numcodecs 0.12.1__cp311-cp311-win_amd64.whl → 0.13.0__cp311-cp311-win_amd64.whl

numcodecs/tests/test_vlen_array.py

@@ -7,19 +7,20 @@ try:
     from numcodecs.vlen import VLenArray
 except ImportError:  # pragma: no cover
     raise unittest.SkipTest("vlen-array not available")
-from numcodecs.tests.common import (check_config, check_repr,
-                                    check_encode_decode_array,
-                                    check_backwards_compatibility,
-                                    assert_array_items_equal)
+from numcodecs.tests.common import (
+    check_config,
+    check_repr,
+    check_encode_decode_array,
+    check_backwards_compatibility,
+    assert_array_items_equal,
+)
 
 
 arrays = [
-    np.array([np.array([1, 2, 3]),
-              np.array([4]),
-              np.array([5, 6])] * 300, dtype=object),
-    np.array([np.array([1, 2, 3]),
-              np.array([4]),
-              np.array([5, 6])] * 300, dtype=object).reshape(90, 10),
+    np.array([np.array([1, 2, 3]), np.array([4]), np.array([5, 6])] * 300, dtype=object),
+    np.array([np.array([1, 2, 3]), np.array([4]), np.array([5, 6])] * 300, dtype=object).reshape(
+        90, 10
+    ),
 ]
 
 
@@ -93,7 +94,5 @@ def test_encode_none():
     codec = VLenArray(int)
     enc = codec.encode(a)
     dec = codec.decode(enc)
-    expect = np.array([np.array([1, 3]),
-                       np.array([]),
-                       np.array([4, 7])], dtype=object)
+    expect = np.array([np.array([1, 3]), np.array([]), np.array([4, 7])], dtype=object)
     assert_array_items_equal(expect, dec)

numcodecs/tests/test_vlen_bytes.py

@@ -7,9 +7,14 @@ try:
     from numcodecs.vlen import VLenBytes
 except ImportError:  # pragma: no cover
     raise unittest.SkipTest("vlen-bytes not available")
-from numcodecs.tests.common import (check_config, check_repr, check_encode_decode_array,
-                                    check_backwards_compatibility, greetings,
-                                    assert_array_items_equal)
+from numcodecs.tests.common import (
+    check_config,
+    check_repr,
+    check_encode_decode_array,
+    check_backwards_compatibility,
+    greetings,
+    assert_array_items_equal,
+)
 
 
 greetings_bytes = [g.encode('utf-8') for g in greetings]
@@ -19,8 +24,9 @@ arrays = [
     np.array([b'foo', b'bar', b'baz'] * 300, dtype=object),
     np.array(greetings_bytes * 100, dtype=object),
     np.array([b'foo', b'bar', b'baz'] * 300, dtype=object).reshape(90, 10),
-    np.array(greetings_bytes * 1000, dtype=object).reshape(len(greetings_bytes), 100, 10,
-                                                           order='F'),
+    np.array(greetings_bytes * 1000, dtype=object).reshape(
+        len(greetings_bytes), 100, 10, order='F'
+    ),
 ]
 
 

numcodecs/tests/test_vlen_utf8.py

@@ -9,9 +9,14 @@ try:
     from numcodecs.vlen import VLenUTF8
 except ImportError:  # pragma: no cover
     raise unittest.SkipTest("vlen-utf8 not available")
-from numcodecs.tests.common import (check_config, check_repr, check_encode_decode_array,
-                                    check_backwards_compatibility, greetings,
-                                    assert_array_items_equal)
+from numcodecs.tests.common import (
+    check_config,
+    check_repr,
+    check_encode_decode_array,
+    check_backwards_compatibility,
+    greetings,
+    assert_array_items_equal,
+)
 
 
 arrays = [
@@ -77,8 +82,11 @@ def test_decode_errors():
         codec.decode(enc, out=np.zeros(10, dtype='i4'))
 
 
-def test_encode_utf8():
+@pytest.mark.parametrize("writable", [True, False])
+def test_encode_utf8(writable):
     a = np.array(['foo', None, 'bar'], dtype=object)
+    if not writable:
+        a.setflags(write=False)
     codec = VLenUTF8()
     enc = codec.encode(a)
     dec = codec.decode(enc)

numcodecs/tests/test_zfpy.py

@@ -38,12 +38,8 @@ arrays = [
     np.random.normal(loc=1000, scale=1, size=(100, 10)),
     np.random.normal(loc=1000, scale=1, size=(10, 10, 10)),
     np.random.normal(loc=1000, scale=1, size=(2, 5, 10, 10)),
-    np.random.randint(-(2 ** 31), -(2 ** 31) + 20, size=1000, dtype="i4").reshape(
-        100, 10
-    ),
-    np.random.randint(-(2 ** 63), -(2 ** 63) + 20, size=1000, dtype="i8").reshape(
-        10, 10, 10
-    ),
+    np.random.randint(-(2**31), -(2**31) + 20, size=1000, dtype="i4").reshape(100, 10),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype="i8").reshape(10, 10, 10),
 ]
 
 
@@ -72,9 +68,7 @@ def test_backwards_compatibility():
             codec = [code]
             check_backwards_compatibility(ZFPY.codec_id, arrays, codec)
         else:
-            check_backwards_compatibility(
-                ZFPY.codec_id, arrays[: len(arrays) - 2], codecs
-            )
+            check_backwards_compatibility(ZFPY.codec_id, arrays[: len(arrays) - 2], codecs)
 
 
 def test_err_decode_object_buffer():

numcodecs/tests/test_zlib.py

@@ -6,10 +6,14 @@ import pytest
 
 
 from numcodecs.zlib import Zlib
-from numcodecs.tests.common import (check_encode_decode, check_config, check_repr,
-                                    check_backwards_compatibility,
-                                    check_err_decode_object_buffer,
-                                    check_err_encode_object_buffer)
+from numcodecs.tests.common import (
+    check_encode_decode,
+    check_config,
+    check_repr,
+    check_backwards_compatibility,
+    check_err_decode_object_buffer,
+    check_err_encode_object_buffer,
+)
 
 
 codecs = [
@@ -35,10 +39,10 @@ arrays = [
     np.random.randint(0, 2**60, size=1000, dtype='u8').view('m8[ns]'),
     np.random.randint(0, 2**25, size=1000, dtype='u8').view('M8[m]'),
     np.random.randint(0, 2**25, size=1000, dtype='u8').view('m8[m]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('M8[ns]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('m8[ns]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('M8[m]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('m8[m]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('M8[ns]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('m8[ns]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('M8[m]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('m8[m]'),
 ]
 
 

numcodecs/tests/test_zstd.py

@@ -8,15 +8,17 @@ import pytest
 try:
     from numcodecs.zstd import Zstd
 except ImportError:  # pragma: no cover
-    pytest.skip(
-        "numcodecs.zstd not available", allow_module_level=True
-    )
+    pytest.skip("numcodecs.zstd not available", allow_module_level=True)
 
 
-from numcodecs.tests.common import (check_encode_decode, check_config, check_repr,
-                                    check_backwards_compatibility,
-                                    check_err_decode_object_buffer,
-                                    check_err_encode_object_buffer)
+from numcodecs.tests.common import (
+    check_encode_decode,
+    check_config,
+    check_repr,
+    check_backwards_compatibility,
+    check_err_decode_object_buffer,
+    check_err_encode_object_buffer,
+)
 
 
 codecs = [
@@ -27,6 +29,9 @@ codecs = [
     Zstd(level=10),
     Zstd(level=22),
     Zstd(level=100),
+    Zstd(checksum=True),
+    Zstd(level=0, checksum=True),
+    Zstd(level=22, checksum=True),
 ]
 
 
@@ -34,8 +39,8 @@ codecs = [
 # mix of shapes: 1D, 2D, 3D
 # mix of orders: C, F
 arrays = [
-    np.arange(1000, dtype='i4'),
-    np.linspace(1000, 1001, 1000, dtype='f8'),
+    np.arange(1000, dtype="i4"),
+    np.linspace(1000, 1001, 1000, dtype="f8"),
     np.random.normal(loc=1000, scale=1, size=(100, 10)),
     np.random.randint(0, 2, size=1000, dtype=bool).reshape(100, 10, order='F'),
     np.random.choice([b'a', b'bb', b'ccc'], size=1000).reshape(10, 10, 10),
@@ -43,10 +48,10 @@ arrays = [
     np.random.randint(0, 2**60, size=1000, dtype='u8').view('m8[ns]'),
     np.random.randint(0, 2**25, size=1000, dtype='u8').view('M8[m]'),
     np.random.randint(0, 2**25, size=1000, dtype='u8').view('m8[m]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('M8[ns]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('m8[ns]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('M8[m]'),
-    np.random.randint(-2**63, -2**63 + 20, size=1000, dtype='i8').view('m8[m]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('M8[ns]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('m8[ns]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('M8[m]'),
+    np.random.randint(-(2**63), -(2**63) + 20, size=1000, dtype='i8').view('m8[m]'),
 ]
 
 
@@ -74,3 +79,17 @@ def test_err_decode_object_buffer():
 
 def test_err_encode_object_buffer():
     check_err_encode_object_buffer(Zstd())
+
+
+def test_checksum():
+    data = np.arange(0, 64, dtype="uint8")
+    assert len(Zstd(level=0, checksum=False).encode(data)) + 4 == len(
+        Zstd(level=0, checksum=True).encode(data)
+    )
+
+
+def test_native_functions():
+    # Note, these assertions might need to be changed for new versions of zstd
+    assert Zstd.default_level == 3
+    assert Zstd.min_level == -131072
+    assert Zstd.max_level == 22

numcodecs/version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.12.1'
-__version_tuple__ = version_tuple = (0, 12, 1)
+__version__ = version = '0.13.0'
+__version_tuple__ = version_tuple = (0, 13, 0)

numcodecs/zfpy.py

@@ -1,12 +1,28 @@
 from contextlib import suppress
+from importlib.metadata import PackageNotFoundError, version
+import warnings
 
 _zfpy = None
-with suppress(ImportError):
-    import zfpy as _zfpy
 
+_zfpy_version: tuple = ()
+with suppress(PackageNotFoundError):
+    _zfpy_version = tuple(map(int, version("zfpy").split(".")))
+
+if _zfpy_version:
+    # Check NumPy version
+    _numpy_version: tuple = tuple(map(int, version("numpy").split('.')))
+    if _numpy_version >= (2, 0, 0) and _zfpy_version <= (1, 0, 1):  # pragma: no cover
+        _zfpy_version = ()
+        warnings.warn(
+            "NumPy version >= 2.0.0 detected. The zfpy library is incompatible with this version of NumPy. "
+            "Please downgrade to NumPy < 2.0.0 or wait for an update from zfpy.",
+            UserWarning,
+        )
+    else:
+        with suppress(ImportError):
+            import zfpy as _zfpy
 
 if _zfpy:
-
     from .abc import Codec
     from .compat import ndarray_copy, ensure_contiguous_ndarray, ensure_bytes
     import numpy as np
@@ -52,25 +68,25 @@ if _zfpy:
             self.precision = precision
 
         def encode(self, buf):
-
             # not flatten c-order array and raise exception for f-order array
             if not isinstance(buf, np.ndarray):
-                raise TypeError("The zfp codec does not support none numpy arrays."
-                                f" Your buffers were {type(buf)}.")
+                raise TypeError(
+                    "The zfp codec does not support none numpy arrays."
+                    f" Your buffers were {type(buf)}."
+                )
             if buf.flags.c_contiguous:
                 flatten = False
             else:
-                raise ValueError("The zfp codec does not support F order arrays. "
-                                 f"Your arrays flags were {buf.flags}.")
+                raise ValueError(
+                    "The zfp codec does not support F order arrays. "
+                    f"Your arrays flags were {buf.flags}."
+                )
             buf = ensure_contiguous_ndarray(buf, flatten=flatten)
 
             # do compression
-            return _zfpy.compress_numpy(
-                buf, write_header=True, **self.compression_kwargs
-            )
+            return _zfpy.compress_numpy(buf, write_header=True, **self.compression_kwargs)
 
         def decode(self, buf, out=None):
-
             # normalise inputs
             buf = ensure_bytes(buf)
             if out is not None:

numcodecs/zlib.py

@@ -21,7 +21,6 @@ class Zlib(Codec):
         self.level = level
 
     def encode(self, buf):
-
         # normalise inputs
         buf = ensure_contiguous_ndarray(buf)
 
@@ -30,7 +29,6 @@ class Zlib(Codec):
 
     # noinspection PyMethodMayBeStatic
     def decode(self, buf, out=None):
-
         # normalise inputs
         buf = ensure_contiguous_ndarray(buf)
         if out is not None:

{numcodecs-0.12.1.dist-info → numcodecs-0.13.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: numcodecs
-Version: 0.12.1
+Version: 0.13.0
 Summary: A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
 Maintainer-email: Alistair Miles <alimanfoo@googlemail.com>
 License: MIT
@@ -18,26 +18,29 @@ Classifier: Topic :: Software Development :: Libraries :: Python Modules
 Classifier: Operating System :: Unix
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3 :: Only
-Requires-Python: >=3.8
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 License-File: LICENSE.txt
 Requires-Dist: numpy >=1.7
 Provides-Extra: docs
 Requires-Dist: sphinx <7.0.0 ; extra == 'docs'
 Requires-Dist: sphinx-issues ; extra == 'docs'
+Requires-Dist: pydata-sphinx-theme ; extra == 'docs'
 Requires-Dist: numpydoc ; extra == 'docs'
 Requires-Dist: mock ; extra == 'docs'
 Provides-Extra: msgpack
 Requires-Dist: msgpack ; extra == 'msgpack'
+Provides-Extra: pcodec
+Requires-Dist: pcodec >=0.2.0 ; extra == 'pcodec'
 Provides-Extra: test
 Requires-Dist: coverage ; extra == 'test'
-Requires-Dist: flake8 ; extra == 'test'
 Requires-Dist: pytest ; extra == 'test'
 Requires-Dist: pytest-cov ; extra == 'test'
 Provides-Extra: test_extras
 Requires-Dist: importlib-metadata ; extra == 'test_extras'
 Provides-Extra: zfpy
 Requires-Dist: zfpy >=1.0.0 ; extra == 'zfpy'
+Requires-Dist: numpy <2.0.0 ; extra == 'zfpy'
 
 Numcodecs
 =========

numcodecs-0.13.0.dist-info/RECORD

@@ -0,0 +1,74 @@
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+numcodecs/_shuffle.cp311-win_amd64.pyd,sha256=zdOF8eisEf0gQ3nlaiKiYOJz6kIjD4aDjt5a2j-rsWY,134144
+numcodecs/abc.py,sha256=ZoXmpDHp-qCg3XzVw8nFU66GG6-h86SgRHKwLyikL4s,4626
+numcodecs/astype.py,sha256=GvuL9ppZJXE-UYvQ8MEUzAEKMAAKdIqpPjXnmYlVjFE,2249
+numcodecs/base64.py,sha256=E9166xLd0qzo9IZGb3PdP2jENITahjeD6krbochvBX8,811
+numcodecs/bitround.py,sha256=Zab-hK3mnUXa6MlbDk8pxG-DL5jb4P3f0dTnDOEMZ8Q,2905
+numcodecs/blosc.cp311-win_amd64.pyd,sha256=APMvsrQ_1VdLgAbPX2SEUXP7D1NCO_Q2MRZwqm9Ob5M,619520
+numcodecs/bz2.py,sha256=7bwN98knj2ln5WCPjVPVaHz5RM9jDI4Ld2it1lIWZmQ,1221
+numcodecs/categorize.py,sha256=-kSJTRL2fUZZ6AYQ7aNuzKKhtGi6Zgx5okg0BYMbPEo,3174
+numcodecs/checksum32.py,sha256=ISHgJMayILEw8lZNMs4vmGv1Ion2J40MfLubIXQ1zMA,3256
+numcodecs/compat.py,sha256=JUN87pkAx7jajmcOQ-ODrOCZQOA7cWkSbYhxfAsZwx4,6767
+numcodecs/compat_ext.cp311-win_amd64.pyd,sha256=libRQDJNes21ZWlIVLkNuM4BIgVEo9ZoefxeWiNNEr8,35328
+numcodecs/delta.py,sha256=w4y3Ex6-9zWctJMKLKctIctQAITRVDrEzFibMGWnInc,2915
+numcodecs/fixedscaleoffset.py,sha256=9VSM12-a4pNYXSp_AeVocwl-4ABZyjGKKfhmMFsJpAY,4400
+numcodecs/fletcher32.cp311-win_amd64.pyd,sha256=LRdBRbmXaysLp2CHEsPGdMtqsFYgDkL1foKzIZyCBx4,155136
+numcodecs/gzip.py,sha256=vPmEDJDkgW14icC-sGeQz1wDUqifhmRBC_B6V-vdEqY,1521
+numcodecs/jenkins.cp311-win_amd64.pyd,sha256=nWyy54Z2JALCHuk3gakg7nkWwTeMLIFZV5cQF1gGctc,144384
+numcodecs/json.py,sha256=SfTjqIVmaHe3Nvmu_pbIbn3alXJcEvmS9hhPDJFHNww,3477
+numcodecs/lz4.cp311-win_amd64.pyd,sha256=snAradQv3PSRgTNsCUI_sNaoEwkkb1uAw5tZsXHu1xk,73728
+numcodecs/lzma.py,sha256=zfOrLPwbmKU4lEZVz2wJRI3lOpB9a2EKm2Vgc0MiDS0,2328
+numcodecs/msgpacks.py,sha256=S3BMG6jusA81ZlUomZQG9OtbEVYKpXoMPmsHDCITdUQ,2735
+numcodecs/ndarray_like.py,sha256=A29suZPucCJdGbUz-jFjY5Oionopu66OLSvdu7lLEoA,1930
+numcodecs/packbits.py,sha256=mm1Zt_NMEF0LZlxfZ_5URl6OR-TaMxuWL8lgZOkkJqc,2118
+numcodecs/pcodec.py,sha256=HNcy_lxjZBQopg65aJric733PhOkUbCWc91DfTZxydo,3168
+numcodecs/pickles.py,sha256=bEOubwk7n2ta5MfSbst4LTaQ9BkNrNLBifFCpxu-nFg,1345
+numcodecs/quantize.py,sha256=UYXYx46H-JB5EHjRgvaR6Ud3VE9Kk-ewqnAHgORgOV4,3202
+numcodecs/registry.py,sha256=LRu9a_mJ30zVHczRHAmidVM1M_K1QWpcHTDne1nwrRg,1835
+numcodecs/shuffle.py,sha256=axL_pJ8q74of3yb01_E0n9tw0UxK6akqTVLyihycJD8,1655
+numcodecs/version.py,sha256=05lykHrH23QyCVjLX8ztt6Z-iY-ZTNO8aeHrS3ihXm4,429
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+numcodecs/zfpy.py,sha256=43HlmQ-rm57DYDrmBT9KoR_nko5t0qzAurMjcBnm_uI,3932
+numcodecs/zlib.py,sha256=611YAieWqFCPYMvTHoN2IiaAJAOCbEy6YPhso_aWe18,1093
+numcodecs/zstd.cp311-win_amd64.pyd,sha256=rP5822KE8kWmpb2Ul7E9-3i-WikiQJbwShoF68sZ2zg,459264
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+numcodecs/tests/test_base64.py,sha256=EYzsx_KA9KxEZtlNy70bicrOaArl-dIK8gqppdQWalA,2402
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+numcodecs/tests/test_checksum32.py,sha256=mp3rZ9ayaacAPa5jlWphMr_5RCrCxjeoTVvL4S9tl_0,1535
+numcodecs/tests/test_compat.py,sha256=wl1Bia4ofWWNJAeg4H0gZE-RiEsl6ZBmtoIeZFC2Ubo,3729
+numcodecs/tests/test_delta.py,sha256=5VvwrRkaEBr4VUhqvCYx5tLPNNqr7_9SZ7oQTREpiuA,1634
+numcodecs/tests/test_entrypoints.py,sha256=vfMtIQ7iAWQOVrs2E1s47xILXqLN9g6G_c_l8PPVTRg,532
+numcodecs/tests/test_entrypoints_backport.py,sha256=mhpt5b4tnAcZyoCU-GInDAseriHeZQxjG_1l3QQfE7c,1064
+numcodecs/tests/test_fixedscaleoffset.py,sha256=6DZEK-2f8uLd0CgCni69KOY3SvepoBlWvJzNTzK72KU,2322
+numcodecs/tests/test_fletcher32.py,sha256=J5ND8xcy4QQKYUYBaH_VyBzKm5biFoV9H5Fp9NsVe3s,1512
+numcodecs/tests/test_gzip.py,sha256=CTeOrKvSwmZAF9w3cPE4NImmbMs8J7EFDLYsIl7_2b8,3041
+numcodecs/tests/test_jenkins.py,sha256=tZV4dcuVlh3LYJ0ToxygRVF9MXIi4TMOq7xo7j6_kfE,4660
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{numcodecs-0.12.1.dist-info → numcodecs-0.13.0.dist-info}/WHEEL

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 Wheel-Version: 1.0
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 Root-Is-Purelib: false
 Tag: cp311-cp311-win_amd64
 

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