openpnm 1.0.0__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (108) hide show
  1. OpenPNM-1.1/MANIFEST.in +2 -0
  2. OpenPNM-1.1/OpenPNM/Algorithms/__FickianDiffusion__.py +67 -0
  3. OpenPNM-1.1/OpenPNM/Algorithms/__FourierConduction__.py +63 -0
  4. OpenPNM-1.1/OpenPNM/Algorithms/__GenericAlgorithm__.py +235 -0
  5. OpenPNM-1.1/OpenPNM/Algorithms/__GenericLinearTransport__.py +641 -0
  6. OpenPNM-1.1/OpenPNM/Algorithms/__InvasionPercolationForImbibition__.py +703 -0
  7. OpenPNM-1.1/OpenPNM/Algorithms/__InvasionPercolationTimed__.py +702 -0
  8. OpenPNM-1.1/OpenPNM/Algorithms/__InvasionPercolation__.py +156 -0
  9. OpenPNM-1.1/OpenPNM/Algorithms/__OhmicConduction__.py +64 -0
  10. OpenPNM-1.1/OpenPNM/Algorithms/__OrdinaryPercolation__.py +402 -0
  11. OpenPNM-1.1/OpenPNM/Algorithms/__StokesFlow__.py +64 -0
  12. OpenPNM-1.1/OpenPNM/Algorithms/__Tortuosity__.py +91 -0
  13. OpenPNM-1.1/OpenPNM/Algorithms/__init__.py +48 -0
  14. OpenPNM-1.1/OpenPNM/Base/__Controller__.py +480 -0
  15. OpenPNM-1.1/OpenPNM/Base/__Core__.py +1522 -0
  16. OpenPNM-1.1/OpenPNM/Base/__ModelsDict__.py +345 -0
  17. OpenPNM-1.1/OpenPNM/Base/__Tools__.py +72 -0
  18. OpenPNM-1.1/OpenPNM/Base/__init__.py +32 -0
  19. OpenPNM-1.1/OpenPNM/Geometry/__Boundary__.py +80 -0
  20. OpenPNM-1.1/OpenPNM/Geometry/__Cube_and_Cuboid__.py +64 -0
  21. OpenPNM-1.1/OpenPNM/Geometry/__GenericGeometry__.py +106 -0
  22. OpenPNM-1.1/OpenPNM/Geometry/__SGL10__.py +67 -0
  23. OpenPNM-1.1/OpenPNM/Geometry/__Stick_and_Ball__.py +68 -0
  24. OpenPNM-1.1/OpenPNM/Geometry/__TestGeometry__.py +51 -0
  25. OpenPNM-1.1/OpenPNM/Geometry/__Toray090__.py +68 -0
  26. OpenPNM-1.1/OpenPNM/Geometry/__Voronoi__.py +98 -0
  27. OpenPNM-1.1/OpenPNM/Geometry/__init__.py +47 -0
  28. OpenPNM-1.1/OpenPNM/Geometry/models/__init__.py +33 -0
  29. OpenPNM-1.1/OpenPNM/Geometry/models/pore_area.py +27 -0
  30. OpenPNM-1.1/OpenPNM/Geometry/models/pore_centroid.py +35 -0
  31. OpenPNM-1.1/OpenPNM/Geometry/models/pore_diameter.py +127 -0
  32. OpenPNM-1.1/OpenPNM/Geometry/models/pore_misc.py +55 -0
  33. OpenPNM-1.1/OpenPNM/Geometry/models/pore_seed.py +212 -0
  34. OpenPNM-1.1/OpenPNM/Geometry/models/pore_surface_area.py +28 -0
  35. OpenPNM-1.1/OpenPNM/Geometry/models/pore_vertices.py +19 -0
  36. OpenPNM-1.1/OpenPNM/Geometry/models/pore_volume.py +133 -0
  37. OpenPNM-1.1/OpenPNM/Geometry/models/throat_area.py +47 -0
  38. OpenPNM-1.1/OpenPNM/Geometry/models/throat_centroid.py +80 -0
  39. OpenPNM-1.1/OpenPNM/Geometry/models/throat_diameter.py +106 -0
  40. OpenPNM-1.1/OpenPNM/Geometry/models/throat_length.py +95 -0
  41. OpenPNM-1.1/OpenPNM/Geometry/models/throat_misc.py +42 -0
  42. OpenPNM-1.1/OpenPNM/Geometry/models/throat_normal.py +31 -0
  43. OpenPNM-1.1/OpenPNM/Geometry/models/throat_offset_vertices.py +191 -0
  44. OpenPNM-1.1/OpenPNM/Geometry/models/throat_perimeter.py +26 -0
  45. OpenPNM-1.1/OpenPNM/Geometry/models/throat_seed.py +12 -0
  46. OpenPNM-1.1/OpenPNM/Geometry/models/throat_shape_factor.py +37 -0
  47. OpenPNM-1.1/OpenPNM/Geometry/models/throat_surface_area.py +44 -0
  48. OpenPNM-1.1/OpenPNM/Geometry/models/throat_vector.py +27 -0
  49. OpenPNM-1.1/OpenPNM/Geometry/models/throat_vertices.py +19 -0
  50. OpenPNM-1.1/OpenPNM/Geometry/models/throat_volume.py +45 -0
  51. OpenPNM-1.1/OpenPNM/Network/__Cubic__.py +316 -0
  52. OpenPNM-1.1/OpenPNM/Network/__DelaunayCubic__.py +127 -0
  53. OpenPNM-1.1/OpenPNM/Network/__Delaunay__.py +600 -0
  54. OpenPNM-1.1/OpenPNM/Network/__GenericNetwork__.py +1184 -0
  55. OpenPNM-1.1/OpenPNM/Network/__MatFile__.py +331 -0
  56. OpenPNM-1.1/OpenPNM/Network/__TestNet__.py +109 -0
  57. OpenPNM-1.1/OpenPNM/Network/__init__.py +40 -0
  58. OpenPNM-1.1/OpenPNM/Network/models/__init__.py +12 -0
  59. OpenPNM-1.1/OpenPNM/Network/models/pore_topology.py +106 -0
  60. OpenPNM-1.1/OpenPNM/Phases/__Air__.py +63 -0
  61. OpenPNM-1.1/OpenPNM/Phases/__GenericPhase__.py +146 -0
  62. OpenPNM-1.1/OpenPNM/Phases/__Mercury__.py +71 -0
  63. OpenPNM-1.1/OpenPNM/Phases/__TestPhase__.py +46 -0
  64. OpenPNM-1.1/OpenPNM/Phases/__Water__.py +56 -0
  65. OpenPNM-1.1/OpenPNM/Phases/__init__.py +38 -0
  66. OpenPNM-1.1/OpenPNM/Phases/models/__init__.py +22 -0
  67. OpenPNM-1.1/OpenPNM/Phases/models/contact_angle.py +34 -0
  68. OpenPNM-1.1/OpenPNM/Phases/models/density.py +81 -0
  69. OpenPNM-1.1/OpenPNM/Phases/models/diffusivity.py +95 -0
  70. OpenPNM-1.1/OpenPNM/Phases/models/electrical_conductivity.py +10 -0
  71. OpenPNM-1.1/OpenPNM/Phases/models/misc.py +125 -0
  72. OpenPNM-1.1/OpenPNM/Phases/models/molar_density.py +69 -0
  73. OpenPNM-1.1/OpenPNM/Phases/models/molar_mass.py +31 -0
  74. OpenPNM-1.1/OpenPNM/Phases/models/surface_tension.py +104 -0
  75. OpenPNM-1.1/OpenPNM/Phases/models/thermal_conductivity.py +98 -0
  76. OpenPNM-1.1/OpenPNM/Phases/models/vapor_pressure.py +69 -0
  77. OpenPNM-1.1/OpenPNM/Phases/models/viscosity.py +103 -0
  78. OpenPNM-1.1/OpenPNM/Physics/__GenericPhysics__.py +111 -0
  79. OpenPNM-1.1/OpenPNM/Physics/__Standard__.py +51 -0
  80. OpenPNM-1.1/OpenPNM/Physics/__TestPhysics__.py +50 -0
  81. OpenPNM-1.1/OpenPNM/Physics/__init__.py +30 -0
  82. OpenPNM-1.1/OpenPNM/Physics/models/__init__.py +18 -0
  83. OpenPNM-1.1/OpenPNM/Physics/models/capillary_pressure.py +122 -0
  84. OpenPNM-1.1/OpenPNM/Physics/models/diffusive_conductance.py +82 -0
  85. OpenPNM-1.1/OpenPNM/Physics/models/electrical_conductance.py +59 -0
  86. OpenPNM-1.1/OpenPNM/Physics/models/generic_source_term.py +564 -0
  87. OpenPNM-1.1/OpenPNM/Physics/models/hydraulic_conductance.py +76 -0
  88. OpenPNM-1.1/OpenPNM/Physics/models/multiphase.py +133 -0
  89. OpenPNM-1.1/OpenPNM/Physics/models/thermal_conductance.py +67 -0
  90. OpenPNM-1.1/OpenPNM/Postprocessing/Graphics.py +251 -0
  91. OpenPNM-1.1/OpenPNM/Postprocessing/Plots.py +369 -0
  92. OpenPNM-1.1/OpenPNM/Postprocessing/__init__.py +10 -0
  93. OpenPNM-1.1/OpenPNM/Utilities/IO.py +277 -0
  94. OpenPNM-1.1/OpenPNM/Utilities/Shortcuts.py +17 -0
  95. OpenPNM-1.1/OpenPNM/Utilities/__init__.py +16 -0
  96. OpenPNM-1.1/OpenPNM/Utilities/misc.py +226 -0
  97. OpenPNM-1.1/OpenPNM/Utilities/transformations.py +1923 -0
  98. OpenPNM-1.1/OpenPNM/Utilities/vertexops.py +824 -0
  99. OpenPNM-1.1/OpenPNM/__init__.py +56 -0
  100. OpenPNM-1.1/OpenPNM.egg-info/PKG-INFO +11 -0
  101. OpenPNM-1.1/OpenPNM.egg-info/SOURCES.txt +107 -0
  102. OpenPNM-1.1/OpenPNM.egg-info/dependency_links.txt +1 -0
  103. OpenPNM-1.1/OpenPNM.egg-info/requires.txt +1 -0
  104. OpenPNM-1.1/OpenPNM.egg-info/top_level.txt +1 -0
  105. OpenPNM-1.1/PKG-INFO +11 -0
  106. OpenPNM-1.1/README.txt +88 -0
  107. OpenPNM-1.1/setup.cfg +7 -0
  108. OpenPNM-1.1/setup.py +39 -0
@@ -0,0 +1,56 @@
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+ r"""
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+ ##################################################################################
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+ :mod:`OpenPNM` -- A scientific pore network simulator for porous media transport
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+ ##################################################################################
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+
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+ Documentation is available in the docstrings and in the on-line documentation.
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+
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+
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+ Subpackages
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+ -----------
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+
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+ .. list-table:: OpenPNM Submodule structure.
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+ :widths: 10 80
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+ :header-rows: 1
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+
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+ * - Name
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+ - Description
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+ * - :mod:`OpenPNM.Network`
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+ - Storage and manipulations of network topoologies and data stored on them.
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+ * - :mod:`OpenPNM.Geometry`
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+ - Geometry for pore networks. (Random cubic, image based, Voronoi). Should also contain
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+ a mapper of the pore network back on the segmented image.
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+ * - :mod:`OpenPNM.Physics`
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+ - Module containing pore scale physics models and equations.
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+ * - :mod:`OpenPNM.Phases`
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+ - Module containing thremophyics property estimation models.
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+ * - :mod:`OpenPNM.Algorithms`
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+ - Module containing all algorithmic classes for networks.
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+ * - :mod:`OpenPNM.Utilities`
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+ - common utilities and classes used by most of the of the modules
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+
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+ Import
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+ ------
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+ >>> import OpenPNM
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+
36
+ """
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+
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+ import scipy as sp
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+
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+ if sp.__version__ < '0.14.0':
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+ raise Exception('OpenPNM requires SciPy version 0.14.0 or greater')
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+
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+ __version__ = '1.1-beta'
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+
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+ __requires__ = ['scipy']
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+
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+ from . import Base
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+ from . import Utilities
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+ from . import Network
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+ from . import Geometry
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+ from . import Phases
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+ from . import Physics
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+ from . import Algorithms
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+ from . import Postprocessing
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+
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+
@@ -0,0 +1,11 @@
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+ Metadata-Version: 1.1
2
+ Name: OpenPNM
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+ Version: 1.1
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+ Summary: A framework for conducting pore network modeling simulations of multiphase transport in porous materials.
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+ Home-page: https://github.com/pmeal/OpenPNM
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+ Author: OpenPNM Team
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+ Author-email: jeff.gostick@mcgill.ca
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+ License: UNKNOWN
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+ Download-URL: https://github.com/pmeal/OpenPNM/
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+ Description: UNKNOWN
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+ Platform: UNKNOWN
@@ -0,0 +1,107 @@
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+ MANIFEST.in
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+ README.txt
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+ setup.cfg
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+ setup.py
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+ OpenPNM/__init__.py
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+ OpenPNM.egg-info/PKG-INFO
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+ OpenPNM.egg-info/SOURCES.txt
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+ OpenPNM.egg-info/dependency_links.txt
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+ OpenPNM.egg-info/requires.txt
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+ OpenPNM.egg-info/top_level.txt
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+ OpenPNM/Algorithms/__FickianDiffusion__.py
12
+ OpenPNM/Algorithms/__FourierConduction__.py
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+ OpenPNM/Algorithms/__GenericAlgorithm__.py
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+ OpenPNM/Algorithms/__GenericLinearTransport__.py
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+ OpenPNM/Algorithms/__InvasionPercolationForImbibition__.py
16
+ OpenPNM/Algorithms/__InvasionPercolationTimed__.py
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+ OpenPNM/Algorithms/__InvasionPercolation__.py
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+ OpenPNM/Algorithms/__OhmicConduction__.py
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+ OpenPNM/Algorithms/__OrdinaryPercolation__.py
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+ OpenPNM/Algorithms/__StokesFlow__.py
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+ OpenPNM/Algorithms/__Tortuosity__.py
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+ OpenPNM/Algorithms/__init__.py
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+ OpenPNM/Base/__Controller__.py
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+ OpenPNM/Base/__Core__.py
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+ OpenPNM/Base/__ModelsDict__.py
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+ OpenPNM/Base/__Tools__.py
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+ OpenPNM/Base/__init__.py
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+ OpenPNM/Geometry/__Boundary__.py
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+ OpenPNM/Geometry/__Cube_and_Cuboid__.py
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+ OpenPNM/Geometry/__GenericGeometry__.py
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+ OpenPNM/Geometry/__SGL10__.py
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+ OpenPNM/Geometry/__Stick_and_Ball__.py
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+ OpenPNM/Geometry/__TestGeometry__.py
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+ OpenPNM/Geometry/__Toray090__.py
35
+ OpenPNM/Geometry/__Voronoi__.py
36
+ OpenPNM/Geometry/__init__.py
37
+ OpenPNM/Geometry/models/__init__.py
38
+ OpenPNM/Geometry/models/pore_area.py
39
+ OpenPNM/Geometry/models/pore_centroid.py
40
+ OpenPNM/Geometry/models/pore_diameter.py
41
+ OpenPNM/Geometry/models/pore_misc.py
42
+ OpenPNM/Geometry/models/pore_seed.py
43
+ OpenPNM/Geometry/models/pore_surface_area.py
44
+ OpenPNM/Geometry/models/pore_vertices.py
45
+ OpenPNM/Geometry/models/pore_volume.py
46
+ OpenPNM/Geometry/models/throat_area.py
47
+ OpenPNM/Geometry/models/throat_centroid.py
48
+ OpenPNM/Geometry/models/throat_diameter.py
49
+ OpenPNM/Geometry/models/throat_length.py
50
+ OpenPNM/Geometry/models/throat_misc.py
51
+ OpenPNM/Geometry/models/throat_normal.py
52
+ OpenPNM/Geometry/models/throat_offset_vertices.py
53
+ OpenPNM/Geometry/models/throat_perimeter.py
54
+ OpenPNM/Geometry/models/throat_seed.py
55
+ OpenPNM/Geometry/models/throat_shape_factor.py
56
+ OpenPNM/Geometry/models/throat_surface_area.py
57
+ OpenPNM/Geometry/models/throat_vector.py
58
+ OpenPNM/Geometry/models/throat_vertices.py
59
+ OpenPNM/Geometry/models/throat_volume.py
60
+ OpenPNM/Network/__Cubic__.py
61
+ OpenPNM/Network/__DelaunayCubic__.py
62
+ OpenPNM/Network/__Delaunay__.py
63
+ OpenPNM/Network/__GenericNetwork__.py
64
+ OpenPNM/Network/__MatFile__.py
65
+ OpenPNM/Network/__TestNet__.py
66
+ OpenPNM/Network/__init__.py
67
+ OpenPNM/Network/models/__init__.py
68
+ OpenPNM/Network/models/pore_topology.py
69
+ OpenPNM/Phases/__Air__.py
70
+ OpenPNM/Phases/__GenericPhase__.py
71
+ OpenPNM/Phases/__Mercury__.py
72
+ OpenPNM/Phases/__TestPhase__.py
73
+ OpenPNM/Phases/__Water__.py
74
+ OpenPNM/Phases/__init__.py
75
+ OpenPNM/Phases/models/__init__.py
76
+ OpenPNM/Phases/models/contact_angle.py
77
+ OpenPNM/Phases/models/density.py
78
+ OpenPNM/Phases/models/diffusivity.py
79
+ OpenPNM/Phases/models/electrical_conductivity.py
80
+ OpenPNM/Phases/models/misc.py
81
+ OpenPNM/Phases/models/molar_density.py
82
+ OpenPNM/Phases/models/molar_mass.py
83
+ OpenPNM/Phases/models/surface_tension.py
84
+ OpenPNM/Phases/models/thermal_conductivity.py
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+ OpenPNM/Phases/models/vapor_pressure.py
86
+ OpenPNM/Phases/models/viscosity.py
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+ OpenPNM/Physics/__GenericPhysics__.py
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+ OpenPNM/Physics/__Standard__.py
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+ OpenPNM/Physics/__TestPhysics__.py
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+ OpenPNM/Physics/__init__.py
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+ OpenPNM/Physics/models/__init__.py
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+ OpenPNM/Physics/models/capillary_pressure.py
93
+ OpenPNM/Physics/models/diffusive_conductance.py
94
+ OpenPNM/Physics/models/electrical_conductance.py
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+ OpenPNM/Physics/models/generic_source_term.py
96
+ OpenPNM/Physics/models/hydraulic_conductance.py
97
+ OpenPNM/Physics/models/multiphase.py
98
+ OpenPNM/Physics/models/thermal_conductance.py
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+ OpenPNM/Postprocessing/Graphics.py
100
+ OpenPNM/Postprocessing/Plots.py
101
+ OpenPNM/Postprocessing/__init__.py
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+ OpenPNM/Utilities/IO.py
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+ OpenPNM/Utilities/Shortcuts.py
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+ OpenPNM/Utilities/__init__.py
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+ OpenPNM/Utilities/misc.py
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+ OpenPNM/Utilities/transformations.py
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+ OpenPNM/Utilities/vertexops.py
@@ -0,0 +1 @@
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+ scipy>=0.14.0
@@ -0,0 +1 @@
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+ OpenPNM
OpenPNM-1.1/PKG-INFO ADDED
@@ -0,0 +1,11 @@
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+ Metadata-Version: 1.1
2
+ Name: OpenPNM
3
+ Version: 1.1
4
+ Summary: A framework for conducting pore network modeling simulations of multiphase transport in porous materials.
5
+ Home-page: https://github.com/pmeal/OpenPNM
6
+ Author: OpenPNM Team
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+ Author-email: jeff.gostick@mcgill.ca
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+ License: UNKNOWN
9
+ Download-URL: https://github.com/pmeal/OpenPNM/
10
+ Description: UNKNOWN
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+ Platform: UNKNOWN
OpenPNM-1.1/README.txt ADDED
@@ -0,0 +1,88 @@
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+ OpenPNM
2
+ =======
3
+
4
+ .. contents::
5
+
6
+ What is OpenPNM?
7
+ --------------
8
+
9
+ OpenPNM is open-source framework for conducting pore network modeling
10
+ simulations of multiphase transport in porous materials. It includes
11
+ modules for generating various common network topologies, pore and
12
+ throat geometry models, pore scale physics models, and fluid property
13
+ estimation. It also contains a large set of algorithms for running various
14
+ simulations such drainage curves, gas diffusion, permeability, and more.
15
+
16
+ OpenPNM is written in Python making extensive use of Scipy. Python is a very
17
+ flexible object oriented programming language that will be familiar to those
18
+ with experience using Matlab. OpenPNM takes advantages of the OOP paradigm
19
+ to structure the framework, but we stress that it is coded by engineers
20
+ without significant prior knowledge of object-oriented coding. Our goal
21
+ is to help other scientists and engineers harness the power and intuitive
22
+ pore network modeling approach, so if you are interested in this package,
23
+ please contact us through Github, or email one of the developer directly.
24
+
25
+
26
+ Installation
27
+ ------------
28
+
29
+ .. code-block:: python
30
+
31
+ pip install openpnm
32
+
33
+
34
+ Documentation
35
+ -------------
36
+
37
+ OpenPNM documentation is available on the web:
38
+
39
+ http://openpnm.org
40
+
41
+
42
+ Web sites
43
+ ---------
44
+
45
+ The user's site is:
46
+
47
+ http://openpnm.org
48
+
49
+
50
+ Mailing Lists
51
+ -------------
52
+
53
+ Please see the developer's discussion on GitHub:
54
+
55
+ https://github.com/PMEAL/OpenPNM/issues
56
+
57
+
58
+ Latest source code
59
+ ------------------
60
+
61
+ The latest development version of OpenPNM sources are always available at:
62
+
63
+ https://github.com/PMEAL/OpenPNM
64
+
65
+ They can be downloaded as a zip file or using the Git client.
66
+
67
+
68
+ Bug reports
69
+ -----------
70
+
71
+ To search for bugs or report them, please use the OpenPNM Bug Tracker at:
72
+
73
+ https://github.com/PMEAL/OpenPNM/issues
74
+
75
+
76
+ Developer information
77
+ ---------------------
78
+
79
+ If you would like to take part in OpenPNM development, please join the discussion on Github.
80
+ We are a small group and can guide you directly.
81
+
82
+
83
+ License information
84
+ -------------------
85
+
86
+ See the file ``LICENSE.txt`` for information on the history of this
87
+ software, terms & conditions for usage, and a DISCLAIMER OF ALL
88
+ WARRANTIES.
OpenPNM-1.1/setup.cfg ADDED
@@ -0,0 +1,7 @@
1
+ [easy_install]
2
+
3
+ [egg_info]
4
+ tag_svn_revision = 0
5
+ tag_build =
6
+ tag_date = 0
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+
OpenPNM-1.1/setup.py ADDED
@@ -0,0 +1,39 @@
1
+ #!/usr/bin/env python
2
+
3
+ import os
4
+ import sys
5
+ sys.path.append(os.getcwd())
6
+
7
+ import scipy as sp
8
+
9
+ if sp.__version__ < '0.14.0':
10
+ raise Exception('OpenPNM requires SciPy version 0.14.0 or greater')
11
+
12
+ try:
13
+ from setuptools import setup
14
+ except ImportError:
15
+ from distutils.core import setup
16
+
17
+ setup(
18
+ name='OpenPNM',
19
+ packages=['OpenPNM',
20
+ 'OpenPNM.Base',
21
+ 'OpenPNM.Network',
22
+ 'OpenPNM.Network.models',
23
+ 'OpenPNM.Geometry',
24
+ 'OpenPNM.Geometry.models',
25
+ 'OpenPNM.Phases',
26
+ 'OpenPNM.Phases.models',
27
+ 'OpenPNM.Physics',
28
+ 'OpenPNM.Physics.models',
29
+ 'OpenPNM.Utilities',
30
+ 'OpenPNM.Algorithms',
31
+ 'OpenPNM.Postprocessing'],
32
+ version='1.1',
33
+ description="A framework for conducting pore network modeling simulations of multiphase transport in porous materials.",
34
+ author='OpenPNM Team',
35
+ author_email='jeff.gostick@mcgill.ca',
36
+ download_url='https://github.com/pmeal/OpenPNM/',
37
+ url='https://github.com/pmeal/OpenPNM',
38
+ install_requires = ['scipy>=0.14.0'],
39
+ )