obliquetree 1.0.3__cp312-cp312-macosx_11_0_arm64.whl → 1.0.4__cp312-cp312-macosx_11_0_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- obliquetree/__init__.py +1 -1
- obliquetree/src/base.cpp +371 -331
- obliquetree/src/base.cpython-312-darwin.so +0 -0
- obliquetree/src/ccp.cpp +109 -74
- obliquetree/src/ccp.cpython-312-darwin.so +0 -0
- obliquetree/src/metric.cpp +263 -219
- obliquetree/src/metric.cpython-312-darwin.so +0 -0
- obliquetree/src/oblique.cpp +377 -342
- obliquetree/src/oblique.cpython-312-darwin.so +0 -0
- obliquetree/src/tree.cpp +609 -565
- obliquetree/src/tree.cpython-312-darwin.so +0 -0
- obliquetree/src/utils.cpp +160 -120
- obliquetree/src/utils.cpython-312-darwin.so +0 -0
- {obliquetree-1.0.3.dist-info → obliquetree-1.0.4.dist-info}/METADATA +1 -1
- obliquetree-1.0.4.dist-info/RECORD +21 -0
- obliquetree-1.0.3.dist-info/RECORD +0 -21
- {obliquetree-1.0.3.dist-info → obliquetree-1.0.4.dist-info}/WHEEL +0 -0
- {obliquetree-1.0.3.dist-info → obliquetree-1.0.4.dist-info}/licenses/LICENSE +0 -0
- {obliquetree-1.0.3.dist-info → obliquetree-1.0.4.dist-info}/top_level.txt +0 -0
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obliquetree/src/ccp.cpp
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@@ -1,4 +1,4 @@
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/* Generated by Cython 3.1.
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1
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/* Generated by Cython 3.1.6 */
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/* BEGIN: Cython Metadata
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{
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@@ -19,7 +19,7 @@
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"-std=c++17"
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],
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"include_dirs": [
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"/private/var/folders/
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"/private/var/folders/xc/cl1fyykn2pj4ryhdw6r1mqtc0000gn/T/build-env-ddeujurx/lib/python3.12/site-packages/numpy/_core/include"
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],
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"language": "c++",
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"name": "obliquetree.src.ccp",
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#define PY_SSIZE_T_CLEAN
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#endif /* PY_SSIZE_T_CLEAN */
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/* InitLimitedAPI */
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#if defined(Py_LIMITED_API)
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#endif
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#elif defined(CYTHON_LIMITED_API)
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#ifdef _MSC_VER
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#pragma message ("Limited API usage is enabled with 'CYTHON_LIMITED_API' but 'Py_LIMITED_API' does not define a Python target version. Consider setting 'Py_LIMITED_API' instead.")
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#else
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#warning Limited API usage is enabled with 'CYTHON_LIMITED_API' but 'Py_LIMITED_API' does not define a Python target version. Consider setting 'Py_LIMITED_API' instead.
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#endif
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#define __PYX_ABI_VERSION "3_1_6"
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#define CYTHON_FUTURE_DIVISION 1
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enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
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#define
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};
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static PyTypeObject *__Pyx_ImportType_3_1_6(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_1_6 check_size);
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if (PyObject_SetAttr(__pyx_m, __pyx_mstate_global->__pyx_n_u_name_2, __pyx_mstate_global->__pyx_n_u_main) < (0)) __PYX_ERR(0, 1, __pyx_L1_error)
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{
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|
PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
|
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@@ -19031,10 +19043,10 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
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}
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}
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/*--- Builtin init code ---*/
|
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-
if (__Pyx_InitCachedBuiltins(__pyx_mstate) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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+
if (__Pyx_InitCachedBuiltins(__pyx_mstate) < (0)) __PYX_ERR(0, 1, __pyx_L1_error)
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|
/*--- Constants init code ---*/
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|
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if (__Pyx_InitCachedConstants(__pyx_mstate) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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if (__Pyx_CreateCodeObjects(__pyx_mstate) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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|
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if (__Pyx_InitCachedConstants(__pyx_mstate) < (0)) __PYX_ERR(0, 1, __pyx_L1_error)
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|
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if (__Pyx_CreateCodeObjects(__pyx_mstate) < (0)) __PYX_ERR(0, 1, __pyx_L1_error)
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|
/*--- Global type/function init code ---*/
|
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|
(void)__Pyx_modinit_global_init_code(__pyx_mstate);
|
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|
(void)__Pyx_modinit_variable_export_code(__pyx_mstate);
|
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@@ -19185,7 +19197,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
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|
*/
|
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|
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_collections_abc_Sequence, __pyx_mstate_global->__pyx_n_u_count); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 240, __pyx_L10_error)
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_array_type, __pyx_mstate_global->__pyx_n_u_count, __pyx_t_5) < 0) __PYX_ERR(1, 240, __pyx_L10_error)
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|
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_array_type, __pyx_mstate_global->__pyx_n_u_count, __pyx_t_5) < (0)) __PYX_ERR(1, 240, __pyx_L10_error)
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|
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|
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/* "View.MemoryView":241
|
|
@@ -19197,7 +19209,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
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|
*/
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__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_collections_abc_Sequence, __pyx_mstate_global->__pyx_n_u_index); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 241, __pyx_L10_error)
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_array_type, __pyx_mstate_global->__pyx_n_u_index, __pyx_t_5) < 0) __PYX_ERR(1, 241, __pyx_L10_error)
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_array_type, __pyx_mstate_global->__pyx_n_u_index, __pyx_t_5) < (0)) __PYX_ERR(1, 241, __pyx_L10_error)
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/* "View.MemoryView":239
|
|
@@ -19407,7 +19419,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
|
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|
*/
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|
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_collections_abc_Sequence, __pyx_mstate_global->__pyx_n_u_count); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 983, __pyx_L18_error)
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-
if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_memoryviewslice_type, __pyx_mstate_global->__pyx_n_u_count, __pyx_t_5) < 0) __PYX_ERR(1, 983, __pyx_L18_error)
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|
+
if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_memoryviewslice_type, __pyx_mstate_global->__pyx_n_u_count, __pyx_t_5) < (0)) __PYX_ERR(1, 983, __pyx_L18_error)
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__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
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/* "View.MemoryView":984
|
|
@@ -19419,7 +19431,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
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*/
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__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_collections_abc_Sequence, __pyx_mstate_global->__pyx_n_u_index); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 984, __pyx_L18_error)
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_memoryviewslice_type, __pyx_mstate_global->__pyx_n_u_index, __pyx_t_5) < 0) __PYX_ERR(1, 984, __pyx_L18_error)
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|
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|
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if (__Pyx_SetItemOnTypeDict(__pyx_mstate_global->__pyx_memoryviewslice_type, __pyx_mstate_global->__pyx_n_u_index, __pyx_t_5) < (0)) __PYX_ERR(1, 984, __pyx_L18_error)
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|
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/* "View.MemoryView":982
|
|
@@ -19574,7 +19586,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
|
|
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|
*/
|
|
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|
__pyx_t_5 = PyCFunction_NewEx(&__pyx_mdef_15View_dot_MemoryView_1__pyx_unpickle_Enum, NULL, __pyx_mstate_global->__pyx_n_u_View_MemoryView); if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 1, __pyx_L1_error)
|
|
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|
|
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|
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if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pyx_unpickle_Enum, __pyx_t_5) < 0) __PYX_ERR(1, 1, __pyx_L1_error)
|
|
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|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pyx_unpickle_Enum, __pyx_t_5) < (0)) __PYX_ERR(1, 1, __pyx_L1_error)
|
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|
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|
|
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|
|
|
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|
/* "obliquetree/src/ccp.pyx":1
|
|
@@ -19584,7 +19596,7 @@ __Pyx_RefNannySetupContext("PyInit_ccp", 0);
|
|
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|
*/
|
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|
__pyx_t_5 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1, __pyx_L1_error)
|
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|
|
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if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_test, __pyx_t_5) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
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|
+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_test, __pyx_t_5) < (0)) __PYX_ERR(0, 1, __pyx_L1_error)
|
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|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
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|
/*--- Wrapped vars code ---*/
|
|
@@ -19921,7 +19933,7 @@ __Pyx_PyTuple_FromArray(PyObject *const *src, Py_ssize_t n)
|
|
|
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res = PyTuple_New(n);
|
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|
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|
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|
for (i = 0; i < n; i++) {
|
|
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if (unlikely(__Pyx_PyTuple_SET_ITEM(res, i, src[i]) < 0)) {
|
|
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|
+
if (unlikely(__Pyx_PyTuple_SET_ITEM(res, i, src[i]) < (0))) {
|
|
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|
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|
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|
return NULL;
|
|
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|
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|
|
@@ -22772,6 +22784,7 @@ static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject
|
|
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|
changed = 1;
|
|
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|
}
|
|
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|
#endif // CYTHON_METH_FASTCALL
|
|
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|
+
#if !CYTHON_COMPILING_IN_PYPY
|
|
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|
else if (strcmp(memb->name, "__module__") == 0) {
|
|
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|
PyObject *descr;
|
|
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|
assert(memb->type == T_OBJECT);
|
|
@@ -22786,11 +22799,13 @@ static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject
|
|
|
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|
}
|
|
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|
changed = 1;
|
|
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|
}
|
|
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|
+
#endif // !CYTHON_COMPILING_IN_PYPY
|
|
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|
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|
|
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|
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|
|
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|
}
|
|
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|
}
|
|
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|
#endif // !CYTHON_COMPILING_IN_LIMITED_API
|
|
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|
+
#if !CYTHON_COMPILING_IN_PYPY
|
|
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|
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|
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|
while (slot && slot->slot && slot->slot != Py_tp_getset)
|
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|
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|
|
@@ -22822,6 +22837,7 @@ static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject
|
|
|
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|
++getset;
|
|
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|
}
|
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|
}
|
|
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|
+
#endif // !CYTHON_COMPILING_IN_PYPY
|
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|
if (changed)
|
|
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|
PyType_Modified(type);
|
|
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|
#endif // PY_VERSION_HEX > 0x030900B1
|
|
@@ -22926,6 +22942,13 @@ try_unpack:
|
|
|
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|
|
|
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|
/* PyObjectCallMethod0 */
|
|
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|
static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
|
|
22945
|
+
#if CYTHON_VECTORCALL && (__PYX_LIMITED_VERSION_HEX >= 0x030C0000 || (!CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX >= 0x03090000))
|
|
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|
+
PyObject *args[1] = {obj};
|
|
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|
+
(void) __Pyx_PyObject_GetMethod;
|
|
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|
+
(void) __Pyx_PyObject_CallOneArg;
|
|
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|
+
(void) __Pyx_PyObject_CallNoArg;
|
|
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|
+
return PyObject_VectorcallMethod(method_name, args, 1 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL);
|
|
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|
+
#else
|
|
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|
PyObject *method = NULL, *result = NULL;
|
|
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|
int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
|
|
22931
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|
if (likely(is_method)) {
|
|
@@ -22938,6 +22961,7 @@ static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name
|
|
|
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|
Py_DECREF(method);
|
|
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|
bad:
|
|
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|
return result;
|
|
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|
+
#endif
|
|
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|
}
|
|
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|
|
|
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|
/* ValidateBasesTuple */
|
|
@@ -23367,15 +23391,15 @@ __PYX_GOOD:
|
|
|
23367
23391
|
}
|
|
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|
|
|
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|
/* TypeImport */
|
|
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|
-
#ifndef
|
|
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|
-
#define
|
|
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|
-
static PyTypeObject *
|
|
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|
-
size_t size, size_t alignment, enum
|
|
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|
+
#ifndef __PYX_HAVE_RT_ImportType_3_1_6
|
|
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|
+
#define __PYX_HAVE_RT_ImportType_3_1_6
|
|
23396
|
+
static PyTypeObject *__Pyx_ImportType_3_1_6(PyObject *module, const char *module_name, const char *class_name,
|
|
23397
|
+
size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_1_6 check_size)
|
|
23374
23398
|
{
|
|
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23399
|
PyObject *result = 0;
|
|
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23400
|
Py_ssize_t basicsize;
|
|
23377
23401
|
Py_ssize_t itemsize;
|
|
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|
-
#if CYTHON_COMPILING_IN_LIMITED_API
|
|
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|
+
#if defined(Py_LIMITED_API) || (defined(CYTHON_COMPILING_IN_LIMITED_API) && CYTHON_COMPILING_IN_LIMITED_API)
|
|
23379
23403
|
PyObject *py_basicsize;
|
|
23380
23404
|
PyObject *py_itemsize;
|
|
23381
23405
|
#endif
|
|
@@ -23388,7 +23412,7 @@ static PyTypeObject *__Pyx_ImportType_3_1_2(PyObject *module, const char *module
|
|
|
23388
23412
|
module_name, class_name);
|
|
23389
23413
|
goto bad;
|
|
23390
23414
|
}
|
|
23391
|
-
#if !CYTHON_COMPILING_IN_LIMITED_API
|
|
23415
|
+
#if !( defined(Py_LIMITED_API) || (defined(CYTHON_COMPILING_IN_LIMITED_API) && CYTHON_COMPILING_IN_LIMITED_API) )
|
|
23392
23416
|
basicsize = ((PyTypeObject *)result)->tp_basicsize;
|
|
23393
23417
|
itemsize = ((PyTypeObject *)result)->tp_itemsize;
|
|
23394
23418
|
#else
|
|
@@ -23426,7 +23450,7 @@ static PyTypeObject *__Pyx_ImportType_3_1_2(PyObject *module, const char *module
|
|
|
23426
23450
|
module_name, class_name, size, basicsize+itemsize);
|
|
23427
23451
|
goto bad;
|
|
23428
23452
|
}
|
|
23429
|
-
if (check_size ==
|
|
23453
|
+
if (check_size == __Pyx_ImportType_CheckSize_Error_3_1_6 &&
|
|
23430
23454
|
((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) {
|
|
23431
23455
|
PyErr_Format(PyExc_ValueError,
|
|
23432
23456
|
"%.200s.%.200s size changed, may indicate binary incompatibility. "
|
|
@@ -23434,7 +23458,7 @@ static PyTypeObject *__Pyx_ImportType_3_1_2(PyObject *module, const char *module
|
|
|
23434
23458
|
module_name, class_name, size, basicsize, basicsize+itemsize);
|
|
23435
23459
|
goto bad;
|
|
23436
23460
|
}
|
|
23437
|
-
else if (check_size ==
|
|
23461
|
+
else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_1_6 && (size_t)basicsize > size) {
|
|
23438
23462
|
if (PyErr_WarnFormat(NULL, 0,
|
|
23439
23463
|
"%.200s.%.200s size changed, may indicate binary incompatibility. "
|
|
23440
23464
|
"Expected %zd from C header, got %zd from PyObject",
|
|
@@ -25350,6 +25374,17 @@ static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
|
|
|
25350
25374
|
static CYTHON_INLINE PyObject * __Pyx_PyLong_FromSize_t(size_t ival) {
|
|
25351
25375
|
return PyLong_FromSize_t(ival);
|
|
25352
25376
|
}
|
|
25377
|
+
#if CYTHON_USE_PYLONG_INTERNALS
|
|
25378
|
+
static CYTHON_INLINE int __Pyx_PyLong_CompactAsLong(PyObject *x, long *return_value) {
|
|
25379
|
+
if (unlikely(!__Pyx_PyLong_IsCompact(x)))
|
|
25380
|
+
return 0;
|
|
25381
|
+
Py_ssize_t value = __Pyx_PyLong_CompactValue(x);
|
|
25382
|
+
if ((sizeof(long) < sizeof(Py_ssize_t)) && unlikely(value != (long) value))
|
|
25383
|
+
return 0;
|
|
25384
|
+
*return_value = (long) value;
|
|
25385
|
+
return 1;
|
|
25386
|
+
}
|
|
25387
|
+
#endif
|
|
25353
25388
|
|
|
25354
25389
|
|
|
25355
25390
|
/* MultiPhaseInitModuleState */
|
|
Binary file
|