offtracker 2.14.1__zip → 2.14.2__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. {offtracker-2.14.1/offtracker.egg-info → offtracker-2.14.2}/PKG-INFO +1 -1
  2. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/_version.py +3 -2
  3. {offtracker-2.14.1 → offtracker-2.14.2/offtracker.egg-info}/PKG-INFO +1 -1
  4. offtracker-2.14.2/offtracker.egg-info/requires.txt +20 -0
  5. {offtracker-2.14.1 → offtracker-2.14.2}/setup.py +2 -1
  6. offtracker-2.14.1/offtracker.egg-info/requires.txt +0 -7
  7. {offtracker-2.14.1 → offtracker-2.14.2}/LICENSE.txt +0 -0
  8. {offtracker-2.14.1 → offtracker-2.14.2}/MANIFEST.in +0 -0
  9. {offtracker-2.14.1 → offtracker-2.14.2}/README.md +0 -0
  10. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/X_offplot.py +0 -0
  11. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/X_offtracker.py +0 -0
  12. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/X_sequence.py +0 -0
  13. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/__init__.py +0 -0
  14. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/snakefile/Snakefile_QC.smk +0 -0
  15. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
  16. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/1.1_bed2fr.py +0 -0
  17. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
  18. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/bedGraphToBigWig +0 -0
  19. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/hg38.chrom.sizes +0 -0
  20. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/mm10.chrom.sizes +0 -0
  21. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
  22. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
  23. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker.egg-info/SOURCES.txt +0 -0
  24. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker.egg-info/dependency_links.txt +0 -0
  25. {offtracker-2.14.1 → offtracker-2.14.2}/offtracker.egg-info/top_level.txt +0 -0
  26. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_analysis.py +0 -0
  27. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_candidates.py +0 -0
  28. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_config.py +0 -0
  29. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_correction.py +0 -0
  30. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_init.py +0 -0
  31. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_plot.py +0 -0
  32. {offtracker-2.14.1 → offtracker-2.14.2}/scripts/offtracker_qc.py +0 -0
  33. {offtracker-2.14.1 → offtracker-2.14.2}/setup.cfg +0 -0
{offtracker-2.14.1/offtracker.egg-info → offtracker-2.14.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: offtracker
3
- Version: 2.14.1
3
+ Version: 2.14.2
4
4
  Summary: Tracking-seq data analysis
5
5
  Home-page: https://github.com/Lan-lab/offtracker
6
6
  Author: Runda Xu
{offtracker-2.14.1 → offtracker-2.14.2}/offtracker/_version.py RENAMED
@@ -1,4 +1,4 @@
1
- __version__ = "2.14.1"
1
+ __version__ = "2.14.2"
2
2
  # 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
3
3
  # 2023.10.26. v1.9.0 prerelease for v2.0
4
4
  # 2023.10.27. v2.0.0 大更新，还没微调
@@ -45,5 +45,6 @@ __version__ = "2.14.1"
45
45
  # 2025.08.08. v2.13.0 测试 local realign 功能
46
46
  # 2025.08.09. v2.13.1 测试 correction 功能
47
47
  # 2025.08.09. v2.13.2 chromap + trim 参数
48
- # 2025.10.05. v2.14.0 添加 threads 监控，在 offtracker_config.py 中添加 --cpu_help 选项进入互动模式，推荐 CPU 参数。
48
+ # 2025.10.05. v2.14.0 添加 threads 监控，在 offtracker_config.py 中添加 --cpu_help 选项进入互动模式，推荐 CPU 参数。
49
49
  # 2025.10.05. v2.14.1 修正小问题。
50
+ # 2025.10.06. v2.14.2 修正依赖。
{offtracker-2.14.1 → offtracker-2.14.2/offtracker.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: offtracker
3
- Version: 2.14.1
3
+ Version: 2.14.2
4
4
  Summary: Tracking-seq data analysis
5
5
  Home-page: https://github.com/Lan-lab/offtracker
6
6
  Author: Runda Xu
offtracker-2.14.2/offtracker.egg-info/requires.txt ADDED
@@ -0,0 +1,20 @@
1
+ pandas
2
+ polars>=1.19.0
3
+ numpy
4
+ scipy
5
+ matplotlib
6
+ biopython<=1.85
7
+ pybedtools
8
+ pyyaml
9
+ psutil
10
+ os
11
+ sys
12
+ re
13
+ glob
14
+ time
15
+ itertools
16
+ argparse
17
+ multiprocessing
18
+ shutil
19
+ yaml
20
+ math
{offtracker-2.14.1 → offtracker-2.14.2}/setup.py RENAMED
@@ -26,7 +26,8 @@ with open(os.path.join(here, package_folder, '_version.py'),'r',encoding='utf-8'
26
26
 
27
27
  # requirements
28
28
  REQUIRED = [
29
- 'pandas', 'polars>=1.19.0', 'numpy', 'biopython<=1.85', 'pybedtools', 'pyyaml', 'psutil'
29
+ 'pandas', 'polars>=1.19.0', 'numpy', 'scipy', 'matplotlib', 'biopython<=1.85', 'pybedtools', 'pyyaml', 'psutil',
30
+ 'os','sys','re', 'glob', 'time','itertools','argparse', 'multiprocessing', 'shutil', 'yaml', 'math'
30
31
  ]
31
32
  ## pybedtools may be not supported in Windows
32
33
 
offtracker-2.14.1/offtracker.egg-info/requires.txt DELETED
@@ -1,7 +0,0 @@
1
- pandas
2
- polars>=1.19.0
3
- numpy
4
- biopython<=1.85
5
- pybedtools
6
- pyyaml
7
- psutil
{offtracker-2.14.1 → offtracker-2.14.2}/LICENSE.txt RENAMED
File without changes
{offtracker-2.14.1 → offtracker-2.14.2}/MANIFEST.in RENAMED
File without changes
{offtracker-2.14.1 → offtracker-2.14.2}/README.md RENAMED
File without changes
{offtracker-2.14.1 → offtracker-2.14.2}/setup.cfg RENAMED
File without changes