numcodecs 0.15.1__cp313-cp313-macosx_11_0_arm64.whl → 0.16.0__cp313-cp313-macosx_11_0_arm64.whl
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- numcodecs/__init__.py +1 -1
- numcodecs/_shuffle.cpython-313-darwin.so +0 -0
- numcodecs/blosc.cpython-313-darwin.so +0 -0
- numcodecs/checksum32.py +22 -9
- numcodecs/compat_ext.cpython-313-darwin.so +0 -0
- numcodecs/fletcher32.cpython-313-darwin.so +0 -0
- numcodecs/jenkins.cpython-313-darwin.so +0 -0
- numcodecs/lz4.cpython-313-darwin.so +0 -0
- numcodecs/tests/common.py +0 -68
- numcodecs/tests/test_blosc.py +23 -14
- numcodecs/tests/test_vlen_bytes.py +2 -1
- numcodecs/version.py +9 -4
- numcodecs/vlen.cpython-313-darwin.so +0 -0
- numcodecs/zarr3.py +2 -2
- numcodecs/zstd.cpython-313-darwin.so +0 -0
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info}/METADATA +4 -3
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info}/RECORD +21 -21
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info}/WHEEL +2 -1
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info}/entry_points.txt +0 -0
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info/licenses}/LICENSE.txt +0 -0
- {numcodecs-0.15.1.dist-info → numcodecs-0.16.0.dist-info}/top_level.txt +0 -0
numcodecs/__init__.py
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numcodecs/checksum32.py
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@@ -1,11 +1,12 @@
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import abc
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import struct
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import zlib
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from collections.abc import Callable
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from contextlib import suppress
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from types import ModuleType
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from typing import
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from typing import Literal, Optional
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import numpy as np
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from typing_extensions import Buffer
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from .abc import Codec
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from .compat import ensure_contiguous_ndarray, ndarray_copy
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@@ -15,15 +16,11 @@ _crc32c: Optional[ModuleType] = None
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with suppress(ImportError):
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import crc32c as _crc32c # type: ignore[no-redef, unused-ignore]
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if TYPE_CHECKING: # pragma: no cover
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from typing_extensions import Buffer
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CHECKSUM_LOCATION = Literal['start', 'end']
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class Checksum32(Codec):
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class Checksum32(Codec, abc.ABC):
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# override in sub-class
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checksum: Callable[["Buffer", int], int] | None = None
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location: CHECKSUM_LOCATION = 'start'
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def __init__(self, location: CHECKSUM_LOCATION | None = None):
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@@ -67,6 +64,10 @@ class Checksum32(Codec):
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)
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return ndarray_copy(payload_view, out)
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@staticmethod
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@abc.abstractmethod
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def checksum(data: Buffer, value: int) -> int: ...
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class CRC32(Checksum32):
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"""Codec add a crc32 checksum to the buffer.
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"""
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codec_id = 'crc32'
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checksum = zlib.crc32
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location = 'start'
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@staticmethod
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def checksum(data: Buffer, value: int = 0) -> int:
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"""
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Thin wrapper around ``zlib.crc32``.
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"""
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return zlib.crc32(data, value)
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class Adler32(Checksum32):
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"""Codec add a adler32 checksum to the buffer.
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"""
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codec_id = 'adler32'
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checksum = zlib.adler32
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location = 'start'
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@staticmethod
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def checksum(data: Buffer, value: int = 1) -> int:
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"""
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Thin wrapper around ``zlib.adler32``.
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"""
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return zlib.adler32(data, value)
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class JenkinsLookup3(Checksum32):
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"""Bob Jenkin's lookup3 checksum with 32-bit output
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numcodecs/tests/common.py
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@@ -115,74 +115,6 @@ def check_encode_decode(arr, codec, precision=None):
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compare_arrays(arr, out, precision=precision)
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def check_encode_decode_partial(arr, codec, precision=None):
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# N.B., watch out here with blosc compressor, if the itemsize of
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# the source buffer is different then the results of encoding
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# (i.e., compression) may be different. Hence we *do not* require that
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# the results of encoding be identical for all possible inputs, rather
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# we just require that the results of the encode/decode round-trip can
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# be compared to the original array.
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itemsize = arr.itemsize
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start, nitems = 5, 10
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compare_arr = arr[start : start + nitems]
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# test encoding of numpy array
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enc = codec.encode(arr)
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dec = codec.decode_partial(enc, start, nitems)
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compare_arrays(compare_arr, dec, precision=precision)
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# out = np.empty_like(compare_arr)
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out = np.empty_like(compare_arr)
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print(len(out))
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# test partial decode of encoded bytes
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buf = arr.tobytes(order='A')
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enc = codec.encode(buf)
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dec = codec.decode_partial(enc, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test partial decode of encoded bytearray
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buf = bytearray(arr.tobytes(order='A'))
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enc = codec.encode(buf)
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dec = codec.decode_partial(enc, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test partial decode of encoded array.array
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buf = array.array('b', arr.tobytes(order='A'))
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enc = codec.encode(buf)
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dec = codec.decode_partial(enc, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# # decoding should support any object exporting the buffer protocol,
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# # setup
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enc_bytes = ensure_bytes(enc)
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# test decoding of raw bytes into numpy array
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dec = codec.decode_partial(enc_bytes, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test partial decoding of bytearray
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dec = codec.decode_partial(bytearray(enc_bytes), start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test partial decoding of array.array
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buf = array.array('b', enc_bytes)
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dec = codec.decode_partial(buf, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test decoding of numpy array into numpy array
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buf = np.frombuffer(enc_bytes, dtype='u1')
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dec = codec.decode_partial(buf, start * itemsize, nitems * itemsize, out=out)
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compare_arrays(compare_arr, dec, precision=precision)
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# test decoding directly into bytearray
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out = bytearray(compare_arr.nbytes)
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codec.decode_partial(enc_bytes, start * itemsize, nitems * itemsize, out=out)
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# noinspection PyTypeChecker
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compare_arrays(compare_arr, out, precision=precision)
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def assert_array_items_equal(res, arr):
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assert isinstance(res, np.ndarray)
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res = res.reshape(-1, order='A')
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numcodecs/tests/test_blosc.py
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check_backwards_compatibility,
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check_config,
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check_encode_decode,
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check_encode_decode_partial,
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check_err_decode_object_buffer,
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check_max_buffer_size,
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@pytest.mark.parametrize('codec', codecs)
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@pytest.mark.parametrize(
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'array',
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[
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pytest.param(x) if len(x.shape) == 1 else pytest.param(x, marks=[pytest.mark.xfail])
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for x in arrays
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],
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)
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_skip_null(codec)
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codec = Blosc(cname='zstd', clevel=3, shuffle=1)
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check_config(codec)
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_skip_null(codec)
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assert codec.max_buffer_size == 2**31 - 1
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check_max_buffer_size(codec)
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def test_typesize_explicit():
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arr = np.arange(100).astype("int64")
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itemsize = arr.itemsize
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codec_no_type_size = Blosc(shuffle=Blosc.SHUFFLE)
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codec_itemsize = Blosc(shuffle=Blosc.SHUFFLE, typesize=itemsize)
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encoded_without_itemsize = codec_no_type_size.encode(arr.tobytes())
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def test_typesize_less_than_1():
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with pytest.raises(ValueError, match=r"Cannot use typesize"):
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Blosc(shuffle=Blosc.SHUFFLE, typesize=0)
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compressor = Blosc(shuffle=Blosc.SHUFFLE)
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# not really something that should be done in practice, but good for testing.
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compressor.typesize = 0
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arr = np.arange(100)
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with pytest.raises(ValueError, match=r"Cannot use typesize"):
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compressor.encode(arr.tobytes())
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# TODO: fix this test on GitHub actions somehow...
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# See https://github.com/zarr-developers/numcodecs/issues/683
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@pytest.mark.
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@pytest.mark.skipif(sys.platform == "darwin", reason="Test is failing on macOS on GitHub actions.")
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def test_encode_none():
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codec = VLenBytes()
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numcodecs/version.py
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# file generated by
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# file generated by setuptools-scm
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__version_tuple__ = version_tuple = (0, 16, 0)
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numcodecs/zarr3.py
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def resolve_metadata(self, chunk_spec: ArraySpec) -> ArraySpec:
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return replace(chunk_spec, dtype=np.dtype(astype)) # type: ignore[
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: numcodecs
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Version: 0.
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Version: 0.16.0
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Summary: A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
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Maintainer-email: Alistair Miles <alimanfoo@googlemail.com>
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License: MIT
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Description-Content-Type: text/x-rst
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License-File: LICENSE.txt
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Requires-Dist: numpy>=1.24
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Requires-Dist: typing_extensions
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Requires-Dist: pcodec<0.4,>=0.3; extra == "pcodec"
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Provides-Extra: crc32c
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Requires-Dist: crc32c>=2.7; extra == "crc32c"
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Dynamic: license-file
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Numcodecs
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=========
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numcodecs-0.
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numcodecs-0.
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numcodecs-0.
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numcodecs-0.
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numcodecs-0.
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numcodecs-0.
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numcodecs/blosc.cpython-313-darwin.so,sha256=
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numcodecs-0.16.0.dist-info/RECORD,,
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numcodecs-0.16.0.dist-info/WHEEL,sha256=Cxq5pla4scSj9raD9htoFbIhfTk0lSQlQLVCyAjgIi4,136
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numcodecs-0.16.0.dist-info/entry_points.txt,sha256=3W3FHKrwE52X3fLq8KdioOtf93lh5KaoGV5t2D10DBI,919
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numcodecs-0.16.0.dist-info/top_level.txt,sha256=JkHllzt6IuVudg4Tk--wF-yfPPsdVOiMTag1tjGIihw,10
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numcodecs-0.16.0.dist-info/METADATA,sha256=-ZkkQ6ebbtSkYNiXx2UGU4fpAbdUH6ocVxEbbdxx0DI,2963
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numcodecs-0.16.0.dist-info/licenses/LICENSE.txt,sha256=lJysaEeeE7bJeSRjUVC04e9eaXZq2eRy6oWgjBV2u5Y,1124
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numcodecs/blosc.cpython-313-darwin.so,sha256=P1gvcXDm4XlefpchnDGWf3CYcgT_-ChZzF6g2xjHAkM,1041448
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numcodecs/lzma.py,sha256=6XeJ-c-lTJN1EVrIOb5cEFEiMGlNHsS4c_OentmUox0,2257
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numcodecs/astype.py,sha256=pfdFqjNvb-PETswa2_UxZm632O-y2Lex-g_68IJpiuk,2099
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numcodecs/gzip.py,sha256=DJuc87g8neqn-SYEeCEQwPSdEN5oZGgDUan9MTI6Fb4,1436
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numcodecs/lz4.cpython-313-darwin.so,sha256=
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numcodecs/lz4.cpython-313-darwin.so,sha256=bvG735daV5cCC7CBb6yj-TTCKpPqHpjGMVGDM0dyzBE,248296
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numcodecs/base64.py,sha256=79BSqVvloKc8JYenUQfqdPm0a0JAZhd9Zld7k5Cp2lc,752
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numcodecs/bz2.py,sha256=4Ups3IMVsjvBlXyaeYONPdE14TaK9V-4LH5LSNe7AGc,1174
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numcodecs/version.py,sha256=
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numcodecs/version.py,sha256=DiQpBIZMVT47CbF7vAc_z27p1BtVHJkNlV2_J-6KcLU,513
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numcodecs/compat.py,sha256=JadagE6pTEcrX3V8wDml0n1tdkHvOWo6D21J3a4P0mw,6505
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numcodecs/checksum32.py,sha256=
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numcodecs/vlen.cpython-313-darwin.so,sha256=
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numcodecs/checksum32.py,sha256=KoaT9cwXE-JEdwjEi6v5CM8HDgRcdqPm-G6IwEp45Po,5726
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numcodecs/vlen.cpython-313-darwin.so,sha256=oAcJdb6UmLZL5Vv_M6jUGtsELpjjBaxg93rKPWZ3JpI,261608
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numcodecs/ndarray_like.py,sha256=fVupUg_K_rDZNRlUmTiRp53OmF6YHb-yNyixJNFR8ME,1883
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numcodecs/quantize.py,sha256=4mPx4kWanv5wGa22HvEiP893xqG5dDDtN-oKChj6nfE,3016
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numcodecs/registry.py,sha256=oRN9uJsWIosZbAZFkOWyUos3GZ-h_zq_cN-t_uPLk0A,1864
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numcodecs/jenkins.cpython-313-darwin.so,sha256=
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numcodecs/jenkins.cpython-313-darwin.so,sha256=dKJ8s28TzYOQFOZnBTjFcVRZ-RAGlkgGGVRkmx4EHng,186784
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numcodecs/pickles.py,sha256=LtcMa6cK-V5TUYJNR4dRDsWWRmLfNv0syZddbrbRv3A,1290
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numcodecs/zstd.cpython-313-darwin.so,sha256=
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numcodecs/zstd.cpython-313-darwin.so,sha256=1sT4XiPRzCPXKcFhGiDm2usH2jUT9Sen_4BZrpXru6o,731224
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numcodecs/fixedscaleoffset.py,sha256=fQwP_H-P3Mq4_LXtMQw5CLYeMjCBUdTtV-AKWVAIzkY,4188
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numcodecs/__init__.py,sha256=
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numcodecs/__init__.py,sha256=cgA3s5JGgVs9lAu6olFajOWgHpsCYtnLih10kMBBxS0,3104
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numcodecs/bitround.py,sha256=4lei39ZG4G2GGkDxl12q29nR5_8a4Icx4T-OgP1A1D4,2845
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numcodecs/_shuffle.cpython-313-darwin.so,sha256=
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numcodecs/_shuffle.cpython-313-darwin.so,sha256=y_mq7GiRrtMUO-ldT1JrM3CS5jh90N3cuv6vzdbhgCM,182320
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numcodecs/zlib.py,sha256=gLPUICEQc5p6DICC_63nOsbUqxzJH_5ynuzenTQXzOQ,1049
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numcodecs/shuffle.py,sha256=hYOFJOCEeDSNI-TqT1JrbQxbprkQD4R8VfSzD4IPI3I,1575
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numcodecs/fletcher32.cpython-313-darwin.so,sha256=
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numcodecs/compat_ext.cpython-313-darwin.so,sha256=
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numcodecs/zarr3.py,sha256=
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numcodecs/fletcher32.cpython-313-darwin.so,sha256=8TJp6fCW91W2Dswxs-pRO6QUZkoKagaeFWosmq7sfbE,206256
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numcodecs/compat_ext.cpython-313-darwin.so,sha256=QC1cCIqAMdKkdSqQXOyhFyisj9Id3cdVFazxEaYFZec,56832
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numcodecs/zarr3.py,sha256=SG3H69Xj3jUwo2ArGOrPW3zZ0B_Hw4zcQf6Ve_GrpsE,14675
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numcodecs/delta.py,sha256=x0PjNiuX48rmh9M6ZHoYkI9bKOq00Aiyz_jLrVlAq8w,2791
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numcodecs/zfpy.py,sha256=--TCrXOsSJ-2uU_7d-0YwHpk8Hti98hofB4jht5helk,3900
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numcodecs/msgpacks.py,sha256=GkTcFJrhKdpWnwQn4-282q4_edqlzZFdJFux2LtNk30,2619
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@@ -59,7 +59,7 @@ numcodecs/tests/test_astype.py,sha256=Wu1HtHZA6K_rW-JCxSWmU4Wwp9U83JUbUZ2ro9xDk9
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numcodecs/tests/test_jenkins.py,sha256=DoOXdTLD25aXA0nwiO1zk_vG4N2UI6Wc3C72yqIByNc,4446
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numcodecs/tests/test_fletcher32.py,sha256=hNf2zSAi16k4222qI2k-n5X4GgswVBfOqvKHSgSoRxQ,1456
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numcodecs/tests/test_packbits.py,sha256=8B2sQnM-DiAEtehCEm5xm7fQ1xWm0rMk_z7Uk8OXvGI,989
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numcodecs/tests/common.py,sha256=
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numcodecs/tests/common.py,sha256=5U3kGYIpVLSBbjqRONDDZxzg2eIlTS5EVmn5Lzp9E4I,9336
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numcodecs/tests/test_base64.py,sha256=QseE5-aDwz7yv5-0dAG_6vTjeN3OpFvgcg8IhklRA4Y,2315
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numcodecs/tests/test_shuffle.py,sha256=uFWTuBbdcqwnWbyh2knwc46klZ00VekzWh8Ya0I2HiE,4659
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numcodecs/tests/test_fixedscaleoffset.py,sha256=3RclYFw3WFu36WUIciZ23gNIiBmzboXvrEugMw1311A,2536
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@@ -69,11 +69,11 @@ numcodecs/tests/test_json.py,sha256=od5MZbSclKFWM_RjS2DsVWGIYlJXG6-wm0yQLdkBTh0,
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numcodecs/tests/test_ndarray_like.py,sha256=Bh8wDqkbSL-yr_MDQqE5XUoWzZav5J_VzC8Lfv3BBlA,1273
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numcodecs/tests/test_vlen_array.py,sha256=QaWVuflGxQUFToVcWVIzZHG_b8Vm4JJG6mBZVGNasK0,2477
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numcodecs/tests/test_zstd.py,sha256=79R6VMhni-6kg9LmlmBzGe22HXhg0RvSVjw4jVNPMJQ,2610
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numcodecs/tests/test_vlen_bytes.py,sha256=
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numcodecs/tests/test_vlen_bytes.py,sha256=jmjWdWHhB2pbVKMCVlqwP0Ztnnc1UVZbA3rInucP6KE,2697
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numcodecs/tests/test_entrypoints.py,sha256=zWbyosPRhbSevwp4grlfjfnEyIneny-u7XmMe1xcoLI,504
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numcodecs/tests/test_zarr3_import.py,sha256=JBDyrL57lbZMI9axb9eA1OZnd_Lg-ppfsNV3VvxwVxk,332
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numcodecs/tests/test_checksum32.py,sha256=D0BV_p3XQ2Dv9jIoI9zEQel-PO25KWYIpUDgrhr6Cf8,4601
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numcodecs/tests/test_zfpy.py,sha256=g_2txraHDbnBPtbymJXsgAiD6MBH44-JYRkNx9tttYw,2762
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numcodecs/tests/test_blosc.py,sha256=
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numcodecs/tests/test_blosc.py,sha256=Ym1JtkbUhsXY_zEkyNU6lt4hbR_zZnM0WzbT33dZs7k,9496
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numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt,sha256=wel2k9KStuNez__clm2tjAwrcXiP17De8yNScHYtQZU,60
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numcodecs/tests/package_with_entrypoint/__init__.py,sha256=wLyrk73nqKO8rcFtA_sXlcC8PKMzdYbbBRY8eH8Xc10,212
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