ob-metaflow 2.12.36.2__py2.py3-none-any.whl → 2.12.36.3__py2.py3-none-any.whl
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- metaflow/__init__.py +0 -3
- metaflow/cli.py +697 -84
- metaflow/cli_args.py +0 -17
- metaflow/cmd/develop/stub_generator.py +2 -9
- metaflow/decorators.py +2 -63
- metaflow/extension_support/plugins.py +27 -41
- metaflow/flowspec.py +16 -156
- metaflow/includefile.py +22 -50
- metaflow/metaflow_config.py +1 -1
- metaflow/package.py +3 -17
- metaflow/parameters.py +23 -80
- metaflow/plugins/__init__.py +0 -4
- metaflow/plugins/airflow/airflow_cli.py +0 -1
- metaflow/plugins/argo/argo_workflows.py +1 -41
- metaflow/plugins/argo/argo_workflows_cli.py +0 -1
- metaflow/plugins/argo/argo_workflows_deployer_objects.py +1 -5
- metaflow/plugins/aws/batch/batch_decorator.py +2 -2
- metaflow/plugins/aws/step_functions/step_functions.py +0 -32
- metaflow/plugins/aws/step_functions/step_functions_cli.py +0 -1
- metaflow/plugins/aws/step_functions/step_functions_deployer_objects.py +0 -3
- metaflow/plugins/datatools/s3/s3op.py +3 -3
- metaflow/plugins/kubernetes/kubernetes_cli.py +1 -1
- metaflow/plugins/kubernetes/kubernetes_decorator.py +2 -2
- metaflow/plugins/pypi/conda_decorator.py +10 -20
- metaflow/plugins/pypi/pypi_decorator.py +9 -11
- metaflow/plugins/timeout_decorator.py +2 -2
- metaflow/runner/click_api.py +19 -73
- metaflow/runner/deployer.py +1 -1
- metaflow/runner/deployer_impl.py +2 -2
- metaflow/runner/metaflow_runner.py +1 -4
- metaflow/runner/nbdeploy.py +0 -2
- metaflow/runner/nbrun.py +1 -1
- metaflow/runner/subprocess_manager.py +1 -3
- metaflow/runner/utils.py +20 -37
- metaflow/runtime.py +73 -111
- metaflow/sidecar/sidecar_worker.py +1 -1
- metaflow/util.py +0 -17
- metaflow/version.py +1 -1
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/METADATA +2 -3
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/RECORD +44 -54
- metaflow/cli_components/__init__.py +0 -0
- metaflow/cli_components/dump_cmd.py +0 -96
- metaflow/cli_components/init_cmd.py +0 -51
- metaflow/cli_components/run_cmds.py +0 -358
- metaflow/cli_components/step_cmd.py +0 -189
- metaflow/cli_components/utils.py +0 -140
- metaflow/user_configs/__init__.py +0 -0
- metaflow/user_configs/config_decorators.py +0 -563
- metaflow/user_configs/config_options.py +0 -495
- metaflow/user_configs/config_parameters.py +0 -386
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/LICENSE +0 -0
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/WHEEL +0 -0
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/entry_points.txt +0 -0
- {ob_metaflow-2.12.36.2.dist-info → ob_metaflow-2.12.36.3.dist-info}/top_level.txt +0 -0
metaflow/cli.py
CHANGED
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@@ -1,18 +1,18 @@
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1
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-
import functools
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import inspect
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import json
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import sys
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import traceback
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from datetime import datetime
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from functools import wraps
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import metaflow.tracing as tracing
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from metaflow._vendor import click
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from metaflow.client.core import get_metadata
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from . import decorators, lint, metaflow_version, parameters, plugins
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from . import decorators, lint, metaflow_version, namespace, parameters, plugins
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from .cli_args import cli_args
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from .
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from .datastore import FlowDataStore
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from .datastore import FlowDataStore, TaskDataStore, TaskDataStoreSet
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from .exception import CommandException, MetaflowException
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from .flowspec import _FlowState
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from .graph import FlowGraph
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from .metaflow_config import (
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DECOSPECS,
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from .metaflow_current import current
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from metaflow.system import _system_monitor, _system_logger
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from .metaflow_environment import MetaflowEnvironment
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from .mflog import LOG_SOURCES, mflog
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from .package import MetaflowPackage
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from .plugins import (
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DATASTORES,
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ENVIRONMENTS,
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)
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from .pylint_wrapper import PyLint
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from .R import metaflow_r_version, use_r
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from .
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from .
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from .
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from .runtime import NativeRuntime
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from .tagging_util import validate_tags
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from .task import MetaflowTask
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from .unbounded_foreach import UBF_CONTROL, UBF_TASK
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from .util import (
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decompress_list,
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get_latest_run_id,
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resolve_identity,
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write_latest_run_id,
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)
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ERASE_TO_EOL = "\033[K"
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HIGHLIGHT = "red"
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LOGGER_COLOR = "green"
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LOGGER_BAD_COLOR = "red"
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try:
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# Python 2
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import cPickle as pickle
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except ImportError:
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# Python 3
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import pickle
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def echo_dev_null(*args, **kwargs):
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pass
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return tuple(list(value) + DECOSPECS.split())
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@click.group(
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cls=LazyGroup,
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lazy_subcommands={
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"init": "metaflow.cli_components.init_cmd.init",
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"dump": "metaflow.cli_components.dump_cmd.dump",
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"step": "metaflow.cli_components.step_cmd.step",
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"run": "metaflow.cli_components.run_cmds.run",
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"resume": "metaflow.cli_components.run_cmds.resume",
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},
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)
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@click.group()
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def cli(ctx):
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pass
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)
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@click.pass_obj
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def check(obj, warnings=False):
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echo = echo_dev_null
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else:
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echo = echo_always
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_check(
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echo, obj.graph, obj.flow, obj.environment, pylint=obj.pylint, warnings=warnings
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)
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_check(obj.graph, obj.flow, obj.environment, pylint=obj.pylint, warnings=warnings)
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fname = inspect.getfile(obj.flow.__class__)
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echo(
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"\n*'{cmd} show'* shows a description of this flow.\n"
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echo_always(obj.graph.output_dot(), err=False)
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@cli.command(
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help="Get data artifacts of a task or all tasks in a step. "
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"The format for input-path is either <run_id>/<step_name> or "
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"<run_id>/<step_name>/<task_id>."
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)
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@click.argument("input-path")
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@click.option(
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"--private/--no-private",
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default=False,
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show_default=True,
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help="Show also private attributes.",
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)
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@click.option(
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"--max-value-size",
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default=1000,
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show_default=True,
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type=int,
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help="Show only values that are smaller than this number. "
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"Set to 0 to see only keys.",
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)
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@click.option(
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"--include",
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type=str,
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default="",
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help="Include only artifacts in the given comma-separated list.",
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)
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@click.option(
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"--file", type=str, default=None, help="Serialize artifacts in the given file."
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)
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@click.pass_obj
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def dump(obj, input_path, private=None, max_value_size=None, include=None, file=None):
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output = {}
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kwargs = {
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"show_private": private,
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"max_value_size": max_value_size,
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"include": {t for t in include.split(",") if t},
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}
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# Pathspec can either be run_id/step_name or run_id/step_name/task_id.
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parts = input_path.split("/")
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if len(parts) == 2:
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run_id, step_name = parts
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task_id = None
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elif len(parts) == 3:
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run_id, step_name, task_id = parts
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else:
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raise CommandException(
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"input_path should either be run_id/step_name or run_id/step_name/task_id"
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)
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datastore_set = TaskDataStoreSet(
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obj.flow_datastore,
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run_id,
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steps=[step_name],
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prefetch_data_artifacts=kwargs.get("include"),
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)
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if task_id:
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ds_list = [datastore_set.get_with_pathspec(input_path)]
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else:
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ds_list = list(datastore_set) # get all tasks
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for ds in ds_list:
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echo(
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"Dumping output of run_id=*{run_id}* "
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"step=*{step}* task_id=*{task_id}*".format(
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run_id=ds.run_id, step=ds.step_name, task_id=ds.task_id
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),
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fg="magenta",
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)
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if file is None:
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echo_always(
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ds.format(**kwargs), highlight="green", highlight_bold=False, err=False
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)
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else:
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output[ds.pathspec] = ds.to_dict(**kwargs)
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if file is not None:
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with open(file, "wb") as f:
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pickle.dump(output, f, protocol=pickle.HIGHEST_PROTOCOL)
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echo("Artifacts written to *%s*" % file)
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# TODO - move step and init under a separate 'internal' subcommand
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@cli.command(help="Internal command to execute a single task.", hidden=True)
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@click.argument("step-name")
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@click.option(
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"--run-id",
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default=None,
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required=True,
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help="ID for one execution of all steps in the flow.",
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)
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@click.option(
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"--task-id",
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default=None,
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required=True,
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show_default=True,
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help="ID for this instance of the step.",
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)
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@click.option(
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"--input-paths",
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help="A comma-separated list of pathspecs specifying inputs for this step.",
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)
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@click.option(
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"--input-paths-filename",
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type=click.Path(exists=True, readable=True, dir_okay=False, resolve_path=True),
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help="A filename containing the argument typically passed to `input-paths`",
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hidden=True,
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)
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@click.option(
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"--split-index",
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type=int,
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default=None,
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show_default=True,
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help="Index of this foreach split.",
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)
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@click.option(
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"--tag",
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"opt_tag",
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multiple=True,
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default=None,
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help="Annotate this run with the given tag. You can specify "
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"this option multiple times to attach multiple tags in "
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"the task.",
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)
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@click.option(
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"--namespace",
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"opt_namespace",
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default=None,
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help="Change namespace from the default (your username) to the specified tag.",
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)
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@click.option(
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"--retry-count",
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default=0,
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help="How many times we have attempted to run this task.",
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)
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@click.option(
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"--max-user-code-retries",
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default=0,
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help="How many times we should attempt running the user code.",
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)
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@click.option(
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"--clone-only",
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default=None,
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help="Pathspec of the origin task for this task to clone. Do "
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"not execute anything.",
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@click.option(
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"--clone-run-id",
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default=None,
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help="Run id of the origin flow, if this task is part of a flow being resumed.",
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)
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@click.option(
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"--with",
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"decospecs",
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multiple=True,
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help="Add a decorator to this task. You can specify this "
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"option multiple times to attach multiple decorators "
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"to this task.",
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)
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@click.option(
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"--ubf-context",
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default="none",
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type=click.Choice(["none", UBF_CONTROL, UBF_TASK]),
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help="Provides additional context if this task is of type unbounded foreach.",
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)
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@click.option(
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"--num-parallel",
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default=0,
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type=int,
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help="Number of parallel instances of a step. Ignored in local mode (see parallel decorator code).",
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)
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@click.pass_context
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def step(
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ctx,
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step_name,
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opt_tag=None,
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run_id=None,
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|
404
|
+
task_id=None,
|
|
405
|
+
input_paths=None,
|
|
406
|
+
input_paths_filename=None,
|
|
407
|
+
split_index=None,
|
|
408
|
+
opt_namespace=None,
|
|
409
|
+
retry_count=None,
|
|
410
|
+
max_user_code_retries=None,
|
|
411
|
+
clone_only=None,
|
|
412
|
+
clone_run_id=None,
|
|
413
|
+
decospecs=None,
|
|
414
|
+
ubf_context="none",
|
|
415
|
+
num_parallel=None,
|
|
416
|
+
):
|
|
417
|
+
if ubf_context == "none":
|
|
418
|
+
ubf_context = None
|
|
419
|
+
if opt_namespace is not None:
|
|
420
|
+
namespace(opt_namespace or None)
|
|
421
|
+
|
|
422
|
+
func = None
|
|
423
|
+
try:
|
|
424
|
+
func = getattr(ctx.obj.flow, step_name)
|
|
425
|
+
except:
|
|
426
|
+
raise CommandException("Step *%s* doesn't exist." % step_name)
|
|
427
|
+
if not func.is_step:
|
|
428
|
+
raise CommandException("Function *%s* is not a step." % step_name)
|
|
429
|
+
echo("Executing a step, *%s*" % step_name, fg="magenta", bold=False)
|
|
430
|
+
|
|
431
|
+
if decospecs:
|
|
432
|
+
decorators._attach_decorators_to_step(func, decospecs)
|
|
433
|
+
|
|
434
|
+
step_kwargs = ctx.params
|
|
435
|
+
# Remove argument `step_name` from `step_kwargs`.
|
|
436
|
+
step_kwargs.pop("step_name", None)
|
|
437
|
+
# Remove `opt_*` prefix from (some) option keys.
|
|
438
|
+
step_kwargs = dict(
|
|
439
|
+
[(k[4:], v) if k.startswith("opt_") else (k, v) for k, v in step_kwargs.items()]
|
|
440
|
+
)
|
|
441
|
+
cli_args._set_step_kwargs(step_kwargs)
|
|
442
|
+
|
|
443
|
+
ctx.obj.metadata.add_sticky_tags(tags=opt_tag)
|
|
444
|
+
if not input_paths and input_paths_filename:
|
|
445
|
+
with open(input_paths_filename, mode="r", encoding="utf-8") as f:
|
|
446
|
+
input_paths = f.read().strip(" \n\"'")
|
|
447
|
+
|
|
448
|
+
paths = decompress_list(input_paths) if input_paths else []
|
|
449
|
+
|
|
450
|
+
task = MetaflowTask(
|
|
451
|
+
ctx.obj.flow,
|
|
452
|
+
ctx.obj.flow_datastore,
|
|
453
|
+
ctx.obj.metadata,
|
|
454
|
+
ctx.obj.environment,
|
|
455
|
+
ctx.obj.echo,
|
|
456
|
+
ctx.obj.event_logger,
|
|
457
|
+
ctx.obj.monitor,
|
|
458
|
+
ubf_context,
|
|
459
|
+
)
|
|
460
|
+
if clone_only:
|
|
461
|
+
task.clone_only(
|
|
462
|
+
step_name,
|
|
463
|
+
run_id,
|
|
464
|
+
task_id,
|
|
465
|
+
clone_only,
|
|
466
|
+
retry_count,
|
|
467
|
+
)
|
|
468
|
+
else:
|
|
469
|
+
task.run_step(
|
|
470
|
+
step_name,
|
|
471
|
+
run_id,
|
|
472
|
+
task_id,
|
|
473
|
+
clone_run_id,
|
|
474
|
+
paths,
|
|
475
|
+
split_index,
|
|
476
|
+
retry_count,
|
|
477
|
+
max_user_code_retries,
|
|
478
|
+
)
|
|
479
|
+
|
|
480
|
+
echo("Success", fg="green", bold=True, indent=True)
|
|
481
|
+
|
|
482
|
+
|
|
483
|
+
@parameters.add_custom_parameters(deploy_mode=False)
|
|
484
|
+
@cli.command(help="Internal command to initialize a run.", hidden=True)
|
|
485
|
+
@click.option(
|
|
486
|
+
"--run-id",
|
|
487
|
+
default=None,
|
|
488
|
+
required=True,
|
|
489
|
+
help="ID for one execution of all steps in the flow.",
|
|
490
|
+
)
|
|
491
|
+
@click.option(
|
|
492
|
+
"--task-id", default=None, required=True, help="ID for this instance of the step."
|
|
493
|
+
)
|
|
494
|
+
@click.option(
|
|
495
|
+
"--tag",
|
|
496
|
+
"tags",
|
|
497
|
+
multiple=True,
|
|
498
|
+
default=None,
|
|
499
|
+
help="Tags for this instance of the step.",
|
|
500
|
+
)
|
|
501
|
+
@click.pass_obj
|
|
502
|
+
def init(obj, run_id=None, task_id=None, tags=None, **kwargs):
|
|
503
|
+
# init is a separate command instead of an option in 'step'
|
|
504
|
+
# since we need to capture user-specified parameters with
|
|
505
|
+
# @add_custom_parameters. Adding custom parameters to 'step'
|
|
506
|
+
# is not desirable due to the possibility of name clashes between
|
|
507
|
+
# user-specified parameters and our internal options. Note that
|
|
508
|
+
# user-specified parameters are often defined as environment
|
|
509
|
+
# variables.
|
|
510
|
+
|
|
511
|
+
obj.metadata.add_sticky_tags(tags=tags)
|
|
512
|
+
|
|
513
|
+
runtime = NativeRuntime(
|
|
514
|
+
obj.flow,
|
|
515
|
+
obj.graph,
|
|
516
|
+
obj.flow_datastore,
|
|
517
|
+
obj.metadata,
|
|
518
|
+
obj.environment,
|
|
519
|
+
obj.package,
|
|
520
|
+
obj.logger,
|
|
521
|
+
obj.entrypoint,
|
|
522
|
+
obj.event_logger,
|
|
523
|
+
obj.monitor,
|
|
524
|
+
run_id=run_id,
|
|
525
|
+
)
|
|
526
|
+
obj.flow._set_constants(obj.graph, kwargs)
|
|
527
|
+
runtime.persist_constants(task_id=task_id)
|
|
528
|
+
|
|
529
|
+
|
|
530
|
+
def common_run_options(func):
|
|
531
|
+
@click.option(
|
|
532
|
+
"--tag",
|
|
533
|
+
"tags",
|
|
534
|
+
multiple=True,
|
|
535
|
+
default=None,
|
|
536
|
+
help="Annotate this run with the given tag. You can specify "
|
|
537
|
+
"this option multiple times to attach multiple tags in "
|
|
538
|
+
"the run.",
|
|
539
|
+
)
|
|
540
|
+
@click.option(
|
|
541
|
+
"--max-workers",
|
|
542
|
+
default=16,
|
|
543
|
+
show_default=True,
|
|
544
|
+
help="Maximum number of parallel processes.",
|
|
545
|
+
)
|
|
546
|
+
@click.option(
|
|
547
|
+
"--max-num-splits",
|
|
548
|
+
default=100,
|
|
549
|
+
show_default=True,
|
|
550
|
+
help="Maximum number of splits allowed in a foreach. This "
|
|
551
|
+
"is a safety check preventing bugs from triggering "
|
|
552
|
+
"thousands of steps inadvertently.",
|
|
553
|
+
)
|
|
554
|
+
@click.option(
|
|
555
|
+
"--max-log-size",
|
|
556
|
+
default=10,
|
|
557
|
+
show_default=True,
|
|
558
|
+
help="Maximum size of stdout and stderr captured in "
|
|
559
|
+
"megabytes. If a step outputs more than this to "
|
|
560
|
+
"stdout/stderr, its output will be truncated.",
|
|
561
|
+
)
|
|
562
|
+
@click.option(
|
|
563
|
+
"--with",
|
|
564
|
+
"decospecs",
|
|
565
|
+
multiple=True,
|
|
566
|
+
help="Add a decorator to all steps. You can specify this "
|
|
567
|
+
"option multiple times to attach multiple decorators "
|
|
568
|
+
"in steps.",
|
|
569
|
+
)
|
|
570
|
+
@click.option(
|
|
571
|
+
"--run-id-file",
|
|
572
|
+
default=None,
|
|
573
|
+
show_default=True,
|
|
574
|
+
type=str,
|
|
575
|
+
help="Write the ID of this run to the file specified.",
|
|
576
|
+
)
|
|
577
|
+
@click.option(
|
|
578
|
+
"--runner-attribute-file",
|
|
579
|
+
default=None,
|
|
580
|
+
show_default=True,
|
|
581
|
+
type=str,
|
|
582
|
+
help="Write the metadata and pathspec of this run to the file specified. Used internally for Metaflow's Runner API.",
|
|
583
|
+
)
|
|
584
|
+
@wraps(func)
|
|
585
|
+
def wrapper(*args, **kwargs):
|
|
586
|
+
return func(*args, **kwargs)
|
|
587
|
+
|
|
588
|
+
return wrapper
|
|
589
|
+
|
|
590
|
+
|
|
591
|
+
@click.option(
|
|
592
|
+
"--origin-run-id",
|
|
593
|
+
default=None,
|
|
594
|
+
help="ID of the run that should be resumed. By default, the "
|
|
595
|
+
"last run executed locally.",
|
|
596
|
+
)
|
|
597
|
+
@click.option(
|
|
598
|
+
"--run-id",
|
|
599
|
+
default=None,
|
|
600
|
+
help="Run ID for the new run. By default, a new run-id will be generated",
|
|
601
|
+
hidden=True,
|
|
602
|
+
)
|
|
603
|
+
@click.option(
|
|
604
|
+
"--clone-only/--no-clone-only",
|
|
605
|
+
default=False,
|
|
606
|
+
show_default=True,
|
|
607
|
+
help="Only clone tasks without continuing execution",
|
|
608
|
+
hidden=True,
|
|
609
|
+
)
|
|
610
|
+
@click.option(
|
|
611
|
+
"--reentrant/--no-reentrant",
|
|
612
|
+
default=False,
|
|
613
|
+
show_default=True,
|
|
614
|
+
hidden=True,
|
|
615
|
+
help="If specified, allows this call to be called in parallel",
|
|
616
|
+
)
|
|
617
|
+
@click.option(
|
|
618
|
+
"--resume-identifier",
|
|
619
|
+
default=None,
|
|
620
|
+
show_default=True,
|
|
621
|
+
hidden=True,
|
|
622
|
+
help="If specified, it identifies the task that started this resume call. It is in the form of {step_name}-{task_id}",
|
|
623
|
+
)
|
|
624
|
+
@click.argument("step-to-rerun", required=False)
|
|
625
|
+
@cli.command(help="Resume execution of a previous run of this flow.")
|
|
626
|
+
@common_run_options
|
|
627
|
+
@click.pass_obj
|
|
628
|
+
def resume(
|
|
629
|
+
obj,
|
|
630
|
+
tags=None,
|
|
631
|
+
step_to_rerun=None,
|
|
632
|
+
origin_run_id=None,
|
|
633
|
+
run_id=None,
|
|
634
|
+
clone_only=False,
|
|
635
|
+
reentrant=False,
|
|
636
|
+
max_workers=None,
|
|
637
|
+
max_num_splits=None,
|
|
638
|
+
max_log_size=None,
|
|
639
|
+
decospecs=None,
|
|
640
|
+
run_id_file=None,
|
|
641
|
+
resume_identifier=None,
|
|
642
|
+
runner_attribute_file=None,
|
|
643
|
+
):
|
|
644
|
+
before_run(obj, tags, decospecs)
|
|
645
|
+
|
|
646
|
+
if origin_run_id is None:
|
|
647
|
+
origin_run_id = get_latest_run_id(obj.echo, obj.flow.name)
|
|
648
|
+
if origin_run_id is None:
|
|
649
|
+
raise CommandException(
|
|
650
|
+
"A previous run id was not found. Specify --origin-run-id."
|
|
651
|
+
)
|
|
652
|
+
|
|
653
|
+
if step_to_rerun is None:
|
|
654
|
+
steps_to_rerun = set()
|
|
655
|
+
else:
|
|
656
|
+
# validate step name
|
|
657
|
+
if step_to_rerun not in obj.graph.nodes:
|
|
658
|
+
raise CommandException(
|
|
659
|
+
"invalid step name {0} specified, must be step present in "
|
|
660
|
+
"current form of execution graph. Valid step names include: {1}".format(
|
|
661
|
+
step_to_rerun, ",".join(list(obj.graph.nodes.keys()))
|
|
662
|
+
)
|
|
663
|
+
)
|
|
664
|
+
steps_to_rerun = {step_to_rerun}
|
|
665
|
+
|
|
666
|
+
if run_id:
|
|
667
|
+
# Run-ids that are provided by the metadata service are always integers.
|
|
668
|
+
# External providers or run-ids (like external schedulers) always need to
|
|
669
|
+
# be non-integers to avoid any clashes. This condition ensures this.
|
|
670
|
+
try:
|
|
671
|
+
int(run_id)
|
|
672
|
+
except:
|
|
673
|
+
pass
|
|
674
|
+
else:
|
|
675
|
+
raise CommandException("run-id %s cannot be an integer" % run_id)
|
|
676
|
+
|
|
677
|
+
runtime = NativeRuntime(
|
|
678
|
+
obj.flow,
|
|
679
|
+
obj.graph,
|
|
680
|
+
obj.flow_datastore,
|
|
681
|
+
obj.metadata,
|
|
682
|
+
obj.environment,
|
|
683
|
+
obj.package,
|
|
684
|
+
obj.logger,
|
|
685
|
+
obj.entrypoint,
|
|
686
|
+
obj.event_logger,
|
|
687
|
+
obj.monitor,
|
|
688
|
+
run_id=run_id,
|
|
689
|
+
clone_run_id=origin_run_id,
|
|
690
|
+
clone_only=clone_only,
|
|
691
|
+
reentrant=reentrant,
|
|
692
|
+
steps_to_rerun=steps_to_rerun,
|
|
693
|
+
max_workers=max_workers,
|
|
694
|
+
max_num_splits=max_num_splits,
|
|
695
|
+
max_log_size=max_log_size * 1024 * 1024,
|
|
696
|
+
resume_identifier=resume_identifier,
|
|
697
|
+
)
|
|
698
|
+
write_file(run_id_file, runtime.run_id)
|
|
699
|
+
runtime.print_workflow_info()
|
|
700
|
+
|
|
701
|
+
runtime.persist_constants()
|
|
702
|
+
|
|
703
|
+
if runner_attribute_file:
|
|
704
|
+
with open(runner_attribute_file, "w", encoding="utf-8") as f:
|
|
705
|
+
json.dump(
|
|
706
|
+
{
|
|
707
|
+
"run_id": runtime.run_id,
|
|
708
|
+
"flow_name": obj.flow.name,
|
|
709
|
+
"metadata": obj.metadata.metadata_str(),
|
|
710
|
+
},
|
|
711
|
+
f,
|
|
712
|
+
)
|
|
713
|
+
|
|
714
|
+
# We may skip clone-only resume if this is not a resume leader,
|
|
715
|
+
# and clone is already complete.
|
|
716
|
+
if runtime.should_skip_clone_only_execution():
|
|
717
|
+
return
|
|
718
|
+
|
|
719
|
+
current._update_env(
|
|
720
|
+
{
|
|
721
|
+
"run_id": runtime.run_id,
|
|
722
|
+
}
|
|
723
|
+
)
|
|
724
|
+
_system_logger.log_event(
|
|
725
|
+
level="info",
|
|
726
|
+
module="metaflow.resume",
|
|
727
|
+
name="start",
|
|
728
|
+
payload={
|
|
729
|
+
"msg": "Resuming run",
|
|
730
|
+
},
|
|
731
|
+
)
|
|
732
|
+
|
|
733
|
+
with runtime.run_heartbeat():
|
|
734
|
+
if clone_only:
|
|
735
|
+
runtime.clone_original_run()
|
|
736
|
+
else:
|
|
737
|
+
runtime.clone_original_run(generate_task_obj=True, verbose=False)
|
|
738
|
+
runtime.execute()
|
|
739
|
+
|
|
740
|
+
|
|
741
|
+
@tracing.cli_entrypoint("cli/run")
|
|
742
|
+
@parameters.add_custom_parameters(deploy_mode=True)
|
|
743
|
+
@cli.command(help="Run the workflow locally.")
|
|
744
|
+
@common_run_options
|
|
745
|
+
@click.option(
|
|
746
|
+
"--namespace",
|
|
747
|
+
"user_namespace",
|
|
748
|
+
default=None,
|
|
749
|
+
help="Change namespace from the default (your username) to "
|
|
750
|
+
"the specified tag. Note that this option does not alter "
|
|
751
|
+
"tags assigned to the objects produced by this run, just "
|
|
752
|
+
"what existing objects are visible in the client API. You "
|
|
753
|
+
"can enable the global namespace with an empty string."
|
|
754
|
+
"--namespace=",
|
|
755
|
+
)
|
|
756
|
+
@click.pass_obj
|
|
757
|
+
def run(
|
|
758
|
+
obj,
|
|
759
|
+
tags=None,
|
|
760
|
+
max_workers=None,
|
|
761
|
+
max_num_splits=None,
|
|
762
|
+
max_log_size=None,
|
|
763
|
+
decospecs=None,
|
|
764
|
+
run_id_file=None,
|
|
765
|
+
runner_attribute_file=None,
|
|
766
|
+
user_namespace=None,
|
|
767
|
+
**kwargs
|
|
768
|
+
):
|
|
769
|
+
if user_namespace is not None:
|
|
770
|
+
namespace(user_namespace or None)
|
|
771
|
+
before_run(obj, tags, decospecs)
|
|
772
|
+
|
|
773
|
+
runtime = NativeRuntime(
|
|
774
|
+
obj.flow,
|
|
775
|
+
obj.graph,
|
|
776
|
+
obj.flow_datastore,
|
|
777
|
+
obj.metadata,
|
|
778
|
+
obj.environment,
|
|
779
|
+
obj.package,
|
|
780
|
+
obj.logger,
|
|
781
|
+
obj.entrypoint,
|
|
782
|
+
obj.event_logger,
|
|
783
|
+
obj.monitor,
|
|
784
|
+
max_workers=max_workers,
|
|
785
|
+
max_num_splits=max_num_splits,
|
|
786
|
+
max_log_size=max_log_size * 1024 * 1024,
|
|
787
|
+
)
|
|
788
|
+
write_latest_run_id(obj, runtime.run_id)
|
|
789
|
+
write_file(run_id_file, runtime.run_id)
|
|
790
|
+
|
|
791
|
+
obj.flow._set_constants(obj.graph, kwargs)
|
|
792
|
+
current._update_env(
|
|
793
|
+
{
|
|
794
|
+
"run_id": runtime.run_id,
|
|
795
|
+
}
|
|
796
|
+
)
|
|
797
|
+
_system_logger.log_event(
|
|
798
|
+
level="info",
|
|
799
|
+
module="metaflow.run",
|
|
800
|
+
name="start",
|
|
801
|
+
payload={
|
|
802
|
+
"msg": "Starting run",
|
|
803
|
+
},
|
|
804
|
+
)
|
|
805
|
+
with runtime.run_heartbeat():
|
|
806
|
+
runtime.print_workflow_info()
|
|
807
|
+
runtime.persist_constants()
|
|
808
|
+
|
|
809
|
+
if runner_attribute_file:
|
|
810
|
+
with open(runner_attribute_file, "w", encoding="utf-8") as f:
|
|
811
|
+
json.dump(
|
|
812
|
+
{
|
|
813
|
+
"run_id": runtime.run_id,
|
|
814
|
+
"flow_name": obj.flow.name,
|
|
815
|
+
"metadata": obj.metadata.metadata_str(),
|
|
816
|
+
},
|
|
817
|
+
f,
|
|
818
|
+
)
|
|
819
|
+
runtime.execute()
|
|
820
|
+
|
|
821
|
+
|
|
822
|
+
def write_file(file_path, content):
|
|
823
|
+
if file_path is not None:
|
|
824
|
+
with open(file_path, "w") as f:
|
|
825
|
+
f.write(str(content))
|
|
826
|
+
|
|
827
|
+
|
|
828
|
+
def before_run(obj, tags, decospecs):
|
|
829
|
+
validate_tags(tags)
|
|
830
|
+
|
|
831
|
+
# There's a --with option both at the top-level and for the run
|
|
832
|
+
# subcommand. Why?
|
|
833
|
+
#
|
|
834
|
+
# "run --with shoes" looks so much better than "--with shoes run".
|
|
835
|
+
# This is a very common use case of --with.
|
|
836
|
+
#
|
|
837
|
+
# A downside is that we need to have the following decorators handling
|
|
838
|
+
# in two places in this module and make sure _init_step_decorators
|
|
839
|
+
# doesn't get called twice.
|
|
840
|
+
|
|
841
|
+
# We want the order to be the following:
|
|
842
|
+
# - run level decospecs
|
|
843
|
+
# - top level decospecs
|
|
844
|
+
# - environment decospecs
|
|
845
|
+
all_decospecs = (
|
|
846
|
+
list(decospecs or [])
|
|
847
|
+
+ obj.tl_decospecs
|
|
848
|
+
+ list(obj.environment.decospecs() or [])
|
|
849
|
+
)
|
|
850
|
+
if all_decospecs:
|
|
851
|
+
decorators._attach_decorators(obj.flow, all_decospecs)
|
|
852
|
+
obj.graph = FlowGraph(obj.flow.__class__)
|
|
853
|
+
|
|
854
|
+
obj.check(obj.graph, obj.flow, obj.environment, pylint=obj.pylint)
|
|
855
|
+
# obj.environment.init_environment(obj.logger)
|
|
856
|
+
|
|
857
|
+
decorators._init_step_decorators(
|
|
858
|
+
obj.flow, obj.graph, obj.environment, obj.flow_datastore, obj.logger
|
|
859
|
+
)
|
|
860
|
+
|
|
861
|
+
obj.metadata.add_sticky_tags(tags=tags)
|
|
862
|
+
|
|
863
|
+
# Package working directory only once per run.
|
|
864
|
+
# We explicitly avoid doing this in `start` since it is invoked for every
|
|
865
|
+
# step in the run.
|
|
866
|
+
obj.package = MetaflowPackage(
|
|
867
|
+
obj.flow, obj.environment, obj.echo, obj.package_suffixes
|
|
868
|
+
)
|
|
869
|
+
|
|
870
|
+
|
|
223
871
|
@cli.command(help="Print the Metaflow version")
|
|
224
872
|
@click.pass_obj
|
|
225
873
|
def version(obj):
|
|
226
874
|
echo_always(obj.version)
|
|
227
875
|
|
|
228
876
|
|
|
229
|
-
|
|
230
|
-
# that no option conflict with the ones below
|
|
877
|
+
@tracing.cli_entrypoint("cli/start")
|
|
231
878
|
@decorators.add_decorator_options
|
|
232
|
-
@config_options
|
|
233
879
|
@click.command(
|
|
234
|
-
cls=
|
|
235
|
-
sources=[cli],
|
|
236
|
-
lazy_sources=plugins.get_plugin_cli_path(),
|
|
880
|
+
cls=click.CommandCollection,
|
|
881
|
+
sources=[cli] + plugins.get_plugin_cli(),
|
|
237
882
|
invoke_without_command=True,
|
|
238
883
|
)
|
|
239
|
-
@tracing.cli_entrypoint("cli/start")
|
|
240
|
-
# Quiet is eager to make sure it is available when processing --config options since
|
|
241
|
-
# we need it to construct a context to pass to any DeployTimeField for the default
|
|
242
|
-
# value.
|
|
243
884
|
@click.option(
|
|
244
885
|
"--quiet/--not-quiet",
|
|
245
886
|
show_default=True,
|
|
246
887
|
default=False,
|
|
247
888
|
help="Suppress unnecessary messages",
|
|
248
|
-
is_eager=True,
|
|
249
889
|
)
|
|
250
890
|
@click.option(
|
|
251
891
|
"--metadata",
|
|
@@ -261,14 +901,12 @@ def version(obj):
|
|
|
261
901
|
type=click.Choice(["local"] + [m.TYPE for m in ENVIRONMENTS]),
|
|
262
902
|
help="Execution environment type",
|
|
263
903
|
)
|
|
264
|
-
# See comment for --quiet
|
|
265
904
|
@click.option(
|
|
266
905
|
"--datastore",
|
|
267
906
|
default=DEFAULT_DATASTORE,
|
|
268
907
|
show_default=True,
|
|
269
908
|
type=click.Choice([d.TYPE for d in DATASTORES]),
|
|
270
909
|
help="Data backend type",
|
|
271
|
-
is_eager=True,
|
|
272
910
|
)
|
|
273
911
|
@click.option("--datastore-root", help="Root path for datastore")
|
|
274
912
|
@click.option(
|
|
@@ -305,15 +943,6 @@ def version(obj):
|
|
|
305
943
|
type=click.Choice(MONITOR_SIDECARS),
|
|
306
944
|
help="Monitoring backend type",
|
|
307
945
|
)
|
|
308
|
-
@click.option(
|
|
309
|
-
"--local-config-file",
|
|
310
|
-
type=LocalFileInput(exists=True, readable=True, dir_okay=False, resolve_path=True),
|
|
311
|
-
required=False,
|
|
312
|
-
default=None,
|
|
313
|
-
help="A filename containing the dumped configuration values. Internal use only.",
|
|
314
|
-
hidden=True,
|
|
315
|
-
is_eager=True,
|
|
316
|
-
)
|
|
317
946
|
@click.pass_context
|
|
318
947
|
def start(
|
|
319
948
|
ctx,
|
|
@@ -327,11 +956,9 @@ def start(
|
|
|
327
956
|
pylint=None,
|
|
328
957
|
event_logger=None,
|
|
329
958
|
monitor=None,
|
|
330
|
-
local_config_file=None,
|
|
331
|
-
config_file_options=None,
|
|
332
|
-
config_value_options=None,
|
|
333
959
|
**deco_options
|
|
334
960
|
):
|
|
961
|
+
global echo
|
|
335
962
|
if quiet:
|
|
336
963
|
echo = echo_dev_null
|
|
337
964
|
else:
|
|
@@ -346,27 +973,17 @@ def start(
|
|
|
346
973
|
echo(" executing *%s*" % ctx.obj.flow.name, fg="magenta", nl=False)
|
|
347
974
|
echo(" for *%s*" % resolve_identity(), fg="magenta")
|
|
348
975
|
|
|
349
|
-
# At this point, we are able to resolve the user-configuration options so we can
|
|
350
|
-
# process all those decorators that the user added that will modify the flow based
|
|
351
|
-
# on those configurations. It is important to do this as early as possible since it
|
|
352
|
-
# actually modifies the flow itself
|
|
353
|
-
|
|
354
|
-
# When we process the options, the first one processed will return None and the
|
|
355
|
-
# second one processed will return the actual options. The order of processing
|
|
356
|
-
# depends on what (and in what order) the user specifies on the command line.
|
|
357
|
-
config_options = config_file_options or config_value_options
|
|
358
|
-
ctx.obj.flow = ctx.obj.flow._process_config_decorators(config_options)
|
|
359
|
-
|
|
360
976
|
cli_args._set_top_kwargs(ctx.params)
|
|
361
977
|
ctx.obj.echo = echo
|
|
362
978
|
ctx.obj.echo_always = echo_always
|
|
363
979
|
ctx.obj.is_quiet = quiet
|
|
364
|
-
ctx.obj.graph = ctx.obj.flow.
|
|
980
|
+
ctx.obj.graph = FlowGraph(ctx.obj.flow.__class__)
|
|
365
981
|
ctx.obj.logger = logger
|
|
982
|
+
ctx.obj.check = _check
|
|
366
983
|
ctx.obj.pylint = pylint
|
|
367
|
-
ctx.obj.check = functools.partial(_check, echo)
|
|
368
984
|
ctx.obj.top_cli = cli
|
|
369
985
|
ctx.obj.package_suffixes = package_suffixes.split(",")
|
|
986
|
+
ctx.obj.reconstruct_cli = _reconstruct_cli
|
|
370
987
|
|
|
371
988
|
ctx.obj.environment = [
|
|
372
989
|
e for e in ENVIRONMENTS + [MetaflowEnvironment] if e.TYPE == environment
|
|
@@ -412,10 +1029,6 @@ def start(
|
|
|
412
1029
|
ctx.obj.monitor,
|
|
413
1030
|
)
|
|
414
1031
|
|
|
415
|
-
ctx.obj.config_options = config_options
|
|
416
|
-
|
|
417
|
-
decorators._init(ctx.obj.flow)
|
|
418
|
-
|
|
419
1032
|
# It is important to initialize flow decorators early as some of the
|
|
420
1033
|
# things they provide may be used by some of the objects initialized after.
|
|
421
1034
|
decorators._init_flow_decorators(
|
|
@@ -438,22 +1051,10 @@ def start(
|
|
|
438
1051
|
# initialize current and parameter context for deploy-time parameters
|
|
439
1052
|
current._set_env(flow=ctx.obj.flow, is_running=False)
|
|
440
1053
|
parameters.set_parameter_context(
|
|
441
|
-
ctx.obj.flow.name,
|
|
442
|
-
ctx.obj.echo,
|
|
443
|
-
ctx.obj.flow_datastore,
|
|
444
|
-
{
|
|
445
|
-
k: ConfigValue(v)
|
|
446
|
-
for k, v in ctx.obj.flow.__class__._flow_state.get(
|
|
447
|
-
_FlowState.CONFIGS, {}
|
|
448
|
-
).items()
|
|
449
|
-
},
|
|
1054
|
+
ctx.obj.flow.name, ctx.obj.echo, ctx.obj.flow_datastore
|
|
450
1055
|
)
|
|
451
1056
|
|
|
452
|
-
if (
|
|
453
|
-
hasattr(ctx, "saved_args")
|
|
454
|
-
and ctx.saved_args
|
|
455
|
-
and ctx.saved_args[0] not in ("run", "resume")
|
|
456
|
-
):
|
|
1057
|
+
if ctx.invoked_subcommand not in ("run", "resume"):
|
|
457
1058
|
# run/resume are special cases because they can add more decorators with --with,
|
|
458
1059
|
# so they have to take care of themselves.
|
|
459
1060
|
all_decospecs = ctx.obj.tl_decospecs + list(
|
|
@@ -461,7 +1062,6 @@ def start(
|
|
|
461
1062
|
)
|
|
462
1063
|
if all_decospecs:
|
|
463
1064
|
decorators._attach_decorators(ctx.obj.flow, all_decospecs)
|
|
464
|
-
decorators._init(ctx.obj.flow)
|
|
465
1065
|
# Regenerate graph if we attached more decorators
|
|
466
1066
|
ctx.obj.graph = FlowGraph(ctx.obj.flow.__class__)
|
|
467
1067
|
|
|
@@ -475,12 +1075,25 @@ def start(
|
|
|
475
1075
|
|
|
476
1076
|
# TODO (savin): Enable lazy instantiation of package
|
|
477
1077
|
ctx.obj.package = None
|
|
478
|
-
|
|
479
1078
|
if ctx.invoked_subcommand is None:
|
|
480
1079
|
ctx.invoke(check)
|
|
481
1080
|
|
|
482
1081
|
|
|
483
|
-
def
|
|
1082
|
+
def _reconstruct_cli(params):
|
|
1083
|
+
for k, v in params.items():
|
|
1084
|
+
if v:
|
|
1085
|
+
if k == "decospecs":
|
|
1086
|
+
k = "with"
|
|
1087
|
+
k = k.replace("_", "-")
|
|
1088
|
+
if not isinstance(v, tuple):
|
|
1089
|
+
v = [v]
|
|
1090
|
+
for value in v:
|
|
1091
|
+
yield "--%s" % k
|
|
1092
|
+
if not isinstance(value, bool):
|
|
1093
|
+
yield str(value)
|
|
1094
|
+
|
|
1095
|
+
|
|
1096
|
+
def _check(graph, flow, environment, pylint=True, warnings=False, **kwargs):
|
|
484
1097
|
echo("Validating your flow...", fg="magenta", bold=False)
|
|
485
1098
|
linter = lint.linter
|
|
486
1099
|
# TODO set linter settings
|