offtracker 2.14.3__zip → 2.14.4__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. {offtracker-2.14.3/offtracker.egg-info → offtracker-2.14.4}/PKG-INFO +1 -1
  2. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/_version.py +2 -2
  3. {offtracker-2.14.3 → offtracker-2.14.4/offtracker.egg-info}/PKG-INFO +1 -1
  4. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker.egg-info/requires.txt +0 -11
  5. {offtracker-2.14.3 → offtracker-2.14.4}/setup.py +1 -1
  6. {offtracker-2.14.3 → offtracker-2.14.4}/LICENSE.txt +0 -0
  7. {offtracker-2.14.3 → offtracker-2.14.4}/MANIFEST.in +0 -0
  8. {offtracker-2.14.3 → offtracker-2.14.4}/README.md +0 -0
  9. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/X_offplot.py +0 -0
  10. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/X_offtracker.py +0 -0
  11. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/X_sequence.py +0 -0
  12. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/__init__.py +0 -0
  13. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/snakefile/Snakefile_QC.smk +0 -0
  14. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
  15. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/1.1_bed2fr.py +0 -0
  16. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
  17. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/bedGraphToBigWig +0 -0
  18. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/hg38.chrom.sizes +0 -0
  19. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/mm10.chrom.sizes +0 -0
  20. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
  21. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
  22. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker.egg-info/SOURCES.txt +0 -0
  23. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker.egg-info/dependency_links.txt +0 -0
  24. {offtracker-2.14.3 → offtracker-2.14.4}/offtracker.egg-info/top_level.txt +0 -0
  25. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_analysis.py +0 -0
  26. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_candidates.py +0 -0
  27. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_config.py +0 -0
  28. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_correction.py +0 -0
  29. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_init.py +0 -0
  30. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_plot.py +0 -0
  31. {offtracker-2.14.3 → offtracker-2.14.4}/scripts/offtracker_qc.py +0 -0
  32. {offtracker-2.14.3 → offtracker-2.14.4}/setup.cfg +0 -0
{offtracker-2.14.3/offtracker.egg-info → offtracker-2.14.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.14.3
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+ Version: 2.14.4
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
{offtracker-2.14.3 → offtracker-2.14.4}/offtracker/_version.py RENAMED
@@ -1,4 +1,4 @@
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- __version__ = "2.14.3"
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+ __version__ = "2.14.4"
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  # 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
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  # 2023.10.26. v1.9.0 prerelease for v2.0
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  # 2023.10.27. v2.0.0 大更新，还没微调
@@ -47,4 +47,4 @@ __version__ = "2.14.3"
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  # 2025.08.09. v2.13.2 chromap + trim 参数
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  # 2025.10.05. v2.14.0 添加 threads 监控，在 offtracker_config.py 中添加 --cpu_help 选项进入互动模式，推荐 CPU 参数。
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  # 2025.10.05. v2.14.1 修正小问题。
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- # 2025.10.06. v2.14.3 修正依赖和bug。
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+ # 2025.10.06. v2.14.4 修正依赖和bug。
{offtracker-2.14.3 → offtracker-2.14.4/offtracker.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.14.3
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+ Version: 2.14.4
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
{offtracker-2.14.3 → offtracker-2.14.4}/offtracker.egg-info/requires.txt RENAMED
@@ -8,14 +8,3 @@ pybedtools
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  pyarrow
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  pyyaml
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  psutil
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- os
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- sys
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- re
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- glob
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- time
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- itertools
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- argparse
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- multiprocessing
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- shutil
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- yaml
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- math
{offtracker-2.14.3 → offtracker-2.14.4}/setup.py RENAMED
@@ -27,7 +27,7 @@ with open(os.path.join(here, package_folder, '_version.py'),'r',encoding='utf-8'
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  # requirements
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  REQUIRED = [
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  'pandas', 'polars>=1.19.0', 'numpy', 'scipy', 'matplotlib', 'biopython<=1.85', 'pybedtools', 'pyarrow', 'pyyaml', 'psutil',
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- 'os','sys','re', 'glob', 'time','itertools','argparse', 'multiprocessing', 'shutil', 'yaml', 'math'
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+ # 'os','sys','re', 'glob', 'time','itertools','argparse', 'multiprocessing', 'shutil', 'yaml', 'math'
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  ]
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  ## pybedtools may be not supported in Windows
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{offtracker-2.14.3 → offtracker-2.14.4}/LICENSE.txt RENAMED
File without changes
{offtracker-2.14.3 → offtracker-2.14.4}/MANIFEST.in RENAMED
File without changes
{offtracker-2.14.3 → offtracker-2.14.4}/README.md RENAMED
File without changes
{offtracker-2.14.3 → offtracker-2.14.4}/setup.cfg RENAMED
File without changes