nstat-toolbox 0.4.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- nstat/ConfidenceInterval.py +5 -0
- nstat/ConfigColl.py +5 -0
- nstat/CovColl.py +5 -0
- nstat/Covariate.py +5 -0
- nstat/DecodingAlgorithms.py +5 -0
- nstat/FitResSummary.py +5 -0
- nstat/FitResult.py +5 -0
- nstat/SignalObj.py +5 -0
- nstat/TrialConfig.py +5 -0
- nstat/__init__.py +139 -0
- nstat/_spike_train_impl.py +727 -0
- nstat/_trial_config_impl.py +369 -0
- nstat/analysis.py +1411 -0
- nstat/cif.py +1299 -0
- nstat/class_fidelity.py +119 -0
- nstat/compat/__init__.py +14 -0
- nstat/compat/matlab/__init__.py +18 -0
- nstat/confidence_interval.py +320 -0
- nstat/core.py +2170 -0
- nstat/data/__init__.py +1 -0
- nstat/data/manifest.json +29 -0
- nstat/data_manager.py +343 -0
- nstat/datasets.py +102 -0
- nstat/decoding.py +58 -0
- nstat/decoding_algorithms.py +7941 -0
- nstat/errors.py +41 -0
- nstat/events.py +119 -0
- nstat/extras/__init__.py +88 -0
- nstat/extras/_lazy.py +102 -0
- nstat/extras/decoding/__init__.py +23 -0
- nstat/extras/decoding/clusterless_bridge.py +380 -0
- nstat/extras/em/__init__.py +20 -0
- nstat/extras/em/dynamax_bridge.py +1792 -0
- nstat/extras/interop/__init__.py +20 -0
- nstat/extras/interop/neo.py +129 -0
- nstat/extras/interop/nwb.py +167 -0
- nstat/extras/interop/pynapple.py +164 -0
- nstat/extras/metrics/__init__.py +14 -0
- nstat/extras/metrics/spike_distances.py +108 -0
- nstat/extras/validation/__init__.py +16 -0
- nstat/extras/validation/nemos_bridge.py +157 -0
- nstat/extras/validation/pykalman_bridge.py +237 -0
- nstat/extras/validation/statsmodels_bridge.py +163 -0
- nstat/fit.py +2454 -0
- nstat/glm.py +205 -0
- nstat/history.py +332 -0
- nstat/install.py +204 -0
- nstat/linear_cif.py +480 -0
- nstat/matlab_engine.py +444 -0
- nstat/notebook_data.py +87 -0
- nstat/notebook_fidelity_audit.py +167 -0
- nstat/notebook_figures.py +120 -0
- nstat/notebook_parity.py +179 -0
- nstat/nspikeTrain.py +5 -0
- nstat/nstColl.py +10 -0
- nstat/nstat_install.py +12 -0
- nstat/paper_example_catalog.py +122 -0
- nstat/paper_examples.py +446 -0
- nstat/paper_examples_full.py +794 -0
- nstat/paper_figures.py +813 -0
- nstat/paper_gallery.py +201 -0
- nstat/parity_report.py +337 -0
- nstat/plot_style.py +141 -0
- nstat/signal.py +105 -0
- nstat/simulation.py +102 -0
- nstat/simulators.py +257 -0
- nstat/simulink_fidelity.py +89 -0
- nstat/spikes.py +37 -0
- nstat/trial.py +2997 -0
- nstat/zernike.py +118 -0
- nstat_toolbox-0.4.1.dist-info/METADATA +278 -0
- nstat_toolbox-0.4.1.dist-info/RECORD +75 -0
- nstat_toolbox-0.4.1.dist-info/WHEEL +5 -0
- nstat_toolbox-0.4.1.dist-info/entry_points.txt +3 -0
- nstat_toolbox-0.4.1.dist-info/top_level.txt +1 -0
nstat/ConfigColl.py
ADDED
nstat/CovColl.py
ADDED
nstat/Covariate.py
ADDED
nstat/FitResSummary.py
ADDED
nstat/FitResult.py
ADDED
nstat/SignalObj.py
ADDED
nstat/TrialConfig.py
ADDED
nstat/__init__.py
ADDED
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import sys as _sys
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from types import ModuleType as _ModuleType
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from .ConfidenceInterval import ConfidenceInterval
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from .ConfigColl import ConfigColl
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from .CovColl import CovColl
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from .SignalObj import SignalObj
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from .analysis import Analysis, psth
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from .cif import CIF, CIFModel
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from .linear_cif import LinearCIF
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from .data_manager import getPaperDataDirs, get_paper_data_dirs
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from .datasets import get_dataset_path, list_datasets, verify_checksums
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from .decoding import DecoderSuite
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from .decoding_algorithms import DecodingAlgorithms
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from .errors import DataNotFoundError, MatlabEngineError, ParityValidationError, UnsupportedWorkflowError
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from .matlab_engine import (
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MatlabFallbackWarning,
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get_matlab_nstat_path,
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is_matlab_available,
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set_matlab_nstat_path,
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)
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from .events import Events
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from .fit import (
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FitResSummary,
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FitResult,
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FitSummary,
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PopulationTimeRescaleResult,
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population_time_rescale,
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)
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from .glm import PoissonGLMResult, fit_poisson_glm
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from .history import History, HistoryBasis
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from .paper_examples_full import run_full_paper_examples
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from .plot_style import apply_plot_style, get_plot_style, set_plot_style
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from .signal import Covariate, Signal
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from .simulation import simulate_cif_from_stimulus, simulate_poisson_from_rate
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from .simulators import (
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NetworkSimulationResult,
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PointProcessSimulation,
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simulate_point_process,
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simulate_two_neuron_network,
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)
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from .spikes import SpikeTrain, SpikeTrainCollection
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from .trial import ConfigCollection, CovariateCollection, Trial, TrialConfig
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from .nspikeTrain import nspikeTrain
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from .nstColl import nstColl
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from . import analysis as _analysis_module
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from . import cif as _cif_module
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from . import events as _events_module
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from . import history as _history_module
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from . import trial as _trial_module
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_sys.modules.setdefault(f"{__name__}.Analysis", _analysis_module)
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_sys.modules.setdefault(f"{__name__}.CIF", _cif_module)
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_sys.modules.setdefault(f"{__name__}.Events", _events_module)
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_sys.modules.setdefault(f"{__name__}.History", _history_module)
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_sys.modules.setdefault(f"{__name__}.Trial", _trial_module)
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class _NstatModule(_ModuleType):
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def __getattribute__(self, name: str):
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value = super().__getattribute__(name)
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if isinstance(value, _ModuleType) and hasattr(value, name):
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return getattr(value, name)
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return value
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_sys.modules[__name__].__class__ = _NstatModule
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def __getattr__(name: str):
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if name == "nstat_install":
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from .install import nstat_install as _nstat_install
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return _nstat_install
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if name == "nSTAT_Install":
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from .nstat_install import nSTAT_Install as _nSTAT_Install
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return _nSTAT_Install
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raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
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__all__ = [
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"Analysis",
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"CIF",
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"CIFModel",
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"LinearCIF",
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"ConfidenceInterval",
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"ConfigColl",
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"ConfigCollection",
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"Covariate",
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"CovColl",
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"CovariateCollection",
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"DataNotFoundError",
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"MatlabEngineError",
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"MatlabFallbackWarning",
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"DecoderSuite",
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"DecodingAlgorithms",
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"Events",
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"FitResSummary",
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"FitResult",
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"FitSummary",
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"PopulationTimeRescaleResult",
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"population_time_rescale",
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"History",
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"HistoryBasis",
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"NetworkSimulationResult",
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"ParityValidationError",
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"PointProcessSimulation",
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"PoissonGLMResult",
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"SignalObj",
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"Signal",
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"SpikeTrain",
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"apply_plot_style",
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"get_plot_style",
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"set_plot_style",
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"SpikeTrainCollection",
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"Trial",
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"TrialConfig",
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"UnsupportedWorkflowError",
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"get_matlab_nstat_path",
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"is_matlab_available",
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"set_matlab_nstat_path",
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"fit_poisson_glm",
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"getPaperDataDirs",
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"get_paper_data_dirs",
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"get_dataset_path",
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"list_datasets",
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"nSTAT_Install",
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"nstat_install",
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"psth",
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"run_full_paper_examples",
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"simulate_cif_from_stimulus",
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"simulate_point_process",
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"simulate_poisson_from_rate",
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"simulate_two_neuron_network",
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"nspikeTrain",
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"nstColl",
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"verify_checksums",
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]
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