nstat-toolbox 0.4.1__py3-none-any.whl

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Files changed (75) hide show
  1. nstat/ConfidenceInterval.py +5 -0
  2. nstat/ConfigColl.py +5 -0
  3. nstat/CovColl.py +5 -0
  4. nstat/Covariate.py +5 -0
  5. nstat/DecodingAlgorithms.py +5 -0
  6. nstat/FitResSummary.py +5 -0
  7. nstat/FitResult.py +5 -0
  8. nstat/SignalObj.py +5 -0
  9. nstat/TrialConfig.py +5 -0
  10. nstat/__init__.py +139 -0
  11. nstat/_spike_train_impl.py +727 -0
  12. nstat/_trial_config_impl.py +369 -0
  13. nstat/analysis.py +1411 -0
  14. nstat/cif.py +1299 -0
  15. nstat/class_fidelity.py +119 -0
  16. nstat/compat/__init__.py +14 -0
  17. nstat/compat/matlab/__init__.py +18 -0
  18. nstat/confidence_interval.py +320 -0
  19. nstat/core.py +2170 -0
  20. nstat/data/__init__.py +1 -0
  21. nstat/data/manifest.json +29 -0
  22. nstat/data_manager.py +343 -0
  23. nstat/datasets.py +102 -0
  24. nstat/decoding.py +58 -0
  25. nstat/decoding_algorithms.py +7941 -0
  26. nstat/errors.py +41 -0
  27. nstat/events.py +119 -0
  28. nstat/extras/__init__.py +88 -0
  29. nstat/extras/_lazy.py +102 -0
  30. nstat/extras/decoding/__init__.py +23 -0
  31. nstat/extras/decoding/clusterless_bridge.py +380 -0
  32. nstat/extras/em/__init__.py +20 -0
  33. nstat/extras/em/dynamax_bridge.py +1792 -0
  34. nstat/extras/interop/__init__.py +20 -0
  35. nstat/extras/interop/neo.py +129 -0
  36. nstat/extras/interop/nwb.py +167 -0
  37. nstat/extras/interop/pynapple.py +164 -0
  38. nstat/extras/metrics/__init__.py +14 -0
  39. nstat/extras/metrics/spike_distances.py +108 -0
  40. nstat/extras/validation/__init__.py +16 -0
  41. nstat/extras/validation/nemos_bridge.py +157 -0
  42. nstat/extras/validation/pykalman_bridge.py +237 -0
  43. nstat/extras/validation/statsmodels_bridge.py +163 -0
  44. nstat/fit.py +2454 -0
  45. nstat/glm.py +205 -0
  46. nstat/history.py +332 -0
  47. nstat/install.py +204 -0
  48. nstat/linear_cif.py +480 -0
  49. nstat/matlab_engine.py +444 -0
  50. nstat/notebook_data.py +87 -0
  51. nstat/notebook_fidelity_audit.py +167 -0
  52. nstat/notebook_figures.py +120 -0
  53. nstat/notebook_parity.py +179 -0
  54. nstat/nspikeTrain.py +5 -0
  55. nstat/nstColl.py +10 -0
  56. nstat/nstat_install.py +12 -0
  57. nstat/paper_example_catalog.py +122 -0
  58. nstat/paper_examples.py +446 -0
  59. nstat/paper_examples_full.py +794 -0
  60. nstat/paper_figures.py +813 -0
  61. nstat/paper_gallery.py +201 -0
  62. nstat/parity_report.py +337 -0
  63. nstat/plot_style.py +141 -0
  64. nstat/signal.py +105 -0
  65. nstat/simulation.py +102 -0
  66. nstat/simulators.py +257 -0
  67. nstat/simulink_fidelity.py +89 -0
  68. nstat/spikes.py +37 -0
  69. nstat/trial.py +2997 -0
  70. nstat/zernike.py +118 -0
  71. nstat_toolbox-0.4.1.dist-info/METADATA +278 -0
  72. nstat_toolbox-0.4.1.dist-info/RECORD +75 -0
  73. nstat_toolbox-0.4.1.dist-info/WHEEL +5 -0
  74. nstat_toolbox-0.4.1.dist-info/entry_points.txt +3 -0
  75. nstat_toolbox-0.4.1.dist-info/top_level.txt +1 -0
@@ -0,0 +1,5 @@
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+ from __future__ import annotations
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+
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+ from .confidence_interval import ConfidenceInterval
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+
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+ __all__ = ["ConfidenceInterval"]
nstat/ConfigColl.py ADDED
@@ -0,0 +1,5 @@
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+ from __future__ import annotations
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+
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+ from .trial import ConfigCollection as ConfigColl
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+
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+ __all__ = ["ConfigColl"]
nstat/CovColl.py ADDED
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+ from __future__ import annotations
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+
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+ from .trial import CovariateCollection as CovColl
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+
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+ __all__ = ["CovColl"]
nstat/Covariate.py ADDED
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+ from __future__ import annotations
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+
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+ from .core import Covariate
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+
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+ __all__ = ["Covariate"]
@@ -0,0 +1,5 @@
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+ from __future__ import annotations
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+
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+ from .decoding_algorithms import DecodingAlgorithms
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+
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+ __all__ = ["DecodingAlgorithms"]
nstat/FitResSummary.py ADDED
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+ from __future__ import annotations
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+
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+ from .fit import FitResSummary
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+
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+ __all__ = ["FitResSummary"]
nstat/FitResult.py ADDED
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+ from __future__ import annotations
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+
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+ from .fit import FitResult
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+
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+ __all__ = ["FitResult"]
nstat/SignalObj.py ADDED
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+ from __future__ import annotations
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+
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+ from .core import SignalObj
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+
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+ __all__ = ["SignalObj"]
nstat/TrialConfig.py ADDED
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+ from __future__ import annotations
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+
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+ from .trial import TrialConfig
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+
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+ __all__ = ["TrialConfig"]
nstat/__init__.py ADDED
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+ import sys as _sys
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+ from types import ModuleType as _ModuleType
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+
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+ from .ConfidenceInterval import ConfidenceInterval
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+ from .ConfigColl import ConfigColl
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+ from .CovColl import CovColl
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+ from .SignalObj import SignalObj
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+ from .analysis import Analysis, psth
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+ from .cif import CIF, CIFModel
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+ from .linear_cif import LinearCIF
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+ from .data_manager import getPaperDataDirs, get_paper_data_dirs
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+ from .datasets import get_dataset_path, list_datasets, verify_checksums
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+ from .decoding import DecoderSuite
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+ from .decoding_algorithms import DecodingAlgorithms
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+ from .errors import DataNotFoundError, MatlabEngineError, ParityValidationError, UnsupportedWorkflowError
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+ from .matlab_engine import (
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+ MatlabFallbackWarning,
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+ get_matlab_nstat_path,
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+ is_matlab_available,
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+ set_matlab_nstat_path,
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+ )
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+ from .events import Events
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+ from .fit import (
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+ FitResSummary,
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+ FitResult,
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+ FitSummary,
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+ PopulationTimeRescaleResult,
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+ population_time_rescale,
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+ )
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+ from .glm import PoissonGLMResult, fit_poisson_glm
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+ from .history import History, HistoryBasis
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+ from .paper_examples_full import run_full_paper_examples
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+ from .plot_style import apply_plot_style, get_plot_style, set_plot_style
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+ from .signal import Covariate, Signal
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+ from .simulation import simulate_cif_from_stimulus, simulate_poisson_from_rate
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+ from .simulators import (
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+ NetworkSimulationResult,
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+ PointProcessSimulation,
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+ simulate_point_process,
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+ simulate_two_neuron_network,
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+ )
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+ from .spikes import SpikeTrain, SpikeTrainCollection
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+ from .trial import ConfigCollection, CovariateCollection, Trial, TrialConfig
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+ from .nspikeTrain import nspikeTrain
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+ from .nstColl import nstColl
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+
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+ from . import analysis as _analysis_module
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+ from . import cif as _cif_module
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+ from . import events as _events_module
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+ from . import history as _history_module
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+ from . import trial as _trial_module
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+
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+ _sys.modules.setdefault(f"{__name__}.Analysis", _analysis_module)
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+ _sys.modules.setdefault(f"{__name__}.CIF", _cif_module)
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+ _sys.modules.setdefault(f"{__name__}.Events", _events_module)
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+ _sys.modules.setdefault(f"{__name__}.History", _history_module)
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+ _sys.modules.setdefault(f"{__name__}.Trial", _trial_module)
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+
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+
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+ class _NstatModule(_ModuleType):
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+ def __getattribute__(self, name: str):
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+ value = super().__getattribute__(name)
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+ if isinstance(value, _ModuleType) and hasattr(value, name):
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+ return getattr(value, name)
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+ return value
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+
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+
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+ _sys.modules[__name__].__class__ = _NstatModule
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+
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+
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+ def __getattr__(name: str):
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+ if name == "nstat_install":
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+ from .install import nstat_install as _nstat_install
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+
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+ return _nstat_install
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+ if name == "nSTAT_Install":
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+ from .nstat_install import nSTAT_Install as _nSTAT_Install
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+
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+ return _nSTAT_Install
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+ raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
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+
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+ __all__ = [
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+ "Analysis",
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+ "CIF",
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+ "CIFModel",
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+ "LinearCIF",
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+ "ConfidenceInterval",
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+ "ConfigColl",
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+ "ConfigCollection",
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+ "Covariate",
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+ "CovColl",
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+ "CovariateCollection",
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+ "DataNotFoundError",
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+ "MatlabEngineError",
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+ "MatlabFallbackWarning",
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+ "DecoderSuite",
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+ "DecodingAlgorithms",
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+ "Events",
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+ "FitResSummary",
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+ "FitResult",
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+ "FitSummary",
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+ "PopulationTimeRescaleResult",
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+ "population_time_rescale",
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+ "History",
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+ "HistoryBasis",
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+ "NetworkSimulationResult",
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+ "ParityValidationError",
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+ "PointProcessSimulation",
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+ "PoissonGLMResult",
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+ "SignalObj",
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+ "Signal",
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+ "SpikeTrain",
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+ "apply_plot_style",
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+ "get_plot_style",
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+ "set_plot_style",
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+ "SpikeTrainCollection",
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+ "Trial",
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+ "TrialConfig",
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+ "UnsupportedWorkflowError",
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+ "get_matlab_nstat_path",
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+ "is_matlab_available",
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+ "set_matlab_nstat_path",
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+ "fit_poisson_glm",
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+ "getPaperDataDirs",
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+ "get_paper_data_dirs",
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+ "get_dataset_path",
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+ "list_datasets",
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+ "nSTAT_Install",
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+ "nstat_install",
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+ "psth",
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+ "run_full_paper_examples",
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+ "simulate_cif_from_stimulus",
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+ "simulate_point_process",
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+ "simulate_poisson_from_rate",
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+ "simulate_two_neuron_network",
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+ "nspikeTrain",
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+ "nstColl",
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+ "verify_checksums",
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+ ]