oceanarray 0.1.0__py3-none-any.whl

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Files changed (76) hide show
  1. oceanarray/__init__.py +20 -0
  2. oceanarray/_version.py +1 -0
  3. oceanarray/cli.py +1343 -0
  4. oceanarray/clock_offset.py +675 -0
  5. oceanarray/config/OS1_sensor_attrs.yaml +49 -0
  6. oceanarray/config/OS1_var_names.yaml +5 -0
  7. oceanarray/config/OS1_vocab_attrs.yaml +84 -0
  8. oceanarray/config/legacy/project_RAPID.yaml +69 -0
  9. oceanarray/config/legacy/rodb_keys.txt +206 -0
  10. oceanarray/config/legacy/rodb_keys.yaml +1012 -0
  11. oceanarray/config/logging.yaml +28 -0
  12. oceanarray/legacy/__init__.py +47 -0
  13. oceanarray/legacy/caldip.py +753 -0
  14. oceanarray/legacy/convertOS.py +527 -0
  15. oceanarray/legacy/find_deployment.py +489 -0
  16. oceanarray/legacy/mooring_rodb.py +429 -0
  17. oceanarray/legacy/process_rodb.py +369 -0
  18. oceanarray/legacy/rodb.py +330 -0
  19. oceanarray/logger.py +192 -0
  20. oceanarray/logsheet/__init__.py +60 -0
  21. oceanarray/logsheet/_columns.py +97 -0
  22. oceanarray/logsheet/_config.py +245 -0
  23. oceanarray/logsheet/_firmware.py +43 -0
  24. oceanarray/logsheet/_latex.py +128 -0
  25. oceanarray/logsheet/_render.py +126 -0
  26. oceanarray/logsheet/builders/__init__.py +13 -0
  27. oceanarray/logsheet/builders/caldip_download.py +195 -0
  28. oceanarray/logsheet/builders/caldip_setup.py +188 -0
  29. oceanarray/logsheet/builders/deployment_setup.py +218 -0
  30. oceanarray/logsheet/builders/mooring_download.py +243 -0
  31. oceanarray/logsheet/builders/recovery.py +157 -0
  32. oceanarray/logsheet/data/column_defs.yaml +686 -0
  33. oceanarray/logsheet/data/latex_templates/_base_instrument.tex.j2 +42 -0
  34. oceanarray/logsheet/data/latex_templates/caldip_download.tex.j2 +47 -0
  35. oceanarray/logsheet/data/latex_templates/caldip_setup.tex.j2 +70 -0
  36. oceanarray/logsheet/data/latex_templates/deployment_setup.tex.j2 +97 -0
  37. oceanarray/logsheet/data/latex_templates/mooring_download.tex.j2 +54 -0
  38. oceanarray/logsheet/data/latex_templates/recovery.tex.j2 +103 -0
  39. oceanarray/mooring_level.py +1368 -0
  40. oceanarray/oceanarray.mplstyle +18 -0
  41. oceanarray/parameters.py +270 -0
  42. oceanarray/plotter.py +942 -0
  43. oceanarray/plotters/__init__.py +97 -0
  44. oceanarray/plotters/_animation.py +261 -0
  45. oceanarray/plotters/_current.py +705 -0
  46. oceanarray/plotters/_diagnostic.py +667 -0
  47. oceanarray/plotters/_helpers.py +57 -0
  48. oceanarray/plotters/_primitives.py +101 -0
  49. oceanarray/plotters/_section.py +16 -0
  50. oceanarray/plotters/_timeseries.py +11 -0
  51. oceanarray/rapid_interp.py +739 -0
  52. oceanarray/read_rbr_hex.py +541 -0
  53. oceanarray/readers.py +303 -0
  54. oceanarray/report/__init__.py +5 -0
  55. oceanarray/report/_array.py +386 -0
  56. oceanarray/report/_grid.py +539 -0
  57. oceanarray/report/_html_helpers.py +1004 -0
  58. oceanarray/report/_instrument.py +853 -0
  59. oceanarray/report/_mooring.py +1385 -0
  60. oceanarray/report/_plots.py +4284 -0
  61. oceanarray/report/_stack.py +941 -0
  62. oceanarray/stage1.py +1959 -0
  63. oceanarray/stage2.py +1160 -0
  64. oceanarray/stage3.py +2494 -0
  65. oceanarray/time_gridding.py +958 -0
  66. oceanarray/tools.py +400 -0
  67. oceanarray/transports.py +1 -0
  68. oceanarray/utilities.py +538 -0
  69. oceanarray/validation.py +389 -0
  70. oceanarray/writers.py +99 -0
  71. oceanarray-0.1.0.dist-info/METADATA +503 -0
  72. oceanarray-0.1.0.dist-info/RECORD +76 -0
  73. oceanarray-0.1.0.dist-info/WHEEL +5 -0
  74. oceanarray-0.1.0.dist-info/entry_points.txt +2 -0
  75. oceanarray-0.1.0.dist-info/licenses/LICENSE +21 -0
  76. oceanarray-0.1.0.dist-info/top_level.txt +1 -0
@@ -0,0 +1,28 @@
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+ # Global logging configuration for oceanarray processing stages
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+ #
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+ # This configuration file controls where and how log files are created
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+ # for all processing stages (stage1, stage2, time_gridding, etc.)
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+
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+ logging:
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+ # Directory for log files
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+ # - Can be relative path (created within each mooring's proc directory)
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+ # - Can be absolute path for centralized logging
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+ # - Default: "processing_logs" creates ~/moor/proc/<mooring_name>/processing_logs/
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+ directory: "processing_logs"
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+
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+ # Log filename pattern
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+ # Available variables:
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+ # {mooring_name} - Name of the mooring (e.g., dsE_1_2018)
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+ # {timestamp} - Formatted timestamp
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+ # {stage} - Processing stage name (stage1, stage2, time_gridding)
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+ filename_pattern: "{mooring_name}_{timestamp}_{stage}.log"
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+
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+ # Timestamp format for log filenames
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+ # Uses Python strftime format codes:
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+ # %Y = 4-digit year %m = month %d = day
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+ # %H = hour (24hr) %M = minute %S = second
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+ # Default: "%Y%m%dT%H" produces YYYYMMDTHH (e.g., 20180827T14)
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+ timestamp_format: "%Y%m%dT%H"
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+
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+ # Whether to create the log directory if it doesn't exist
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+ create_directory: true
@@ -0,0 +1,47 @@
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+ """Legacy RODB/RAPID format processing functions.
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+
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+ This module contains legacy code for processing RAPID/RODB format data.
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+ For new projects, use the modern CF-compliant workflow:
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+ Stage1 (stage1.py) -> Stage2 (stage2.py) -> Time Gridding (time_gridding.py)
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+
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+ Legacy modules:
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+ - process_rodb: Individual instrument processing functions
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+ - mooring_rodb: Mooring-level stacking and filtering functions
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+ - rodb: RODB format data reader
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+ """
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+
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+ from .convertOS import *
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+ from .mooring_rodb import *
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+
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+ # Import all legacy functionality for backward compatibility
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+ from .process_rodb import *
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+ from .rodb import *
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+
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+ __all__ = [
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+ # From process_rodb
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+ "process_instrument",
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+ "process_microcat",
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+ "normalize_dataset_by_middle_percent",
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+ "normalize_by_middle_percent",
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+ "middle_percent",
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+ "mean_of_middle_percent",
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+ "std_of_middle_percent",
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+ # From mooring_rodb
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+ "combine_mooring_OS",
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+ "find_time_vars",
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+ "find_common_attributes",
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+ "stack_instruments",
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+ "interp_to_12hour_grid",
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+ "get_12hourly_time_grid",
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+ "filter_all_time_vars",
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+ "auto_filt",
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+ # From rodb
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+ "is_rodb_file",
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+ "rodbload",
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+ "rodbsave",
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+ "format_latlon",
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+ "parse_rodb_keys_file",
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+ # From convertOS
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+ "convert_to_oceansites",
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+ "load_os_config",
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+ ]