ob-metaflow 2.15.21.1__py2.py3-none-any.whl → 2.16.1.1__py2.py3-none-any.whl

metaflow/packaging_sys/v1.py

@@ -0,0 +1,480 @@
+import json
+import os
+import sys
+from pathlib import Path
+from types import ModuleType
+from typing import Any, Callable, Dict, Generator, List, Optional, Set, Tuple, Union
+
+from ..debug import debug
+from ..extension_support import (
+    EXT_EXCLUDE_SUFFIXES,
+    extension_info,
+    package_mfext_all,
+    package_mfext_all_descriptions,
+)
+from ..exception import MetaflowException
+from ..metaflow_version import get_version
+from ..user_decorators.user_flow_decorator import FlowMutatorMeta
+from ..user_decorators.user_step_decorator import UserStepDecoratorMeta
+from ..util import get_metaflow_root
+from . import ContentType, MFCONTENT_MARKER, MetaflowCodeContentV1Base
+from .distribution_support import _ModuleInfo, modules_to_distributions
+from .utils import suffix_filter, walk
+
+
+class MetaflowCodeContentV1(MetaflowCodeContentV1Base):
+    METAFLOW_SUFFIXES_LIST = [".py", ".html", ".css", ".js"]
+
+    def __init__(
+        self,
+        code_dir: str = MetaflowCodeContentV1Base._code_dir,
+        other_dir: str = MetaflowCodeContentV1Base._other_dir,
+        criteria: Callable[[ModuleType], bool] = lambda x: True,
+    ):
+        super().__init__(code_dir, other_dir)
+
+        self._metaflow_root = get_metaflow_root()
+        self._metaflow_version = get_version()
+
+        self._criteria = criteria
+
+        # We try to find the modules we need to package. We will first look at all modules
+        # and apply the criteria to them. Then we will use the most parent module that
+        # fits the criteria as the module to package
+
+        # Make a copy since sys.modules could be modified while we load other
+        # modules. See https://github.com/Netflix/metaflow/issues/2489
+        all_modules = dict(sys.modules)
+        modules = filter(lambda x: criteria(x[1]), all_modules.items())
+        # Ensure that we see the parent modules first
+        modules = sorted(modules, key=lambda x: x[0])
+        if modules:
+            last_prefix = modules[0][0]
+            new_modules = [modules[0]]
+            for name, mod in modules[1:]:
+                if name.startswith(last_prefix + "."):
+                    # This is a submodule of the last module, we can skip it
+                    continue
+                # Otherwise, we have a new top-level module
+                last_prefix = name
+                new_modules.append((name, mod))
+        else:
+            new_modules = []
+
+        self._modules = {
+            name: _ModuleInfo(
+                name,
+                set(
+                    Path(p).resolve().as_posix()
+                    for p in getattr(mod, "__path__", [mod.__file__])
+                ),
+                mod,
+                True,  # This is a Metaflow module (see filter below)
+            )
+            for (name, mod) in new_modules
+        }
+
+        # Filter the modules
+        self._modules = {
+            name: info for name, info in self._modules.items() if criteria(info.module)
+        }
+
+        # Contain metadata information regarding the distributions packaged.
+        # This allows Metaflow to "fake" distribution information when packaged
+        self._distmetainfo = {}  # type: Dict[str, Dict[str, str]]
+
+        # Maps an absolute path on the filesystem to the path of the file in the
+        # archive.
+        self._files = {}  # type: Dict[str, str]
+        self._files_from_modules = {}  # type: Dict[str, str]
+
+        self._other_files = {}  # type: Dict[str, str]
+        self._other_content = {}  # type: Dict[str, bytes]
+
+        debug.package_exec(f"Used system modules found: {str(self._modules)}")
+
+        # Populate with files from the third party modules
+        for k, v in self._modules.items():
+            self._files_from_modules.update(self._module_files(k, v.root_paths))
+
+        # Figure out the files to package for Metaflow and extensions
+        self._cached_metaflow_files = list(self._metaflow_distribution_files())
+        self._cached_metaflow_files.extend(list(self._metaflow_extension_files()))
+
+    def create_mfcontent_info(self) -> Dict[str, Any]:
+        return {"version": 1, "module_files": list(self._files_from_modules.values())}
+
+    def get_excluded_tl_entries(self) -> List[str]:
+        """
+        When packaging Metaflow from within an executing Metaflow flow, we need to
+        exclude the files that are inserted by this content from being packaged (possibly).
+
+        Use this function to return these files or top-level directories.
+
+        Returns
+        -------
+        List[str]
+            Files or directories to exclude
+        """
+        return [self._code_dir, self._other_dir]
+
+    def content_names(
+        self, content_types: Optional[int] = None
+    ) -> Generator[Tuple[str, str], None, None]:
+        """
+        Detailed list of the content of this MetaflowCodeContent. This will list all files
+        (or non files -- for the INFO or CONFIG data for example) present in the archive.
+
+        Parameters
+        ----------
+        content_types : Optional[int]
+            The type of content to get the names of. If None, all content is returned.
+
+        Yields
+        ------
+        Generator[Tuple[str, str], None, None]
+            Path on the filesystem and the name in the archive
+        """
+        yield from self._content(content_types, generate_value=False)
+
+    def contents(
+        self, content_types: Optional[int] = None
+    ) -> Generator[Tuple[Union[bytes, str], str], None, None]:
+        """
+        Very similar to content_names but returns the content of the non-files
+        as well as bytes. For files, identical output as content_names
+
+        Parameters
+        ----------
+        content_types : Optional[int]
+            The type of content to get the content of. If None, all content is returned.
+
+        Yields
+        ------
+        Generator[Tuple[Union[str, bytes], str], None, None]
+            Content of the MF content
+        """
+        yield from self._content(content_types, generate_value=True)
+
+    def show(self) -> str:
+        """
+        Returns a more human-readable string representation of the content of this
+        MetaflowCodeContent. This will not, for example, list all files but summarize what
+        is included at a more high level.
+
+        Returns
+        -------
+        str
+            A human-readable string representation of the content of this MetaflowCodeContent
+        """
+        all_user_step_decorators = {}
+        for k, v in UserStepDecoratorMeta.all_decorators().items():
+            all_user_step_decorators.setdefault(
+                getattr(v, "_original_module", v.__module__), []
+            ).append(k)
+
+        all_user_flow_decorators = {}
+        for k, v in FlowMutatorMeta.all_decorators().items():
+            all_user_flow_decorators.setdefault(
+                getattr(v, "_original_module", v.__module__), []
+            ).append(k)
+
+        result = []
+        if self._metaflow_version:
+            result.append(f"\nMetaflow version: {self._metaflow_version}")
+        ext_info = extension_info()
+        if ext_info["installed"]:
+            result.append("\nMetaflow extensions packaged:")
+            for ext_name, ext_info in ext_info["installed"].items():
+                result.append(
+                    f"  - {ext_name} ({ext_info['extension_name']}) @ {ext_info['dist_version']}"
+                )
+
+        if self._modules:
+            mf_modules = []
+            other_modules = []
+            for name, info in self._modules.items():
+                if info.metaflow_module:
+                    mf_modules.append(f"  - {name} @ {', '.join(info.root_paths)}")
+                    module_user_step_decorators = [
+                        ", ".join(v)
+                        for k, v in all_user_step_decorators.items()
+                        if k == info.name or k.startswith(info.name + ".")
+                    ]
+                    module_user_flow_decorators = [
+                        ", ".join(v)
+                        for k, v in all_user_flow_decorators.items()
+                        if k == info.name or k.startswith(info.name + ".")
+                    ]
+                    if module_user_step_decorators:
+                        mf_modules.append(
+                            f"    - Provides step decorators: {', '.join(module_user_step_decorators)}"
+                        )
+                    if module_user_flow_decorators:
+                        mf_modules.append(
+                            f"    - Provides flow mutators: {', '.join(module_user_flow_decorators)}"
+                        )
+                else:
+                    other_modules.append(f"  - {name} @ {', '.join(info.root_paths)}")
+            if mf_modules:
+                result.append("\nMetaflow modules:")
+                result.extend(mf_modules)
+            if other_modules:
+                result.append("\nNon-Metaflow packaged modules:")
+                result.extend(other_modules)
+
+        return "\n".join(result)
+
+    def add_info(self, info: Dict[str, Any]) -> None:
+        """
+        Add the content of the INFO file to the Metaflow content
+
+        Parameters
+        ----------
+        info: Dict[str, Any]
+            The content of the INFO file
+        """
+        info_file_path = os.path.join(self._other_dir, self._info_file)
+        if info_file_path in self._other_content:
+            raise MetaflowException("INFO file already present in the MF environment")
+        self._other_content[info_file_path] = json.dumps(info).encode("utf-8")
+
+    def add_config(self, config: Dict[str, Any]) -> None:
+        """
+        Add the content of the CONFIG file to the Metaflow content
+
+        Parameters
+        ----------
+        config: Dict[str, Any]
+            The content of the CONFIG file
+        """
+        config_file_path = os.path.join(self._other_dir, self._config_file)
+        if config_file_path in self._other_content:
+            raise MetaflowException("CONFIG file already present in the MF environment")
+        self._other_content[config_file_path] = json.dumps(config).encode("utf-8")
+
+    def add_module(self, module: ModuleType) -> None:
+        """
+        Add a python module to the Metaflow content
+
+        Parameters
+        ----------
+        module_path: ModuleType
+            The module to add
+        """
+        name = module.__name__
+        debug.package_exec(f"Adding module {name} to the MF content")
+        # If the module is a single file, we handle this here by looking at __file__
+        # which will point to the single file. If it is an actual module, __path__
+        # will contain the path(s) to the module
+        self._modules[name] = _ModuleInfo(
+            name,
+            set(
+                Path(p).resolve().as_posix()
+                for p in getattr(module, "__path__", [module.__file__])
+            ),
+            module,
+            False,  # This is not a Metaflow module (added by the user manually)
+        )
+        self._files_from_modules.update(
+            self._module_files(name, self._modules[name].root_paths)
+        )
+
+    def add_code_file(self, file_path: str, file_name: str) -> None:
+        """
+        Add a code file to the Metaflow content
+
+        Parameters
+        ----------
+        file_path: str
+            The path to the code file to add (on the filesystem)
+        file_name: str
+            The path in the archive to add the code file to
+        """
+        file_path = os.path.realpath(file_path)
+        debug.package_exec(
+            f"Adding code file {file_path} as {file_name} to the MF content"
+        )
+
+        if file_path in self._files and self._files[file_path] != os.path.join(
+            self._code_dir, file_name.lstrip("/")
+        ):
+            raise MetaflowException(
+                "File '%s' is already present in the MF content with a different name: '%s'"
+                % (file_path, self._files[file_path])
+            )
+        self._files[file_path] = os.path.join(self._code_dir, file_name.lstrip("/"))
+
+    def add_other_file(self, file_path: str, file_name: str) -> None:
+        """
+        Add a non-python file to the Metaflow content
+
+        Parameters
+        ----------
+        file_path: str
+            The path to the file to add (on the filesystem)
+        file_name: str
+            The path in the archive to add the file to
+        """
+        file_path = os.path.realpath(file_path)
+        debug.package_exec(
+            f"Adding other file {file_path} as {file_name} to the MF content"
+        )
+        if file_path in self._other_files and self._other_files[
+            file_path
+        ] != os.path.join(self._other_dir, file_name.lstrip("/")):
+            raise MetaflowException(
+                "File %s is already present in the MF content with a different name: %s"
+                % (file_path, self._other_files[file_path])
+            )
+        self._other_files[file_path] = os.path.join(
+            self._other_dir, file_name.lstrip("/")
+        )
+
+    def _content(
+        self, content_types: Optional[int] = None, generate_value: bool = False
+    ) -> Generator[Tuple[Union[str, bytes], str], None, None]:
+        from ..package import MetaflowPackage  # Prevent circular dependency
+
+        if content_types is None:
+            content_types = ContentType.ALL_CONTENT.value
+
+        if content_types & ContentType.CODE_CONTENT.value:
+            yield from self._cached_metaflow_files
+            yield from self._files.items()
+        if content_types & ContentType.MODULE_CONTENT.value:
+            yield from self._files_from_modules.items()
+        if content_types & ContentType.OTHER_CONTENT.value:
+            yield from self._other_files.items()
+            if generate_value:
+                for k, v in self._other_content.items():
+                    yield v, k
+                # Include the distribution file too
+                yield json.dumps(self._distmetainfo).encode("utf-8"), os.path.join(
+                    self._other_dir, self._dist_info_file
+                )
+                yield json.dumps(self.create_mfcontent_info()).encode(
+                    "utf-8"
+                ), os.path.join(self._code_dir, MFCONTENT_MARKER)
+            else:
+                for k in self._other_content.keys():
+                    yield "<generated %s content>" % (os.path.basename(k)), k
+                yield "<generated %s content>" % (
+                    os.path.basename(self._dist_info_file)
+                ), os.path.join(self._other_dir, self._dist_info_file)
+                yield "<generated %s content>" % MFCONTENT_MARKER, os.path.join(
+                    self._code_dir, MFCONTENT_MARKER
+                )
+
+    def _metaflow_distribution_files(self) -> Generator[Tuple[str, str], None, None]:
+        debug.package_exec("Including Metaflow from '%s'" % self._metaflow_root)
+        for path_tuple in walk(
+            os.path.join(self._metaflow_root, "metaflow"),
+            exclude_hidden=False,
+            file_filter=suffix_filter(self.METAFLOW_SUFFIXES_LIST),
+        ):
+            yield path_tuple[0], os.path.join(self._code_dir, path_tuple[1])
+
+    def _metaflow_extension_files(self) -> Generator[Tuple[str, str], None, None]:
+        # Metaflow extensions; for now, we package *all* extensions but this may change
+        # at a later date; it is possible to call `package_mfext_package` instead of
+        # `package_mfext_all` but in that case, make sure to also add a
+        # metaflow_extensions/__init__.py file to properly "close" the metaflow_extensions
+        # package and prevent other extensions from being loaded that may be
+        # present in the rest of the system
+        for path_tuple in package_mfext_all():
+            yield path_tuple[0], os.path.join(self._code_dir, path_tuple[1])
+        if debug.package:
+            ext_info = package_mfext_all_descriptions()
+            ext_info = {
+                k: {k1: v1 for k1, v1 in v.items() if k1 in ("root_paths",)}
+                for k, v in ext_info.items()
+            }
+            debug.package_exec(f"Metaflow extensions packaged: {ext_info}")
+
+    def _module_files(
+        self, name: str, paths: Set[str]
+    ) -> Generator[Tuple[str, str], None, None]:
+        debug.package_exec(
+            "    Looking for distributions for module %s in %s" % (name, paths)
+        )
+        paths = set(paths)  # Do not modify external paths
+        has_init = False
+        distributions = modules_to_distributions().get(name)
+        prefix_parts = tuple(name.split("."))
+
+        seen_distributions = set()
+        if distributions:
+            for dist in distributions:
+                dist_name = dist.metadata["Name"]  # dist.name not always present
+                if dist_name in seen_distributions:
+                    continue
+                # For some reason, sometimes the same distribution appears twice. We
+                # don't need to process twice.
+                seen_distributions.add(dist_name)
+                debug.package_exec(
+                    "    Including distribution '%s' for module '%s'"
+                    % (dist_name, name)
+                )
+                dist_root = str(dist.locate_file(name))
+                if dist_root not in paths:
+                    # This is an error because it means that this distribution is
+                    # not contributing to the module.
+                    raise RuntimeError(
+                        "Distribution '%s' is not contributing to module '%s' as "
+                        "expected (got '%s' when expected one of %s)"
+                        % (dist.metadata["Name"], name, dist_root, paths)
+                    )
+                paths.discard(dist_root)
+                if dist_name not in self._distmetainfo:
+                    # Possible that a distribution contributes to multiple modules
+                    self._distmetainfo[dist_name] = {
+                        # We can add more if needed but these are likely the most
+                        # useful (captures, name, version, etc and files which can
+                        # be used to find non-python files in the distribution).
+                        "METADATA": dist.read_text("METADATA") or "",
+                        "RECORD": dist.read_text("RECORD") or "",
+                    }
+                for file in dist.files or []:
+                    # Skip files that do not belong to this module (distribution may
+                    # provide multiple modules)
+                    if file.parts[: len(prefix_parts)] != prefix_parts:
+                        continue
+                    if file.parts[len(prefix_parts)] == "__init__.py":
+                        has_init = True
+                    yield str(
+                        dist.locate_file(file).resolve().as_posix()
+                    ), os.path.join(self._code_dir, *prefix_parts, *file.parts[1:])
+
+        # Now if there are more paths left in paths, it means there is a non-distribution
+        # component to this package which we also include.
+        debug.package_exec(
+            "    Looking for non-distribution files for module '%s' in %s"
+            % (name, paths)
+        )
+        for path in paths:
+            if not Path(path).is_dir():
+                # Single file for the module -- this will be something like <name>.py
+                yield path, os.path.join(
+                    self._code_dir, *prefix_parts[:-1], f"{prefix_parts[-1]}.py"
+                )
+                has_init = True
+            else:
+                for root, _, files in os.walk(path):
+                    for file in files:
+                        if any(file.endswith(x) for x in EXT_EXCLUDE_SUFFIXES):
+                            continue
+                        rel_path = os.path.relpath(os.path.join(root, file), path)
+                        if rel_path == "__init__.py":
+                            has_init = True
+                        yield os.path.join(root, file), os.path.join(
+                            self._code_dir,
+                            name,
+                            rel_path,
+                        )
+        # We now include an empty __init__.py file to close the module and prevent
+        # leaks from possible namespace packages
+        if not has_init:
+            yield os.path.join(
+                self._metaflow_root, "metaflow", "extension_support", "_empty_file.py"
+            ), os.path.join(self._code_dir, *prefix_parts, "__init__.py")

metaflow/plugins/airflow/airflow.py

@@ -66,6 +66,7 @@ class Airflow(object):
         name,
         graph,
         flow,
+        code_package_metadata,
         code_package_sha,
         code_package_url,
         metadata,
@@ -87,6 +88,7 @@ class Airflow(object):
         self.name = name
         self.graph = graph
         self.flow = flow
+        self.code_package_metadata = code_package_metadata
         self.code_package_sha = code_package_sha
         self.code_package_url = code_package_url
         self.metadata = metadata
@@ -372,6 +374,7 @@ class Airflow(object):
             # Technically the "user" is the stakeholder but should these labels be present.
         }
         additional_mf_variables = {
+            "METAFLOW_CODE_METADATA": self.code_package_metadata,
             "METAFLOW_CODE_SHA": self.code_package_sha,
             "METAFLOW_CODE_URL": self.code_package_url,
             "METAFLOW_CODE_DS": self.flow_datastore.TYPE,
@@ -476,6 +479,7 @@ class Airflow(object):
                 node.name,
                 AIRFLOW_MACROS.create_task_id(self.contains_foreach),
                 AIRFLOW_MACROS.ATTEMPT,
+                code_package_metadata=self.code_package_metadata,
                 code_package_url=self.code_package_url,
                 step_cmds=self._step_cli(
                     node, input_paths, self.code_package_url, user_code_retries
@@ -534,7 +538,7 @@ class Airflow(object):
             "with": [
                 decorator.make_decorator_spec()
                 for decorator in node.decorators
-                if not decorator.statically_defined
+                if not decorator.statically_defined and decorator.inserted_by is None
             ]
         }
         # FlowDecorators can define their own top-level options. They are

metaflow/plugins/airflow/airflow_cli.py

@@ -7,6 +7,7 @@ from hashlib import sha1
 from metaflow import current, decorators
 from metaflow._vendor import click
 from metaflow.exception import MetaflowException, MetaflowInternalError
+from metaflow.metaflow_config import FEAT_ALWAYS_UPLOAD_CODE_PACKAGE
 from metaflow.package import MetaflowPackage
 from metaflow.plugins.aws.step_functions.production_token import (
     load_token,
@@ -288,20 +289,30 @@ def make_flow(
     decorators._init_step_decorators(
         obj.flow, obj.graph, obj.environment, obj.flow_datastore, obj.logger
     )
-
+    obj.graph = obj.flow._graph
     # Save the code package in the flow datastore so that both user code and
     # metaflow package can be retrieved during workflow execution.
     obj.package = MetaflowPackage(
-        obj.flow, obj.environment, obj.echo, obj.package_suffixes
+        obj.flow,
+        obj.environment,
+        obj.echo,
+        suffixes=obj.package_suffixes,
+        flow_datastore=obj.flow_datastore if FEAT_ALWAYS_UPLOAD_CODE_PACKAGE else None,
     )
-    package_url, package_sha = obj.flow_datastore.save_data(
-        [obj.package.blob], len_hint=1
-    )[0]
+    # This blocks until the package is created
+    if FEAT_ALWAYS_UPLOAD_CODE_PACKAGE:
+        package_url = obj.package.package_url()
+        package_sha = obj.package.package_sha()
+    else:
+        package_url, package_sha = obj.flow_datastore.save_data(
+            [obj.package.blob], len_hint=1
+        )[0]
 
     return Airflow(
         dag_name,
         obj.graph,
         obj.flow,
+        obj.package.package_metadata,
         package_sha,
         package_url,
         obj.metadata,

metaflow/plugins/argo/argo_workflows.py

@@ -92,6 +92,7 @@ class ArgoWorkflows(object):
         name,
         graph: FlowGraph,
         flow,
+        code_package_metadata,
         code_package_sha,
         code_package_url,
         production_token,
@@ -152,6 +153,7 @@ class ArgoWorkflows(object):
         self.name = name
         self.graph = graph
         self.flow = flow
+        self.code_package_metadata = code_package_metadata
         self.code_package_sha = code_package_sha
         self.code_package_url = code_package_url
         self.production_token = production_token
@@ -560,7 +562,7 @@ class ArgoWorkflows(object):
                 type=param_type,
                 description=param.kwargs.get("help"),
                 is_required=is_required,
-                **extra_attrs
+                **extra_attrs,
             )
         return parameters
 
@@ -1504,7 +1506,9 @@ class ArgoWorkflows(object):
                     mflog_expr,
                 ]
                 + self.environment.get_package_commands(
-                    self.code_package_url, self.flow_datastore.TYPE
+                    self.code_package_url,
+                    self.flow_datastore.TYPE,
+                    self.code_package_metadata,
                 )
             )
             step_cmds = self.environment.bootstrap_commands(
@@ -1516,6 +1520,7 @@ class ArgoWorkflows(object):
                     decorator.make_decorator_spec()
                     for decorator in node.decorators
                     if not decorator.statically_defined
+                    and decorator.inserted_by is None
                 ]
             }
             # FlowDecorators can define their own top-level options. They are
@@ -1682,6 +1687,7 @@ class ArgoWorkflows(object):
                     **{
                         # These values are needed by Metaflow to set it's internal
                         # state appropriately.
+                        "METAFLOW_CODE_METADATA": self.code_package_metadata,
                         "METAFLOW_CODE_URL": self.code_package_url,
                         "METAFLOW_CODE_SHA": self.code_package_sha,
                         "METAFLOW_CODE_DS": self.flow_datastore.TYPE,
@@ -2509,7 +2515,9 @@ class ArgoWorkflows(object):
                 mflog_expr,
             ]
             + self.environment.get_package_commands(
-                self.code_package_url, self.flow_datastore.TYPE
+                self.code_package_url,
+                self.flow_datastore.TYPE,
+                self.code_package_metadata,
             )[:-1]
             # Replace the line 'Task in starting'
             # FIXME: this can be brittle.
@@ -2529,6 +2537,7 @@ class ArgoWorkflows(object):
         env = {
             # These values are needed by Metaflow to set it's internal
             # state appropriately.
+            "METAFLOW_CODE_METADATA": self.code_package_metadata,
             "METAFLOW_CODE_URL": self.code_package_url,
             "METAFLOW_CODE_SHA": self.code_package_sha,
             "METAFLOW_CODE_DS": self.flow_datastore.TYPE,
@@ -3003,7 +3012,8 @@ class ArgoWorkflows(object):
                 mflog_expr,
             ]
             + self.environment.get_package_commands(
-                self.code_package_url, self.flow_datastore.TYPE
+                self.code_package_url,
+                self.flow_datastore.TYPE,
             )[:-1]
             # Replace the line 'Task in starting'
             # FIXME: this can be brittle.
@@ -3018,6 +3028,7 @@ class ArgoWorkflows(object):
         env = {
             # These values are needed by Metaflow to set it's internal
             # state appropriately.
+            "METAFLOW_CODE_METADATA": self.code_package_metadata,
             "METAFLOW_CODE_URL": self.code_package_url,
             "METAFLOW_CODE_SHA": self.code_package_sha,
             "METAFLOW_CODE_DS": self.flow_datastore.TYPE,