nv-ingest-api 2025.4.15.dev20250415__py3-none-any.whl → 2025.4.17.dev20250417__py3-none-any.whl

nv_ingest_api/internal/extract/image/__init__.py

@@ -0,0 +1,3 @@
+# SPDX-FileCopyrightText: Copyright (c) 2024-25, NVIDIA CORPORATION & AFFILIATES.
+# All rights reserved.
+# SPDX-License-Identifier: Apache-2.0

nv_ingest_api/internal/extract/image/chart_extractor.py

@@ -0,0 +1,353 @@
+# SPDX-FileCopyrightText: Copyright (c) 2024-25, NVIDIA CORPORATION & AFFILIATES.
+# All rights reserved.
+# SPDX-License-Identifier: Apache-2.0
+
+import logging
+from concurrent.futures import ThreadPoolExecutor
+from typing import Any, Union
+from typing import Dict
+from typing import List
+from typing import Optional
+from typing import Tuple
+
+import numpy as np
+import pandas as pd
+
+from nv_ingest_api.internal.primitives.nim.model_interface.helpers import get_version
+from nv_ingest_api.internal.schemas.extract.extract_chart_schema import ChartExtractorSchema
+from nv_ingest_api.internal.schemas.meta.ingest_job_schema import IngestTaskChartExtraction
+from nv_ingest_api.util.image_processing.table_and_chart import join_yolox_graphic_elements_and_paddle_output
+from nv_ingest_api.util.image_processing.table_and_chart import process_yolox_graphic_elements
+from nv_ingest_api.internal.primitives.nim.model_interface.paddle import PaddleOCRModelInterface
+from nv_ingest_api.internal.primitives.nim import NimClient
+from nv_ingest_api.internal.primitives.nim.model_interface.yolox import YoloxGraphicElementsModelInterface
+from nv_ingest_api.util.image_processing.transforms import base64_to_numpy
+from nv_ingest_api.util.nim import create_inference_client
+
+PADDLE_MIN_WIDTH = 32
+PADDLE_MIN_HEIGHT = 32
+
+logger = logging.getLogger(f"morpheus.{__name__}")
+
+
+def _filter_valid_chart_images(
+    base64_images: List[str],
+) -> Tuple[List[str], List[np.ndarray], List[int], List[Tuple[str, Optional[Dict]]]]:
+    """
+    Filter base64-encoded images based on minimum dimensions for chart extraction.
+
+    Returns:
+      - valid_images: Base64 strings meeting size requirements.
+      - valid_arrays: Corresponding numpy arrays.
+      - valid_indices: Original indices of valid images.
+      - results: Initial results list where invalid images are set to (img, None).
+    """
+    results: List[Tuple[str, Optional[Dict]]] = [("", None)] * len(base64_images)
+    valid_images: List[str] = []
+    valid_arrays: List[np.ndarray] = []
+    valid_indices: List[int] = []
+
+    for i, img in enumerate(base64_images):
+        array = base64_to_numpy(img)
+        height, width = array.shape[0], array.shape[1]
+        if width >= PADDLE_MIN_WIDTH and height >= PADDLE_MIN_HEIGHT:
+            valid_images.append(img)
+            valid_arrays.append(array)
+            valid_indices.append(i)
+        else:
+            # Image is too small; mark as skipped.
+            results[i] = (img, None)
+    return valid_images, valid_arrays, valid_indices, results
+
+
+def _run_chart_inference(
+    yolox_client: Any,
+    paddle_client: Any,
+    valid_arrays: List[np.ndarray],
+    valid_images: List[str],
+    trace_info: Dict,
+) -> Tuple[List[Any], List[Any]]:
+    """
+    Run concurrent inference for chart extraction using YOLOX and Paddle.
+
+    Returns a tuple of (yolox_results, paddle_results).
+    """
+    data_yolox = {"images": valid_arrays}
+    data_paddle = {"base64_images": valid_images}
+
+    with ThreadPoolExecutor(max_workers=2) as executor:
+        future_yolox = executor.submit(
+            yolox_client.infer,
+            data=data_yolox,
+            model_name="yolox",
+            stage_name="chart_data_extraction",
+            max_batch_size=8,
+            trace_info=trace_info,
+        )
+        future_paddle = executor.submit(
+            paddle_client.infer,
+            data=data_paddle,
+            model_name="paddle",
+            stage_name="chart_data_extraction",
+            max_batch_size=1 if paddle_client.protocol == "grpc" else 2,
+            trace_info=trace_info,
+        )
+
+        try:
+            yolox_results = future_yolox.result()
+        except Exception as e:
+            logger.error(f"Error calling yolox_client.infer: {e}", exc_info=True)
+            raise
+
+        try:
+            paddle_results = future_paddle.result()
+        except Exception as e:
+            logger.error(f"Error calling paddle_client.infer: {e}", exc_info=True)
+            raise
+
+    return yolox_results, paddle_results
+
+
+def _validate_chart_inference_results(
+    yolox_results: Any, paddle_results: Any, valid_arrays: List[Any], valid_images: List[str]
+) -> Tuple[List[Any], List[Any]]:
+    """
+    Ensure inference results are lists and have expected lengths.
+
+    Raises:
+      ValueError if results do not match expected types or lengths.
+    """
+    if not (isinstance(yolox_results, list) and isinstance(paddle_results, list)):
+        raise ValueError("Expected list results from both yolox_client and paddle_client infer calls.")
+
+    if len(yolox_results) != len(valid_arrays):
+        raise ValueError(f"Expected {len(valid_arrays)} yolox results, got {len(yolox_results)}")
+    if len(paddle_results) != len(valid_images):
+        raise ValueError(f"Expected {len(valid_images)} paddle results, got {len(paddle_results)}")
+    return yolox_results, paddle_results
+
+
+def _merge_chart_results(
+    base64_images: List[str],
+    valid_indices: List[int],
+    yolox_results: List[Any],
+    paddle_results: List[Any],
+    initial_results: List[Tuple[str, Optional[Dict]]],
+) -> List[Tuple[str, Optional[Dict]]]:
+    """
+    Merge inference results into the initial results list using the original indices.
+
+    For each valid image, processes the results from both inference calls and updates the
+    corresponding entry in the results list.
+    """
+    for idx, (yolox_res, paddle_res) in enumerate(zip(yolox_results, paddle_results)):
+        # Unpack paddle result into bounding boxes and text predictions.
+        bounding_boxes, text_predictions = paddle_res
+        yolox_elements = join_yolox_graphic_elements_and_paddle_output(yolox_res, bounding_boxes, text_predictions)
+        chart_content = process_yolox_graphic_elements(yolox_elements)
+        original_index = valid_indices[idx]
+        initial_results[original_index] = (base64_images[original_index], chart_content)
+    return initial_results
+
+
+def _update_chart_metadata(
+    base64_images: List[str],
+    yolox_client: Any,
+    paddle_client: Any,
+    trace_info: Dict,
+    worker_pool_size: int = 8,  # Not currently used.
+) -> List[Tuple[str, Optional[Dict]]]:
+    """
+    Given a list of base64-encoded chart images, concurrently call both YOLOX and Paddle
+    inference services to extract chart data.
+
+    For each base64-encoded image, returns:
+      (original_image_str, joined_chart_content_dict)
+
+    Images that do not meet minimum size requirements are marked as skipped.
+    """
+    logger.debug("Running chart extraction using updated concurrency handling.")
+
+    # Initialize results with placeholders and filter valid images.
+    valid_images, valid_arrays, valid_indices, results = _filter_valid_chart_images(base64_images)
+
+    # Run concurrent inference only for valid images.
+    yolox_results, paddle_results = _run_chart_inference(
+        yolox_client=yolox_client,
+        paddle_client=paddle_client,
+        valid_arrays=valid_arrays,
+        valid_images=valid_images,
+        trace_info=trace_info,
+    )
+
+    # Validate that the returned inference results are lists of the expected length.
+    yolox_results, paddle_results = _validate_chart_inference_results(
+        yolox_results, paddle_results, valid_arrays, valid_images
+    )
+
+    # Merge the inference results into the results list.
+    return _merge_chart_results(base64_images, valid_indices, yolox_results, paddle_results, results)
+
+
+def _create_clients(
+    yolox_endpoints: Tuple[str, str],
+    yolox_protocol: str,
+    paddle_endpoints: Tuple[str, str],
+    paddle_protocol: str,
+    auth_token: str,
+) -> Tuple[NimClient, NimClient]:
+    # Obtain yolox_version
+    # Assuming that the grpc endpoint is at index 0
+    yolox_http_endpoint = yolox_endpoints[1]
+
+    try:
+        yolox_version = get_version(yolox_http_endpoint)
+        if not yolox_version:
+            logger.warning(
+                "Failed to obtain yolox-page-elements version from the endpoint. Falling back to the latest version."
+            )
+            yolox_version = None  # Default to the latest version
+    except Exception:
+        logger.warning(
+            "Failed to get yolox-page-elements version after 30 seconds. Falling back to the latest version."
+        )
+        yolox_version = None  # Default to the latest version
+
+    yolox_model_interface = YoloxGraphicElementsModelInterface(yolox_version=yolox_version)
+    paddle_model_interface = PaddleOCRModelInterface()
+
+    logger.debug(f"Inference protocols: yolox={yolox_protocol}, paddle={paddle_protocol}")
+
+    yolox_client = create_inference_client(
+        endpoints=yolox_endpoints,
+        model_interface=yolox_model_interface,
+        auth_token=auth_token,
+        infer_protocol=yolox_protocol,
+    )
+
+    paddle_client = create_inference_client(
+        endpoints=paddle_endpoints,
+        model_interface=paddle_model_interface,
+        auth_token=auth_token,
+        infer_protocol=paddle_protocol,
+    )
+
+    return yolox_client, paddle_client
+
+
+def extract_chart_data_from_image_internal(
+    df_extraction_ledger: pd.DataFrame,
+    task_config: Union[IngestTaskChartExtraction, Dict[str, Any]],
+    extraction_config: ChartExtractorSchema,
+    execution_trace_log: Optional[Dict] = None,
+) -> Tuple[pd.DataFrame, Dict]:
+    """
+    Extracts chart data from a DataFrame in a bulk fashion rather than row-by-row.
+
+    Parameters
+    ----------
+    df_extraction_ledger : pd.DataFrame
+        DataFrame containing the content from which chart data is to be extracted.
+    task_config : Dict[str, Any]
+        Dictionary containing task properties and configurations.
+    extraction_config : Any
+        The validated configuration object for chart extraction.
+    execution_trace_log : Optional[Dict], optional
+        Optional trace information for debugging or logging. Defaults to None.
+
+    Returns
+    -------
+    Tuple[pd.DataFrame, Dict]
+        A tuple containing the updated DataFrame and the trace information.
+
+    Raises
+    ------
+    Exception
+        If any error occurs during the chart data extraction process.
+    """
+    _ = task_config  # Unused variable
+
+    if execution_trace_log is None:
+        execution_trace_log = {}
+        logger.debug("No trace_info provided. Initialized empty trace_info dictionary.")
+
+    if df_extraction_ledger.empty:
+        return df_extraction_ledger, execution_trace_log
+
+    endpoint_config = extraction_config.endpoint_config
+    yolox_client, paddle_client = _create_clients(
+        endpoint_config.yolox_endpoints,
+        endpoint_config.yolox_infer_protocol,
+        endpoint_config.paddle_endpoints,
+        endpoint_config.paddle_infer_protocol,
+        endpoint_config.auth_token,
+    )
+
+    try:
+        # 1) Identify rows that meet criteria in a single pass
+        #    - metadata exists
+        #    - content_metadata.type == "structured"
+        #    - content_metadata.subtype == "chart"
+        #    - table_metadata not None
+        #    - base64_image not None or ""
+        def meets_criteria(row):
+            m = row.get("metadata", {})
+            if not m:
+                return False
+
+            content_md = m.get("content_metadata", {})
+            if (
+                content_md.get("type") == "structured"
+                and content_md.get("subtype") == "chart"
+                and m.get("table_metadata") is not None
+                and m.get("content") not in [None, ""]
+            ):
+                return True
+
+            return False
+
+        mask = df_extraction_ledger.apply(meets_criteria, axis=1)
+        valid_indices = df_extraction_ledger[mask].index.tolist()
+
+        # If no rows meet the criteria, just return.
+        if not valid_indices:
+            return df_extraction_ledger, {"trace_info": execution_trace_log}
+
+        # 2) Extract base64 images + keep track of row -> image mapping.
+        base64_images = []
+        for idx in valid_indices:
+            meta = df_extraction_ledger.at[idx, "metadata"]
+            base64_images.append(meta["content"])  # guaranteed by meets_criteria
+
+        # 3) Call our bulk _update_metadata to get all results.
+        bulk_results = _update_chart_metadata(
+            base64_images=base64_images,
+            yolox_client=yolox_client,
+            paddle_client=paddle_client,
+            worker_pool_size=endpoint_config.workers_per_progress_engine,
+            trace_info=execution_trace_log,
+        )
+
+        # 4) Write the results back to each row’s table_metadata
+        #    The order of base64_images in bulk_results should match their original
+        #    indices if we process them in the same order.
+        for row_id, idx in enumerate(valid_indices):
+            _, chart_content = bulk_results[row_id]
+            df_extraction_ledger.at[idx, "metadata"]["table_metadata"]["table_content"] = chart_content
+
+        return df_extraction_ledger, {"trace_info": execution_trace_log}
+
+    except Exception:
+        logger.error("Error occurred while extracting chart data.", exc_info=True)
+
+        raise
+
+    finally:
+        try:
+            if paddle_client is not None:
+                paddle_client.close()
+            if yolox_client is not None:
+                yolox_client.close()
+
+        except Exception as close_err:
+            logger.error(f"Error closing clients: {close_err}", exc_info=True)

nv_ingest_api/internal/extract/image/image_extractor.py

@@ -0,0 +1,204 @@
+# SPDX-FileCopyrightText: Copyright (c) 2024, NVIDIA CORPORATION & AFFILIATES.
+# All rights reserved.
+# SPDX-License-Identifier: Apache-2.0
+
+
+import base64
+import functools
+import io
+import logging
+from typing import Any, Union, Tuple
+from typing import Dict
+from typing import List
+from typing import Optional
+
+import pandas as pd
+from pydantic import BaseModel
+
+from nv_ingest_api.internal.extract.image.image_helpers.common import unstructured_image_extractor
+from nv_ingest_api.internal.schemas.extract.extract_image_schema import ImageExtractorSchema
+from nv_ingest_api.util.exception_handlers.decorators import unified_exception_handler
+
+logger = logging.getLogger(__name__)
+
+
+@unified_exception_handler
+def _decode_and_extract_from_image(
+    base64_row: pd.Series,
+    task_config: Dict[str, Any],
+    validated_extraction_config: ImageExtractorSchema,
+    execution_trace_log: Optional[List[Any]] = None,
+) -> Any:
+    """
+    Decode base64-encoded image content from a DataFrame row and extract data using a specified extraction method.
+
+    This function extracts the "content" (base64 string) from the row, prepares additional task parameters by
+    inserting the remaining row data under "row_data", and decodes the base64 content into a BytesIO stream.
+    It then determines which extraction method to use (defaulting to "image" if the specified method is not found)
+    and calls the corresponding function from the image_helpers module.
+
+    Parameters
+    ----------
+    base64_row : pd.Series
+        A pandas Series representing a row containing base64-encoded content under the key "content"
+        and optionally a "source_id" and "document_type".
+    task_config : Dict[str, Any]
+        A dictionary containing task properties. It should include:
+            - "method" (str): The extraction method to use (e.g., "image").
+            - "params" (dict): Additional parameters to pass to the extraction function.
+    validated_extraction_config : Any
+        A configuration object that contains an attribute `image_extraction_config` to be used when
+        extracting image content.
+    default : str, optional
+        The default extraction method to use if the specified method is not available (default is "image").
+    execution_trace_log : Optional[List[Any]], optional
+        An optional list of trace information to pass to the extraction function (default is None).
+
+    Returns
+    -------
+    Any
+        The extracted data from the decoded image content. The exact return type depends on the extraction method used.
+
+    Raises
+    ------
+    KeyError
+        If the "content" key is missing from `base64_row`.
+    Exception
+        For any other unhandled exceptions during extraction.
+    """
+
+    # Retrieve document type and initialize source_id.
+    document_type: Any = base64_row["document_type"]
+    source_id: Optional[Any] = None
+
+    try:
+        base64_content: str = base64_row["content"]
+    except KeyError as e:
+        err_msg = f"decode_and_extract: Missing 'content' key in row: {base64_row}"
+        logger.error(err_msg, exc_info=True)
+        raise KeyError(err_msg) from e
+
+    try:
+        # Prepare additional row data (exclude "content") and inject into task parameters.
+        row_data = base64_row.drop(labels=["content"], errors="ignore")
+        task_config.setdefault("params", {})["row_data"] = row_data
+
+        # Retrieve source_id if available.
+        source_id = base64_row.get("source_id", None)
+
+        # Decode the base64 image content.
+        image_bytes: bytes = base64.b64decode(base64_content)
+        image_stream: io.BytesIO = io.BytesIO(image_bytes)
+
+        # Determine the extraction method and parameters.
+        # extract_method: str = task_config.get("method", "image")
+        extract_params: Dict[str, Any] = task_config.get("params", {})
+        extract_params["document_type"] = document_type
+
+        try:
+            extract_text: bool = extract_params.pop("extract_text", False)
+            extract_images: bool = extract_params.pop("extract_images", False)
+            extract_tables: bool = extract_params.pop("extract_tables", False)
+            extract_charts: bool = extract_params.pop("extract_charts", False)
+            extract_infographics: bool = extract_params.pop("extract_infographics", False)
+        except KeyError as e:
+            raise ValueError(f"Missing required extraction flag: {e}")
+
+        logger.debug(
+            f"decode_and_extract: Extracting image content using image_extraction_config: "
+            f"{validated_extraction_config.image_extraction_config}"
+        )
+        if validated_extraction_config.image_extraction_config is not None:
+            extract_params["image_extraction_config"] = validated_extraction_config.image_extraction_config
+
+        if execution_trace_log is not None:
+            extract_params["trace_info"] = execution_trace_log
+
+        # func = getattr(image_helpers, extract_method, default)
+        extracted_data: Any = unstructured_image_extractor(
+            image_stream=image_stream,
+            extract_text=extract_text,
+            extract_images=extract_images,
+            extract_infographics=extract_infographics,
+            extract_tables=extract_tables,
+            extract_charts=extract_charts,
+            extraction_config=extract_params,
+            extraction_trace_log=execution_trace_log,
+        )
+
+        return extracted_data
+
+    except Exception as e:
+        err_msg = f"decode_and_extract: Unhandled exception for source '{source_id}'. Original error: {e}"
+        logger.error(err_msg, exc_info=True)
+        raise type(e)(err_msg) from e
+
+
+@unified_exception_handler
+def extract_primitives_from_image_internal(
+    df_extraction_ledger: pd.DataFrame,
+    task_config: Union[Dict[str, Any], BaseModel],
+    extraction_config: Any,
+    execution_trace_log: Optional[Dict[str, Any]] = None,
+) -> Tuple[pd.DataFrame, Dict[str, Any]]:
+    """
+    Process a DataFrame containing base64-encoded image files and extract primitives from each image.
+
+    This function applies the `decode_and_extract_from_image` routine to every row of the input DataFrame.
+    It then explodes any list results into separate rows, drops missing values, and compiles the extracted data
+    into a new DataFrame with columns "document_type", "metadata", and "uuid". In addition, trace information is
+    collected if provided.
+
+    Parameters
+    ----------
+    df_extraction_ledger : pd.DataFrame
+        Input DataFrame containing image files in base64 encoding. Expected to include columns 'source_id'
+        and 'content'.
+    task_config : Union[Dict[str, Any], BaseModel]
+        A dictionary or Pydantic model with instructions and parameters for the image processing task.
+    extraction_config : Any
+        A configuration object validated for processing images (e.g., containing `image_extraction_config`).
+    execution_trace_log : Optional[Dict[str, Any]], default=None
+        An optional dictionary for tracing and logging additional information during processing.
+
+    Returns
+    -------
+    pd.DataFrame
+        A DataFrame with the extracted image primitives. Expected columns include "document_type", "metadata",
+        and "uuid". Also returns a dictionary containing trace information under the key "trace_info".
+
+    Raises
+    ------
+    Exception
+        If an error occurs during the image processing stage, the exception is logged and re-raised.
+    """
+    logger.debug("process_image: Processing image content")
+    if execution_trace_log is None:
+        execution_trace_log = {}
+
+    if isinstance(task_config, BaseModel):
+        task_config = task_config.model_dump()
+
+    try:
+        # Create a partial function to decode and extract image data for each row.
+        _decode_and_extract = functools.partial(
+            _decode_and_extract_from_image,
+            task_config=task_config,
+            validated_extraction_config=extraction_config,
+            execution_trace_log=execution_trace_log,
+        )
+        logger.debug("process_image: Processing with method: %s", task_config.get("method", None))
+        sr_extraction = df_extraction_ledger.apply(_decode_and_extract, axis=1)
+        sr_extraction = sr_extraction.explode().dropna()
+
+        if not sr_extraction.empty:
+            extracted_df = pd.DataFrame(sr_extraction.to_list(), columns=["document_type", "metadata", "uuid"])
+        else:
+            extracted_df = pd.DataFrame({"document_type": [], "metadata": [], "uuid": []})
+
+        return extracted_df, {"trace_info": execution_trace_log}
+
+    except Exception as e:
+        err_msg = f"process_image: Unhandled exception in image extractor stage. Original error: {e}"
+        logger.exception(err_msg)
+        raise type(e)(err_msg) from e

nv_ingest_api/internal/extract/image/image_helpers/__init__.py

@@ -0,0 +1,3 @@
+# SPDX-FileCopyrightText: Copyright (c) 2024-25, NVIDIA CORPORATION & AFFILIATES.
+# All rights reserved.
+# SPDX-License-Identifier: Apache-2.0