openforis-whisp 2.0.0b1__py3-none-any.whl → 2.0.0b3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- openforis_whisp/__init__.py +2 -1
- openforis_whisp/data_conversion.py +11 -0
- openforis_whisp/datasets.py +207 -247
- openforis_whisp/parameters/lookup_gee_datasets.csv +2 -5
- openforis_whisp/risk.py +29 -29
- openforis_whisp/stats.py +297 -47
- openforis_whisp/utils.py +298 -5
- {openforis_whisp-2.0.0b1.dist-info → openforis_whisp-2.0.0b3.dist-info}/METADATA +1 -1
- openforis_whisp-2.0.0b3.dist-info/RECORD +16 -0
- openforis_whisp/parameters/__init__.py +0 -15
- openforis_whisp-2.0.0b1.dist-info/RECORD +0 -17
- {openforis_whisp-2.0.0b1.dist-info → openforis_whisp-2.0.0b3.dist-info}/LICENSE +0 -0
- {openforis_whisp-2.0.0b1.dist-info → openforis_whisp-2.0.0b3.dist-info}/WHEEL +0 -0
openforis_whisp/utils.py
CHANGED
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@@ -3,6 +3,8 @@ import ee
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import math
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import os
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import pandas as pd
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import random
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import numpy as np
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import urllib.request
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import os
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@@ -12,6 +14,9 @@ import importlib.resources as pkg_resources
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from dotenv import load_dotenv
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from pathlib import Path
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from shapely.geometry import Polygon, Point, mapping
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from shapely.validation import make_valid
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from .logger import StdoutLogger
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@@ -160,31 +165,31 @@ class DotEnvNotFoundError(FileNotFoundError):
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def get_example_geojson(filename="geojson_example.geojson", cache=True):
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"""
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Download example geojson file for testing whisp functionality.
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Parameters:
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-----------
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filename : str
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Local filename to save the geojson
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cache : bool
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If True, cache file in user directory to avoid re-downloading
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Returns:
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--------
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str
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Path to the downloaded geojson file
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"""
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url = "https://raw.githubusercontent.com/forestdatapartnership/whisp/main/tests/fixtures/geojson_example.geojson"
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if cache:
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cache_dir = os.path.join(os.path.expanduser("~"), ".whisp_cache")
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os.makedirs(cache_dir, exist_ok=True)
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filepath = os.path.join(cache_dir, filename)
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if os.path.exists(filepath):
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return filepath
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else:
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filepath = filename
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-
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try:
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urllib.request.urlretrieve(url, filepath)
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return filepath
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@@ -192,3 +197,291 @@ def get_example_geojson(filename="geojson_example.geojson", cache=True):
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raise RuntimeError(f"Failed to download example geojson: {e}")
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def generate_random_polygon(
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min_lon, min_lat, max_lon, max_lat, min_area_ha=1, max_area_ha=10, vertex_count=20
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):
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"""
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Generate a random polygon with exact vertex count control.
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Parameters
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----------
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min_lon : float
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Minimum longitude
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min_lat : float
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Minimum latitude
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max_lon : float
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Maximum longitude
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max_lat : float
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Maximum latitude
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min_area_ha : float
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Minimum area in hectares
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max_area_ha : float
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Maximum area in hectares
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vertex_count : int
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Exact number of vertices for the polygon
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Returns
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-------
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tuple
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(Polygon, actual_area_ha)
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"""
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target_area_ha = random.uniform(min_area_ha, max_area_ha)
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center_lon = random.uniform(min_lon, max_lon)
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center_lat = random.uniform(min_lat, max_lat)
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# Estimate radius for target area
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target_area_m2 = target_area_ha * 10000 # hectares to square meters
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radius_meters = math.sqrt(target_area_m2 / math.pi)
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radius_degrees = radius_meters / (111320 * math.cos(math.radians(center_lat)))
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# Create center point
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center_point = Point(center_lon, center_lat)
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# Use buffer with resolution to control vertices for smaller vertex counts
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if vertex_count <= 50:
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poly = center_point.buffer(radius_degrees, resolution=vertex_count // 4)
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# Manual vertex creation for higher vertex counts
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if vertex_count > 50:
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angles = np.linspace(0, 2 * math.pi, vertex_count, endpoint=False)
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base_radius = radius_degrees
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# Smooth sine wave variations for natural look
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freq1 = random.uniform(2, 5)
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amp1 = random.uniform(0.08, 0.15)
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freq2 = random.uniform(8, 15)
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amp2 = random.uniform(0.03, 0.08)
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radius_variation = amp1 * np.sin(
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freq1 * angles + random.uniform(0, 2 * math.pi)
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) + amp2 * np.sin(freq2 * angles + random.uniform(0, 2 * math.pi))
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radii = base_radius * (1.0 + radius_variation)
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radii = np.maximum(radii, base_radius * 0.6)
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xs = center_lon + radii * np.cos(angles)
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ys = center_lat + radii * np.sin(angles)
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xs = np.clip(xs, min_lon, max_lon)
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ys = np.clip(ys, min_lat, max_lat)
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vertices = list(zip(xs, ys))
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vertices.append(vertices[0])
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poly = Polygon(vertices)
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if not poly.is_valid:
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poly = make_valid(poly)
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if hasattr(poly, "geoms"):
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poly = max(poly.geoms, key=lambda p: p.area)
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else:
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# Resample to get exact vertex count for buffered circles
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coords = list(poly.exterior.coords)
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if len(coords) - 1 != vertex_count:
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angles = np.linspace(0, 2 * math.pi, vertex_count, endpoint=False)
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new_coords = []
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for angle in angles:
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x = center_lon + radius_degrees * math.cos(angle)
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y = center_lat + radius_degrees * math.sin(angle)
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dx = random.uniform(-radius_degrees * 0.08, radius_degrees * 0.08)
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dy = random.uniform(-radius_degrees * 0.08, radius_degrees * 0.08)
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new_x = np.clip(x + dx, min_lon, max_lon)
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new_y = np.clip(y + dy, min_lat, max_lat)
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new_coords.append((new_x, new_y))
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new_coords.append(new_coords[0])
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poly = Polygon(new_coords)
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# Calculate actual area
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area_sq_degrees = poly.area
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area_sq_meters = (
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area_sq_degrees * (111320 * math.cos(math.radians(center_lat))) ** 2
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)
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actual_area_ha = area_sq_meters / 10000
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return poly, actual_area_ha
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def generate_test_polygons(
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bounds,
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num_polygons=25,
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min_area_ha=1,
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max_area_ha=10,
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min_number_vert=10,
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max_number_vert=20,
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):
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"""
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Generate synthetic test polygons with exact vertex count control.
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This utility is useful for testing WHISP processing with controlled test data,
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especially when you need polygons with specific characteristics (area, complexity).
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Parameters
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----------
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bounds : list or ee.Geometry
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Either a list of [min_lon, min_lat, max_lon, max_lat] or an Earth Engine Geometry.
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Examples:
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- Simple bounds: [-81.0, -19.3, -31.5, 9.6]
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- EE Geometry: ee.FeatureCollection('USDOS/LSIB_SIMPLE/2017').filter(
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ee.Filter.eq('country_na', 'Brazil')).first().geometry()
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num_polygons : int, optional
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Number of polygons to generate (default: 25)
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min_area_ha : float, optional
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Minimum area in hectares (default: 1)
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max_area_ha : float, optional
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Maximum area in hectares (default: 10)
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min_number_vert : int, optional
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Minimum number of vertices per polygon (default: 10)
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max_number_vert : int, optional
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Maximum number of vertices per polygon (default: 20)
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Returns
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-------
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dict
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GeoJSON FeatureCollection with generated polygons. Each feature includes:
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- internal_id: Sequential ID starting from 1
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- requested_vertices: Number of vertices requested
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- actual_vertices: Actual number of vertices created
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- requested_area_ha: Target area in hectares
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- actual_area_ha: Actual area in hectares
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Examples
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--------
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>>> import openforis_whisp as whisp
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>>> import ee
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>>>
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>>> # Using simple bounds (list)
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>>> bounds_list = [-81.0, -19.3, -31.5, 9.6]
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>>> geojson = whisp.generate_test_polygons(bounds_list, num_polygons=100)
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>>>
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>>> # Using Earth Engine Geometry
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>>> brazil = ee.FeatureCollection('USDOS/LSIB_SIMPLE/2017').filter(
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... ee.Filter.eq('country_na', 'Brazil')
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... ).first().geometry()
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>>> geojson = whisp.generate_test_polygons(brazil, num_polygons=100,
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... min_area_ha=100, max_area_ha=1000)
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>>>
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>>> # Save to file
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>>> import json
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>>> with open('test_polygons.geojson', 'w') as f:
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... json.dump(geojson, f)
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"""
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# Handle Earth Engine Geometry or simple bounds
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if hasattr(bounds, "bounds"): # It's an ee.Geometry
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logger.logger.info("Extracting bounds from Earth Engine Geometry...")
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try:
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bounds_geom = (
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bounds.bounds()
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if not hasattr(bounds, "coordinates")
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or bounds.type().getInfo() != "Rectangle"
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else bounds
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)
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bounds_coords = bounds_geom.coordinates().getInfo()[0]
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min_lon = min(coord[0] for coord in bounds_coords)
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max_lon = max(coord[0] for coord in bounds_coords)
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min_lat = min(coord[1] for coord in bounds_coords)
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max_lat = max(coord[1] for coord in bounds_coords)
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logger.logger.info(
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f"Bounds: [{min_lon:.2f}, {min_lat:.2f}, {max_lon:.2f}, {max_lat:.2f}]"
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)
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except Exception as e:
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raise ValueError(
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f"Failed to extract bounds from Earth Engine Geometry: {e}"
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)
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elif isinstance(bounds, (list, tuple)) and len(bounds) == 4:
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min_lon, min_lat, max_lon, max_lat = bounds
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else:
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raise ValueError(
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"bounds must be either:\n"
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" - A list of [min_lon, min_lat, max_lon, max_lat]\n"
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" - An Earth Engine Geometry (ee.Geometry, ee.Feature.geometry(), etc.)"
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)
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# Validate parameters
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if min_number_vert > max_number_vert:
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raise ValueError(
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f"min_number_vert ({min_number_vert}) cannot be greater than max_number_vert ({max_number_vert})"
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)
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if min_area_ha > max_area_ha:
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raise ValueError(
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f"min_area_ha ({min_area_ha}) cannot be greater than max_area_ha ({max_area_ha})"
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)
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if num_polygons < 1:
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raise ValueError(f"num_polygons must be at least 1 (got {num_polygons})")
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logger.logger.info(
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f"Generating {num_polygons} test polygons with {min_number_vert}-{max_number_vert} vertices..."
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)
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features = []
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# Pre-generate all random values
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vertex_counts = np.random.randint(
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min_number_vert, max_number_vert + 1, num_polygons
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)
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target_areas = np.random.uniform(min_area_ha, max_area_ha, num_polygons)
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for i in range(num_polygons):
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if i > 0 and i % 250 == 0:
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logger.logger.info(
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f"Generated {i}/{num_polygons} polygons ({i/num_polygons*100:.0f}%)..."
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)
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requested_vertices = vertex_counts[i]
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polygon, actual_area = generate_random_polygon(
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min_lon,
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min_lat,
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max_lon,
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max_lat,
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min_area_ha=target_areas[i] * 0.9,
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max_area_ha=target_areas[i] * 1.1,
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|
+
vertex_count=requested_vertices,
|
|
447
|
+
)
|
|
448
|
+
|
|
449
|
+
actual_vertex_count = len(list(polygon.exterior.coords)) - 1
|
|
450
|
+
|
|
451
|
+
properties = {
|
|
452
|
+
"internal_id": i + 1,
|
|
453
|
+
"requested_vertices": int(requested_vertices),
|
|
454
|
+
"actual_vertices": int(actual_vertex_count),
|
|
455
|
+
"requested_area_ha": round(target_areas[i], 2),
|
|
456
|
+
"actual_area_ha": round(actual_area, 2),
|
|
457
|
+
}
|
|
458
|
+
|
|
459
|
+
feature = {
|
|
460
|
+
"type": "Feature",
|
|
461
|
+
"properties": properties,
|
|
462
|
+
"geometry": mapping(polygon),
|
|
463
|
+
}
|
|
464
|
+
|
|
465
|
+
features.append(feature)
|
|
466
|
+
|
|
467
|
+
logger.logger.info(f"Generated {num_polygons} polygons!")
|
|
468
|
+
|
|
469
|
+
# Print summary statistics
|
|
470
|
+
actual_vertex_counts = [f["properties"]["actual_vertices"] for f in features]
|
|
471
|
+
requested_vertex_counts = [f["properties"]["requested_vertices"] for f in features]
|
|
472
|
+
|
|
473
|
+
logger.logger.info(
|
|
474
|
+
f"Vertex count - Requested: {min(requested_vertex_counts)}-{max(requested_vertex_counts)}, "
|
|
475
|
+
f"Actual: {min(actual_vertex_counts)}-{max(actual_vertex_counts)}"
|
|
476
|
+
)
|
|
477
|
+
|
|
478
|
+
actual_area_counts = [f["properties"]["actual_area_ha"] for f in features]
|
|
479
|
+
requested_area_counts = [f["properties"]["requested_area_ha"] for f in features]
|
|
480
|
+
|
|
481
|
+
logger.logger.info(
|
|
482
|
+
f"Area (ha) - Requested: {min(requested_area_counts):.1f}-{max(requested_area_counts):.1f}, "
|
|
483
|
+
f"Actual: {min(actual_area_counts):.1f}-{max(actual_area_counts):.1f}"
|
|
484
|
+
)
|
|
485
|
+
|
|
486
|
+
geojson = {"type": "FeatureCollection", "features": features}
|
|
487
|
+
return geojson
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.3
|
|
2
2
|
Name: openforis-whisp
|
|
3
|
-
Version: 2.0.
|
|
3
|
+
Version: 2.0.0b3
|
|
4
4
|
Summary: Whisp (What is in that plot) is an open-source solution which helps to produce relevant forest monitoring information and support compliance with deforestation-related regulations.
|
|
5
5
|
License: MIT
|
|
6
6
|
Keywords: whisp,geospatial,data-processing
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
openforis_whisp/__init__.py,sha256=bnEZ4_X-mJInltSKVI0STfvrb09Df-z21buIVFDif5w,2524
|
|
2
|
+
openforis_whisp/data_conversion.py,sha256=Mc6dXbvoHBeRzl3o83pyKeI5_sPC8Yc90Tj4bN6_Bv8,17519
|
|
3
|
+
openforis_whisp/datasets.py,sha256=hb8Y35vTcQQNUH_z2_l8Pu6Sjn_E8BzSow1-qAfs9bQ,50194
|
|
4
|
+
openforis_whisp/logger.py,sha256=n9k0EhAZYZKesnfskv8KyWnkGbjqRqk84ulx9-u_Jsc,2308
|
|
5
|
+
openforis_whisp/parameters/config_runtime.py,sha256=NOo39MAi60XCwEx5pwkS0EHKJBh0XY1q06y4j0HAABg,1421
|
|
6
|
+
openforis_whisp/parameters/lookup_context_and_metadata.csv,sha256=KgK0ik_Gd4t_Nq5cUkGPT4ZFZVO93HWSG82jRrOukt4,1298
|
|
7
|
+
openforis_whisp/parameters/lookup_gee_datasets.csv,sha256=UDvZrQsL5rXJn6CW6P3wofUrPLRmUFZWt6ETbXaxBMs,17454
|
|
8
|
+
openforis_whisp/pd_schemas.py,sha256=W_ocS773LHfc05dJqvWRa-bRdX0wKFoNp0lMxgFx94Y,2681
|
|
9
|
+
openforis_whisp/reformat.py,sha256=rtkKs8z1mJd5JD9rXuMk1tbbbTvQxCCh68tA4hIQAv8,25445
|
|
10
|
+
openforis_whisp/risk.py,sha256=d_Di5XB8BnHdVXG56xdHTcpB4-CIF5vo2ZRMQRG7Pek,34420
|
|
11
|
+
openforis_whisp/stats.py,sha256=1ikeV8UYpL8O5HZJY8lPXrhQwZ9D1IglbOsagZHCYdA,54000
|
|
12
|
+
openforis_whisp/utils.py,sha256=5HHtbK62Swn4-jnlSe1Jc-hVnJhLKMuDW0_ayHY7mIg,17130
|
|
13
|
+
openforis_whisp-2.0.0b3.dist-info/LICENSE,sha256=nqyqICO95iw_iwzP1t_IIAf7ZX3DPbL_M9WyQfh2q1k,1085
|
|
14
|
+
openforis_whisp-2.0.0b3.dist-info/METADATA,sha256=Opn73PWlsOQWTiwZ-HYvLkrPh4jYQELtSIIqDf4MsoQ,16684
|
|
15
|
+
openforis_whisp-2.0.0b3.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
|
|
16
|
+
openforis_whisp-2.0.0b3.dist-info/RECORD,,
|
|
@@ -1,15 +0,0 @@
|
|
|
1
|
-
"""
|
|
2
|
-
!!! BAD PRACTICE, ALWAYS IMPORT YOUR MODULES EXPLICITELY !!!
|
|
3
|
-
|
|
4
|
-
Module to gather all parameters.
|
|
5
|
-
|
|
6
|
-
If you use a module import all the functions here you only have 1 call to make
|
|
7
|
-
"""
|
|
8
|
-
|
|
9
|
-
# from .config_runtime import *
|
|
10
|
-
|
|
11
|
-
# from .config_asr_url_info import *
|
|
12
|
-
|
|
13
|
-
# from .config_asr_credentials import *
|
|
14
|
-
|
|
15
|
-
# from parameters.config_ceo import *
|
|
@@ -1,17 +0,0 @@
|
|
|
1
|
-
openforis_whisp/__init__.py,sha256=W-uMGp87DCuqJWY31fyYkzDXXZp3g1HOXZoHThJqvJU,2462
|
|
2
|
-
openforis_whisp/data_conversion.py,sha256=_HSjYozNO1xAOAk-uGmzTVCTOc3W7x3GDlvEUgrnj_Q,16909
|
|
3
|
-
openforis_whisp/datasets.py,sha256=gQg-JjcZuCd8-4_J2CN4oNwo-2qwNmKpwS_JV6zf-Jc,51516
|
|
4
|
-
openforis_whisp/logger.py,sha256=n9k0EhAZYZKesnfskv8KyWnkGbjqRqk84ulx9-u_Jsc,2308
|
|
5
|
-
openforis_whisp/parameters/__init__.py,sha256=KL7iORJVjSpZatYjoyWckcmQJnE89_DBC8R6_0_eR6o,349
|
|
6
|
-
openforis_whisp/parameters/config_runtime.py,sha256=NOo39MAi60XCwEx5pwkS0EHKJBh0XY1q06y4j0HAABg,1421
|
|
7
|
-
openforis_whisp/parameters/lookup_context_and_metadata.csv,sha256=KgK0ik_Gd4t_Nq5cUkGPT4ZFZVO93HWSG82jRrOukt4,1298
|
|
8
|
-
openforis_whisp/parameters/lookup_gee_datasets.csv,sha256=rYAMwbd1kwakgucdXrDicJfu4Nvjk8LWBYN7FuIpdDY,17626
|
|
9
|
-
openforis_whisp/pd_schemas.py,sha256=W_ocS773LHfc05dJqvWRa-bRdX0wKFoNp0lMxgFx94Y,2681
|
|
10
|
-
openforis_whisp/reformat.py,sha256=rtkKs8z1mJd5JD9rXuMk1tbbbTvQxCCh68tA4hIQAv8,25445
|
|
11
|
-
openforis_whisp/risk.py,sha256=_YMF-2X1OZXrNMFdNPuJicnG8ktAhlFToJfthWwiRHE,35111
|
|
12
|
-
openforis_whisp/stats.py,sha256=uwyiPXVptpCFSviz-_otXCpHeHnY2IwE2dPwvI7tAAM,45226
|
|
13
|
-
openforis_whisp/utils.py,sha256=ywOl-Hd2FzSYrOVIjtqGaNoZqkI34UChkZMbdjgXWZ0,6492
|
|
14
|
-
openforis_whisp-2.0.0b1.dist-info/LICENSE,sha256=nqyqICO95iw_iwzP1t_IIAf7ZX3DPbL_M9WyQfh2q1k,1085
|
|
15
|
-
openforis_whisp-2.0.0b1.dist-info/METADATA,sha256=NDh_KnflmxTUaA2-w3yTCrZYKFcbgvH8NJu5soe7doc,16684
|
|
16
|
-
openforis_whisp-2.0.0b1.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
|
|
17
|
-
openforis_whisp-2.0.0b1.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|