(predicted_scores)
+
+    if len(predictions) != len(references):
+        raise ValueError("Predictions and references must have the same length")
+
+    anomaly_score_mean = float(np.mean(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_median = float(np.median(anomaly_scores)) if anomaly_scores else None
+    anomaly_score_variance = float(np.var(anomaly_scores)) if anomaly_scores else None
+
+    # Calculate core regression metrics
+    mse = float(sklearn.metrics.mean_squared_error(references, predictions))
+    rmse = float(np.sqrt(mse))
+    mae = float(sklearn.metrics.mean_absolute_error(references, predictions))
+    r2 = float(sklearn.metrics.r2_score(references, predictions))
+    explained_var = float(sklearn.metrics.explained_variance_score(references, predictions))
+
+    return RegressionMetrics(
+        mse=mse,
+        rmse=rmse,
+        mae=mae,
+        r2=r2,
+        explained_variance=explained_var,
+        loss=mse,  # For regression, loss is typically MSE
+        anomaly_score_mean=anomaly_score_mean,
+        anomaly_score_median=anomaly_score_median,
+        anomaly_score_variance=anomaly_score_variance,
+    )