opencloning 0.5.0.1__py3-none-any.whl → 1.0.0__py3-none-any.whl

opencloning/dna_functions.py

@@ -130,8 +130,8 @@ async def request_from_snapgene(plasmid_set: dict, plasmid_name: str) -> Dseqrec
 async def request_from_addgene(repository_id: str) -> Dseqrecord:
 
     url = f'https://www.addgene.org/{repository_id}/sequences/'
-    async with get_http_client() as client:
-        resp = await client.get(url)
+    async with get_http_client() as addgene_client:
+        resp = await addgene_client.get(url)
     if resp.status_code == 404:
         raise HTTPException(404, 'wrong addgene id')
     soup = BeautifulSoup(resp.content, 'html.parser')
@@ -151,7 +151,14 @@ async def request_from_addgene(repository_id: str) -> Dseqrecord:
             404,
             f'The requested plasmid does not have full sequences, see https://www.addgene.org/{repository_id}/sequences/',
         )
-    dseqr = (await get_sequences_from_file_url(sequence_file_url))[0]
+
+    async with get_http_client() as addgene_client:
+        # For media.addgene.org URLs, we need to first visit www.addgene.org
+        # to get the authentication cookie (__Secure_media_edge_auth)
+        await addgene_client.get('https://www.addgene.org/', follow_redirects=True)
+
+        dseqr = (await get_sequences_from_file_url(sequence_file_url, get_function=addgene_client.get))[0]
+
     dseqr.name = plasmid_name
     dseqr.source = AddgeneIdSource(
         repository_id=repository_id,

opencloning/endpoints/assembly.py

@@ -295,7 +295,7 @@ async def restriction_and_ligation(
         products,
         completed_source,
         source.output_name,
-        no_products_error_message='No compatible restriction-ligation was found.',
+        no_products_error_message=f'No compatible restriction-ligation was found with {", ".join(source.restriction_enzymes)}.',
     )
 
 

{opencloning-0.5.0.1.dist-info → opencloning-1.0.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: opencloning
-Version: 0.5.0.1
+Version: 1.0.0
 Summary: Backend of OpenCloning, a web application to generate molecular cloning strategies in json format, and share them with others.
 License: MIT
 License-File: LICENSE

{opencloning-0.5.0.1.dist-info → opencloning-1.0.0.dist-info}/RECORD

@@ -22,13 +22,13 @@ opencloning/catalogs/openDNA_collections.yaml,sha256=JPnPLJd9ynJkqJAumu0f7-E5E0W
 opencloning/catalogs/readme.txt,sha256=SPBPLfqszGH0zl7EZYddNwi9nE90or82o8aHNMscSkw,87
 opencloning/catalogs/seva.tsv,sha256=FFGZDDgsExYke1S0g_KCzM5YL680_RS-1XNEJbiqFJo,16125
 opencloning/catalogs/snapgene.yaml,sha256=Zi0i4l9KBOhoHnr7i2nYWD58IIYgBbEaNF5m4qzm2ks,47359
-opencloning/dna_functions.py,sha256=vyy2UDyYj3IfVmWf1z07j8T7D53JM-wFQFawcLzZt-k,15967
+opencloning/dna_functions.py,sha256=nxWufh-cnFaffl13tlXE-jrdNWUcPjCX5ez5QMnudgM,16306
 opencloning/dna_utils.py,sha256=n_XRBr9xeEQSoMUWdgH7UigZN2KtU7AxmIwW18aFQdY,6814
 opencloning/ebic/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 opencloning/ebic/primer_design.py,sha256=e_PkEhnlkeV7D3iCeDL8s1p-FkNWj17zWNaq-x9Uz8E,3149
 opencloning/ebic/primer_design_settings.py,sha256=OnFsuh0QCvplUEPXLZouzRo9R7rm4nLbcd2LkDCiIDM,1896
 opencloning/endpoints/annotation.py,sha256=_jQGvwcP-LvoLJKaRG2_YyMLyOzk1R9lUlYNHFc7afY,2126
-opencloning/endpoints/assembly.py,sha256=e6PFNp0ZmAQ7niI54vAZkuTgjTg1NIf0vCnVfebF184,13373
+opencloning/endpoints/assembly.py,sha256=ie90S-5eMmzOtXdnO6IBGBXTP0zSMZANnW3DRRJyTKw,13419
 opencloning/endpoints/endpoint_utils.py,sha256=KIbYA-XPFArHzVTQ8RfxDR4eI3WypOZPJx64_GmjGHY,2061
 opencloning/endpoints/external_import.py,sha256=IdhI1mBvBF77v6DB4Sfc5-RSzW90MzGjTc-zX7aeaxI,19671
 opencloning/endpoints/no_assembly.py,sha256=dOyfh_nfQOmnJx6Vwhwo7EBIIbMRwGf_Ap_VsjSQc40,4031
@@ -45,7 +45,7 @@ opencloning/pydantic_models.py,sha256=cKXRHQyPdQDxkdzEwKgwvmQy0UjFjDVFR-eKIsBSZb
 opencloning/request_examples.py,sha256=rg-v9a5ttzwu5tKY5h3tiT_kVkIZOicS8c01MxrEcEY,2653
 opencloning/temp_functions.py,sha256=wRh26uW_JT9sy3070jIizTT82CE_hS8-GRW3vXEd1GQ,2029
 opencloning/utils.py,sha256=0Lvw1h1AsUJTK2b9mNzYVi_DBeWmWCFA5dIPl_gERcI,1479
-opencloning-0.5.0.1.dist-info/METADATA,sha256=ytZwNVKgGh236RRuKqOPNiCJ4aIHferfBCwej0HlSIg,9505
-opencloning-0.5.0.1.dist-info/WHEEL,sha256=3ny-bZhpXrU6vSQ1UPG34FoxZBp3lVcvK0LkgUz6VLk,88
-opencloning-0.5.0.1.dist-info/licenses/LICENSE,sha256=VSdVE1f8axjIh6gvo9ZZygJdTVkRFMcwCW_hvjOHC_w,1058
-opencloning-0.5.0.1.dist-info/RECORD,,
+opencloning-1.0.0.dist-info/METADATA,sha256=5iVg4G0HOROqemj3rSDC_dadsvNhctW6IufjsSPL5Ko,9503
+opencloning-1.0.0.dist-info/WHEEL,sha256=kJCRJT_g0adfAJzTx2GUMmS80rTJIVHRCfG0DQgLq3o,88
+opencloning-1.0.0.dist-info/licenses/LICENSE,sha256=VSdVE1f8axjIh6gvo9ZZygJdTVkRFMcwCW_hvjOHC_w,1058
+opencloning-1.0.0.dist-info/RECORD,,

{opencloning-0.5.0.1.dist-info → opencloning-1.0.0.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.3.0
+Generator: poetry-core 2.3.1
 Root-Is-Purelib: true
 Tag: py3-none-any