omop-lite 0.0.17__py3-none-any.whl → 0.0.18__py3-none-any.whl

omop_lite/db/sqlserver.py

@@ -37,7 +37,7 @@ class SQLServerDatabase(Database):
         with open(str(file_path), "r", encoding="utf-8", newline="") as f:
             reader = csv.reader(f, delimiter=delimiter)
             headers = next(reader)
-            
+
             columns = ", ".join(f"[{col}]" for col in headers)
             placeholders = ", ".join(["?" for _ in headers])
             insert_sql = f"INSERT INTO {settings.schema_name}.[{table_name}] ({columns}) VALUES ({placeholders})"
@@ -46,9 +46,14 @@ class SQLServerDatabase(Database):
             try:
                 cursor = conn.cursor()
                 for line_no, row in enumerate(reader, start=2):
-                    if len(row) != len(headers):
-                        print(f"Row {line_no} skipped: expected {len(headers)} values, got {len(row)} – {row}")
-                        continue
+                    # Pad short rows
+                    if len(row) < len(headers):
+                        row += [None] * (len(headers) - len(row))
+                        logger.info(f"Row {line_no} padded: {row}")
+                    elif len(row) > len(headers):
+                        logger.info(f"Row {line_no} trimmed: too many values ({len(row)}), expected {len(headers)} – trimming.")
+                        row = row[:len(headers)]
+
                     cursor.execute(insert_sql, row)
                 conn.commit()
             finally:

{omop_lite-0.0.17.dist-info → omop_lite-0.0.18.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: omop-lite
-Version: 0.0.17
+Version: 0.0.18
 Summary: Get an OMOP CDM database running quickly.
 License-File: LICENSE
 Requires-Python: >=3.13

{omop_lite-0.0.17.dist-info → omop_lite-0.0.18.dist-info}/RECORD

@@ -3,7 +3,7 @@ omop_lite/settings.py,sha256=234EK12WAHy2aRlahw415qArfBFPWCFa0ANYWt2T15s,641
 omop_lite/db/__init__.py,sha256=Wlu-tkFf2M6jkHJE020dim1ziCGia0cFxS7UOqcE28o,568
 omop_lite/db/base.py,sha256=RA2dMzgB-dkR0R5Rv6HZqnYf726gXGRJ0G9cPGoc-gg,5992
 omop_lite/db/postgres.py,sha256=inURED1rk9LMIWojN7qszQjdj2M3nj0fcMCPB0TPW3o,3083
-omop_lite/db/sqlserver.py,sha256=K_8VZVSR6bqzVMIbY2gRJOxrkY6F16_vzyBCtmYdt04,2361
+omop_lite/db/sqlserver.py,sha256=d-B7W0K96CPTH-HT02i0pljxgb9hVdAfXN-7COiZF4s,2603
 omop_lite/scripts/fts.sql,sha256=PMZOImGgF0Dszqx_0BFPXBDf-7xdzt-klMmOG1wwGQ4,173
 omop_lite/scripts/mssql/constraints.sql,sha256=y_nlWWiyR8EZ_9LtEl4-6qksXplqGT9yUsU_R9w2pZ8,32206
 omop_lite/scripts/mssql/ddl.sql,sha256=kcU2f0n8XIQDAD2uqXicpAwKwkS3801Vos3b2llgQIM,19522
@@ -39,8 +39,8 @@ omop_lite/synthetic/1000/OBSERVATION_PERIOD.csv,sha256=O6YvudsW5AL2sx124hyW1YhP9
 omop_lite/synthetic/1000/PERSON.csv,sha256=ObojT1gFHrpmCnCfjO6G77VBzf-MrBMpRpd8L4wOk_o,113287
 omop_lite/synthetic/1000/PROCEDURE_OCCURRENCE.csv,sha256=iBGRwi6RGysHYBfjQxmEaUDGDqDtSCIN3ABMDRZKPvE,1555130
 omop_lite/synthetic/1000/VISIT_OCCURRENCE.csv,sha256=qYiSW_C4En8u5dKr2sKLzG9rdYjaK72XHUnmtDF8OJs,3863798
-omop_lite-0.0.17.dist-info/METADATA,sha256=kvHtFrY4p9IZ-ZDKdPgj52t25J2QIQJnn-vRiao2NgI,5372
-omop_lite-0.0.17.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-omop_lite-0.0.17.dist-info/entry_points.txt,sha256=2Y60p_74OjOkkEh0EK7yDD5c2blbD-ZGDij8-fVgXdM,45
-omop_lite-0.0.17.dist-info/licenses/LICENSE,sha256=muHgK_sUsFJ3OnDh62vGn2QH4sf_SymtlfFqp8tF9n0,1075
-omop_lite-0.0.17.dist-info/RECORD,,
+omop_lite-0.0.18.dist-info/METADATA,sha256=An_JckIhfQWTVlqJnwiTHIOe1ehyOkakDX5qNumwYu4,5372
+omop_lite-0.0.18.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+omop_lite-0.0.18.dist-info/entry_points.txt,sha256=2Y60p_74OjOkkEh0EK7yDD5c2blbD-ZGDij8-fVgXdM,45
+omop_lite-0.0.18.dist-info/licenses/LICENSE,sha256=muHgK_sUsFJ3OnDh62vGn2QH4sf_SymtlfFqp8tF9n0,1075
+omop_lite-0.0.18.dist-info/RECORD,,