offtracker 2.10.8__zip → 2.10.9__zip

{offtracker-2.10.8/offtracker.egg-info → offtracker-2.10.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: offtracker
-Version: 2.10.8
+Version: 2.10.9
 Summary: Tracking-seq data analysis
 Home-page: https://github.com/Lan-lab/offtracker
 Author: Runda Xu

{offtracker-2.10.8 → offtracker-2.10.9}/offtracker/_version.py

@@ -1,4 +1,4 @@
-__version__ = "2.10.8"
+__version__ = "2.10.9"
 # 2023.08.11. v1.1.0	adding a option for not normalizing the bw file
 # 2023.10.26. v1.9.0	prerelease for v2.0
 # 2023.10.27. v2.0.0	大更新，还没微调
@@ -34,4 +34,5 @@ __version__ = "2.10.8"
 # 2025.05.22. v2.9.0	翻新部分代码结构
 # 2025.06.05. v2.10.0	增加了QC模块。保留了负数score的记录，并在plot时显示为红字。增加了 "--ignore_chr" 用于跳过common chr过滤。
 # 2025.06.17. v2.10.7   修复翻新代码结构导致的bug
-# 2025.06.27. v2.10.8   将 chmod 放在了 setup.py 里
+# 2025.06.27. v2.10.8   将 chmod 放在了 setup.py 里
+# 2025.06.28. v2.10.9   现在 pip 都是从 wheel 安装，不再运行 setup.py，所以增加一个 offtracker_init.py

{offtracker-2.10.8 → offtracker-2.10.9/offtracker.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: offtracker
-Version: 2.10.8
+Version: 2.10.9
 Summary: Tracking-seq data analysis
 Home-page: https://github.com/Lan-lab/offtracker
 Author: Runda Xu

{offtracker-2.10.8 → offtracker-2.10.9}/offtracker.egg-info/SOURCES.txt

@@ -24,5 +24,6 @@ offtracker/utility/offtracker_blacklist_mm10.merged.bed
 scripts/offtracker_analysis.py
 scripts/offtracker_candidates.py
 scripts/offtracker_config.py
+scripts/offtracker_init.py
 scripts/offtracker_plot.py
 scripts/offtracker_qc.py

{offtracker-2.10.8 → offtracker-2.10.9}/scripts/offtracker_config.py

@@ -13,7 +13,10 @@ import offtracker
 import offtracker.X_sequence as xseq
 script_dir = os.path.abspath(os.path.dirname(offtracker.__file__))
 utility_dir = os.path.join(script_dir, 'utility')
-# os.chmod( os.path.join(utility_dir, 'bedGraphToBigWig'), 0o755)
+try:
+    os.chmod( os.path.join(utility_dir, 'bedGraphToBigWig'), 0o755)
+except:
+    print('offtracker may be installed in root but not initialized. Please run "offtracker_init.py" with root permission first.')
 
 ###
 parser = argparse.ArgumentParser()

offtracker-2.10.9/scripts/offtracker_init.py

@@ -0,0 +1,11 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import os
+from importlib_metadata import distribution
+
+dist = distribution('offtracker')
+package_path = dist.locate_file('')
+utility_dir = os.path.join(package_path, 'offtracker/utility')
+os.chmod( os.path.join(utility_dir, 'bedGraphToBigWig'), 0o755)
+print('offtracker is initialized.')

{offtracker-2.10.8 → offtracker-2.10.9}/scripts/offtracker_qc.py

@@ -12,7 +12,10 @@ import offtracker.X_sequence as xseq
 
 script_dir = os.path.abspath(os.path.dirname(offtracker.__file__))
 utility_dir = os.path.join(script_dir, 'utility')
-# os.chmod( os.path.join(utility_dir, 'bedGraphToBigWig'), 0o755)
+try:
+    os.chmod( os.path.join(utility_dir, 'bedGraphToBigWig'), 0o755)
+except:
+    print('offtracker may be installed in root but not initialized. Please run "offtracker_init.py" with root permission first.')
 
 ###
 parser = argparse.ArgumentParser()

{offtracker-2.10.8 → offtracker-2.10.9}/setup.py

@@ -41,8 +41,6 @@ except FileNotFoundError:
     long_description = DESCRIPTION
 
 
-
-
 class PostInstallCommand(install):
     def run(self):
         install.run(self)
@@ -77,7 +75,8 @@ setup(
         'install': PostInstallCommand,
         'develop': PostDevelopCommand,
     },
-    scripts = ['scripts/offtracker_qc.py',
+    scripts = ['scripts/offtracker_init.py',
+               'scripts/offtracker_qc.py',
                'scripts/offtracker_config.py',
                'scripts/offtracker_candidates.py',
                'scripts/offtracker_analysis.py',