offtracker 2.11.1__zip → 2.11.2__zip

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Files changed (31) hide show
  1. {offtracker-2.11.1/offtracker.egg-info → offtracker-2.11.2}/PKG-INFO +1 -1
  2. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/_version.py +2 -2
  3. {offtracker-2.11.1 → offtracker-2.11.2/offtracker.egg-info}/PKG-INFO +1 -1
  4. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_candidates.py +1 -1
  5. {offtracker-2.11.1 → offtracker-2.11.2}/LICENSE.txt +0 -0
  6. {offtracker-2.11.1 → offtracker-2.11.2}/MANIFEST.in +0 -0
  7. {offtracker-2.11.1 → offtracker-2.11.2}/README.md +0 -0
  8. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/X_offplot.py +0 -0
  9. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/X_offtracker.py +0 -0
  10. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/X_sequence.py +0 -0
  11. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/__init__.py +0 -0
  12. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/snakefile/Snakefile_QC.smk +0 -0
  13. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/snakefile/Snakefile_offtracker.smk +0 -0
  14. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/1.1_bed2fr.py +0 -0
  15. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/1.3_bdg_normalize_v4.0.py +0 -0
  16. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/bedGraphToBigWig +0 -0
  17. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/hg38.chrom.sizes +0 -0
  18. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/mm10.chrom.sizes +0 -0
  19. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/offtracker_blacklist_hg38.merged.bed +0 -0
  20. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker/utility/offtracker_blacklist_mm10.merged.bed +0 -0
  21. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker.egg-info/SOURCES.txt +0 -0
  22. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker.egg-info/dependency_links.txt +0 -0
  23. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker.egg-info/requires.txt +0 -0
  24. {offtracker-2.11.1 → offtracker-2.11.2}/offtracker.egg-info/top_level.txt +0 -0
  25. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_analysis.py +0 -0
  26. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_config.py +0 -0
  27. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_init.py +0 -0
  28. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_plot.py +0 -0
  29. {offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_qc.py +0 -0
  30. {offtracker-2.11.1 → offtracker-2.11.2}/setup.cfg +0 -0
  31. {offtracker-2.11.1 → offtracker-2.11.2}/setup.py +0 -0
{offtracker-2.11.1/offtracker.egg-info → offtracker-2.11.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.11.1
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+ Version: 2.11.2
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
{offtracker-2.11.1 → offtracker-2.11.2}/offtracker/_version.py RENAMED
@@ -1,4 +1,4 @@
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- __version__ = "2.11.1"
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+ __version__ = "2.11.2"
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  # 2023.08.11. v1.1.0 adding a option for not normalizing the bw file
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  # 2023.10.26. v1.9.0 prerelease for v2.0
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  # 2023.10.27. v2.0.0 大更新，还没微调
@@ -38,4 +38,4 @@ __version__ = "2.11.1"
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  # 2025.06.28. v2.10.9 现在 pip 都是从 wheel 安装，不再运行 setup.py，所以增加一个 offtracker_init.py
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  # 2025.06.28. v2.10.10 直接塞 script 里试试
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  # 2025.06.28. v2.10.11 回滚到2.10.9外加修正
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- # 2025.07.02. v2.11.1 基于 blast 的缺陷更新 candidates
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+ # 2025.07.02. v2.11.2 基于 blast 的缺陷更新 candidates
{offtracker-2.11.1 → offtracker-2.11.2/offtracker.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: offtracker
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- Version: 2.11.1
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+ Version: 2.11.2
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  Summary: Tracking-seq data analysis
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  Home-page: https://github.com/Lan-lab/offtracker
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  Author: Runda Xu
{offtracker-2.11.1 → offtracker-2.11.2}/scripts/offtracker_candidates.py RENAMED
@@ -143,7 +143,7 @@ def main():
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  # 输出 bed 用于后续 alignment score 计算
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  blast_regions_bed = blast_regions.select(['chr', 'st', 'ed'])
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- blast_regions_bed.write_csv(dir_sgRNA_bed, separator='\t', has_header=False)
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+ blast_regions_bed.write_csv(dir_sgRNA_bed, separator='\t', include_header=False)
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  # 对 bed 进行排序但不合并
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  a = pybedtools.BedTool(dir_sgRNA_bed)
{offtracker-2.11.1 → offtracker-2.11.2}/LICENSE.txt RENAMED
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{offtracker-2.11.1 → offtracker-2.11.2}/MANIFEST.in RENAMED
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{offtracker-2.11.1 → offtracker-2.11.2}/README.md RENAMED
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{offtracker-2.11.1 → offtracker-2.11.2}/setup.cfg RENAMED
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{offtracker-2.11.1 → offtracker-2.11.2}/setup.py RENAMED
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