offtracker 2.12.0__zip → 2.12.2__zip
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {offtracker-2.12.0/offtracker.egg-info → offtracker-2.12.2}/PKG-INFO +1 -1
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/_version.py +2 -2
- {offtracker-2.12.0 → offtracker-2.12.2/offtracker.egg-info}/PKG-INFO +1 -1
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_analysis.py +3 -2
- {offtracker-2.12.0 → offtracker-2.12.2}/LICENSE.txt +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/MANIFEST.in +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/README.md +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/X_offplot.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/X_offtracker.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/X_sequence.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/__init__.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/snakefile/Snakefile_QC.smk +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/1.1_bed2fr.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/bedGraphToBigWig +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/hg38.chrom.sizes +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/mm10.chrom.sizes +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker.egg-info/SOURCES.txt +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker.egg-info/dependency_links.txt +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker.egg-info/requires.txt +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/offtracker.egg-info/top_level.txt +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_candidates.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_config.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_init.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_plot.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/scripts/offtracker_qc.py +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/setup.cfg +0 -0
- {offtracker-2.12.0 → offtracker-2.12.2}/setup.py +0 -0
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__version__ = "2.12.
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__version__ = "2.12.2"
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# 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
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# 2023.10.26. v1.9.0 prerelease for v2.0
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# 2023.10.27. v2.0.0 大更新，还没微调
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@@ -40,4 +40,4 @@ __version__ = "2.12.0"
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# 2025.06.28. v2.10.11 回滚到2.10.9外加修正
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# 2025.07.02. v2.11.4 基于 blast 的缺陷更新 candidates，去除 quick mode
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# 2025.07.04. v2.11.5 offtracker_analysis 提前 skip 已有结果的样本
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# 2025.07.04. v2.12.
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# 2025.07.04. v2.12.2 新增 region_index 标记区域，用于更好的去重
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# -*- coding: utf-8 -*-
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import os,glob,sys,time,shutil
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import polars as pl
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if sys.version_info < (3,0):
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import platform
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# load df_candidate
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try:
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df_candidate =
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df_candidate = pl.read_csv(os.path.join(args.seqfolder,f'df_candidate_{sgRNA_name}.csv')).to_pandas()
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df_candidate.index = df_candidate['target_location']
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df_candidate_brief = df_candidate[['chr','st','ed','best_strand','best_target','best_seq_score',
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'deletion', 'insertion','mismatch', 'GG',
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# df_result = df_score[list_nondup].copy()
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# 2025.07.06 更新去重方式
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df_result = df_score.drop_duplicates(subset=['region_index'], keep='first')
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df_result = df_score.drop_duplicates(subset=['region_index'], keep='first').copy()
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# 标准化分布
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target_std=0.15
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{offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/offtracker_blacklist_hg38.merged.bed
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{offtracker-2.12.0 → offtracker-2.12.2}/offtracker/utility/offtracker_blacklist_mm10.merged.bed
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