nxs-analysis-tools 0.1.2__py3-none-any.whl → 0.1.3__py3-none-any.whl

_meta/__init__.py

@@ -6,5 +6,5 @@ __author__ = 'Steven J. Gomez Alvarado'
 __email__ = 'stevenjgomez@ucsb.edu'
 __copyright__ = f"2023-2025, {__author__}"
 __license__ = 'MIT'
-__version__ = '0.1.2'
+__version__ = '0.1.3'
 __repo_url__ = 'https://github.com/stevenjgomez/nxs_analysis_tools'

nxs_analysis_tools/datareduction.py

@@ -104,8 +104,7 @@ def array_to_nxdata(array, data_template, signal_name=None):
     d = data_template
     if signal_name is None:
         signal_name = d.signal
-    return NXdata(NXfield(array, name=signal_name),
-                  tuple(d[d.axes[i]] for i in range(len(d.axes))))
+    return NXdata(NXfield(array, name=signal_name), d.nxaxes)
 
 
 def rebin_3d(array):
@@ -341,12 +340,12 @@ def plot_slice(data, X=None, Y=None, sum_axis=None, transpose=False, vmin=None,
 
     # If three-dimensional, demand sum_axis to reduce to two dimensions.
     if is_array and len(data.shape) == 3:
-        assert sum_axis is not None, "sum_axis must be specified when data is a 3D array"
+        assert sum_axis is not None, "sum_axis must be specified when data is 3D."
 
         data = data.sum(axis=sum_axis)
 
     if is_nxdata and len(data.shape) == 3:
-        assert sum_axis is not None, "sum_axis must be specified when data is a 3D array"
+        assert sum_axis is not None, "sum_axis must be specified when data is 3D."
 
         arr = data.nxsignal.nxdata
         arr = arr.sum(axis=sum_axis)
@@ -452,22 +451,22 @@ def plot_slice(data, X=None, Y=None, sum_axis=None, transpose=False, vmin=None,
     # Add tick marks all around
     ax.tick_params(direction='in', top=True, right=True, which='both')
 
-    # Set tick locations
-    if xticks is None:
-        # Add default minor ticks
+    # Automatically set tick locations, only if NXdata or if X,Y axes are provided for an array
+    if is_nxdata or (is_array and (X is not None and Y is not None)):
+        # Add default minor ticks on x
         ax.xaxis.set_minor_locator(MultipleLocator(1))
-    else:
-        # Otherwise use user provided values
-        ax.xaxis.set_major_locator(MultipleLocator(xticks))
-        ax.xaxis.set_minor_locator(MultipleLocator(1))
-    if yticks is None:
-        # Add default minor ticks
-        ax.yaxis.set_minor_locator(MultipleLocator(1))
-    else:
-        # Otherwise use user provided values
-        ax.yaxis.set_major_locator(MultipleLocator(yticks))
+
+        if xticks is not None:
+            # Use user provided values
+            ax.xaxis.set_major_locator(MultipleLocator(xticks))
+
+        # Add default minor ticks on y
         ax.yaxis.set_minor_locator(MultipleLocator(1))
 
+        if yticks is not None:
+            # Use user provided values
+            ax.yaxis.set_major_locator(MultipleLocator(yticks))
+
     # Apply transform to tick marks
     for i in range(0, len(ax.xaxis.get_ticklines())):
         # Tick marker

nxs_analysis_tools/pairdistribution.py

@@ -400,6 +400,8 @@ class Symmetrizer3D:
             The input 3D dataset to be symmetrized.
         """
 
+        assert data is not None, "Symmetrizer3D requires a 3D NXdata object for initialization."
+
         self.a, self.b, self.c, self.al, self.be, self.ga = [None] * 6
         self.a_star, self.b_star, self.c_star, self.al_star, self.be_star, self.ga_star = [None] * 6
         self.lattice_params = None

{nxs_analysis_tools-0.1.2.dist-info → nxs_analysis_tools-0.1.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nxs-analysis-tools
-Version: 0.1.2
+Version: 0.1.3
 Summary: Reduce and transform nexus format (.nxs) scattering data.
 Author-email: "Steven J. Gomez Alvarado" <stevenjgomez@ucsb.edu>
 License: MIT License
@@ -29,8 +29,9 @@ Project-URL: Download, https://pypi.org/project/nxs-analysis-tools/
 Project-URL: Bug Tracker, https://github.com/stevenjgomez/nxs_analysis_tools/issues
 Project-URL: Documentation, https://nxs-analysis-tools.readthedocs.io/en/stable/
 Project-URL: Source Code, https://github.com/stevenjgomez/nxs_analysis_tools
+Project-URL: DOI, https://doi.org/10.5281/zenodo.15186359
 Keywords: diffraction,xrd,nexusformat,nexus,nxs,scattering
-Classifier: Development Status :: 1 - Planning
+Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python
@@ -43,14 +44,15 @@ Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: matplotlib>=3.10.0
-Requires-Dist: numpy>=2.0.0
+Requires-Dist: numpy>=2.2.4
 Requires-Dist: ipython>=1.0.0
-Requires-Dist: pandas>=2.0.2
+Requires-Dist: pandas>=2.2.3
 Requires-Dist: nexusformat>=1.0.8
 Requires-Dist: lmfit>=1.2.1
 Requires-Dist: astropy>=6.1.7
 Requires-Dist: pyfftw>=0.13.1
 Requires-Dist: scipy>=1.14.1
+Requires-Dist: h5py>=3.13.0
 Provides-Extra: dev
 Requires-Dist: build>=0.8.0; extra == "dev"
 Requires-Dist: furo>=2022.6.21; extra == "dev"

nxs_analysis_tools-0.1.3.dist-info/RECORD

@@ -0,0 +1,11 @@
+_meta/__init__.py,sha256=9sAP3a5qQJ8SmGW6vPEuAuPqptruqhzo_1ZN5S-1s6I,346
+nxs_analysis_tools/__init__.py,sha256=3UFf4nxseTCfsPDSluxupmpd0Es55F9_du5T8-z4CsE,570
+nxs_analysis_tools/chess.py,sha256=ZtzxRRLRgy5boyo8W-9YBW257dfBvLDKrfGvNonbUmE,26925
+nxs_analysis_tools/datareduction.py,sha256=EVluTVGedr4R6PxZHTreyweN8IUuKPOIcx0ZDPL9SDE,49229
+nxs_analysis_tools/fitting.py,sha256=xkx66AJiJJO_kC1OBa3bcSDwVV20MEowRa59K-yFlqg,8551
+nxs_analysis_tools/pairdistribution.py,sha256=wDH5qGN3jpo4gSKnUBxNkGbX-qUOEQaSOyvOQ_V4IbE,60720
+nxs_analysis_tools-0.1.3.dist-info/licenses/LICENSE,sha256=bE6FnYixueAGAnEfUuumbkSeMgdBguAAkheVgjv47Jo,1086
+nxs_analysis_tools-0.1.3.dist-info/METADATA,sha256=QPwOEeXc1RwpgicYd51tQgFDS0bVm91fUn4e3JnSEZQ,4471
+nxs_analysis_tools-0.1.3.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
+nxs_analysis_tools-0.1.3.dist-info/top_level.txt,sha256=8U000GNPzo6T6pOMjRdgOSO5heMzLMGjkxa1CDtyMHM,25
+nxs_analysis_tools-0.1.3.dist-info/RECORD,,

nxs_analysis_tools-0.1.2.dist-info/RECORD

@@ -1,11 +0,0 @@
-_meta/__init__.py,sha256=KZAZ3taZzENOH0bYFMl4m-YethhYt9uXCCjml8-IRKc,346
-nxs_analysis_tools/__init__.py,sha256=3UFf4nxseTCfsPDSluxupmpd0Es55F9_du5T8-z4CsE,570
-nxs_analysis_tools/chess.py,sha256=ZtzxRRLRgy5boyo8W-9YBW257dfBvLDKrfGvNonbUmE,26925
-nxs_analysis_tools/datareduction.py,sha256=YJ32AuOyT80PXHJ14toibDu5BgWVdmjtdGaPJv75Z2M,49264
-nxs_analysis_tools/fitting.py,sha256=xkx66AJiJJO_kC1OBa3bcSDwVV20MEowRa59K-yFlqg,8551
-nxs_analysis_tools/pairdistribution.py,sha256=fV8ZTFBlcAvVHkt5fEPSKz2zR60kfXEqBuETnCtVdOQ,60622
-nxs_analysis_tools-0.1.2.dist-info/licenses/LICENSE,sha256=bE6FnYixueAGAnEfUuumbkSeMgdBguAAkheVgjv47Jo,1086
-nxs_analysis_tools-0.1.2.dist-info/METADATA,sha256=Ji8id41jvNChSZ4bSN6yKxk2MvPOloIFd1U4zg-XixA,4376
-nxs_analysis_tools-0.1.2.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
-nxs_analysis_tools-0.1.2.dist-info/top_level.txt,sha256=8U000GNPzo6T6pOMjRdgOSO5heMzLMGjkxa1CDtyMHM,25
-nxs_analysis_tools-0.1.2.dist-info/RECORD,,