opencloning 0.3.8__py3-none-any.whl → 0.4.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- opencloning/app_settings.py +1 -0
- opencloning/batch_cloning/EBIC/example.py +17 -10
- opencloning/batch_cloning/pombe/pombe_clone.py +35 -43
- opencloning/batch_cloning/pombe/pombe_summary.py +11 -7
- opencloning/batch_cloning/ziqiang_et_al2024/__init__.py +28 -56
- opencloning/batch_cloning/ziqiang_et_al2024/ziqiang_et_al2024.json +47 -56
- opencloning/bug_fixing/README.md +5 -2
- opencloning/bug_fixing/backend_v0_3.py +12 -15
- opencloning/dna_functions.py +5 -6
- opencloning/dna_utils.py +26 -21
- opencloning/endpoints/assembly.py +32 -24
- opencloning/endpoints/no_assembly.py +8 -5
- opencloning/endpoints/no_input.py +11 -4
- opencloning/pydantic_models.py +57 -24
- opencloning/request_examples.py +4 -4
- {opencloning-0.3.8.dist-info → opencloning-0.4.3.dist-info}/METADATA +9 -6
- {opencloning-0.3.8.dist-info → opencloning-0.4.3.dist-info}/RECORD +19 -21
- {opencloning-0.3.8.dist-info → opencloning-0.4.3.dist-info}/WHEEL +1 -1
- opencloning/assembly2.py +0 -1467
- opencloning/batch_cloning/pombe/pombe_all.sh +0 -9
- {opencloning-0.3.8.dist-info → opencloning-0.4.3.dist-info/licenses}/LICENSE +0 -0
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set -e
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# Clear the output directory except for the gene_list.txt
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find batch_cloning_output -type f ! -name 'gene_list.txt' -delete
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find batch_cloning_output -type d -empty -delete
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python pombe_get_primers.py --genes batch_cloning_output/gene_list.txt
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python pombe_clone.py --genes batch_cloning_output/gene_list.txt
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python pombe_summary.py
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python pombe_gather.py
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File without changes
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