np_codeocean 0.3.5__py3-none-any.whl → 0.3.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (23) hide show
  1. np_codeocean/__init__.py +1 -1
  2. np_codeocean/metadata/__init__.py +1 -1
  3. np_codeocean/metadata/common.py +1 -3
  4. np_codeocean/metadata/core.py +333 -331
  5. np_codeocean/metadata/dynamic_routing_task_etl.py +1 -1
  6. np_codeocean/metadata/model_templates/behavior_box.py +115 -115
  7. np_codeocean/metadata/model_templates/neuropixels_rig.py +544 -544
  8. np_codeocean/metadata/np.py +1 -1
  9. np_codeocean/metadata/rigs.py +1 -1
  10. np_codeocean/metadata/storage.py +78 -78
  11. np_codeocean/metadata/update.py +1 -2
  12. np_codeocean/metadata/utils.py +1 -1
  13. np_codeocean/np_session_utils.py +462 -385
  14. np_codeocean/scripts/upload_dynamic_routing_behavior.py +483 -413
  15. np_codeocean/scripts/upload_dynamic_routing_ecephys.py +279 -217
  16. np_codeocean/scripts/upload_split_recordings_example.py +39 -33
  17. np_codeocean/utils.py +671 -563
  18. {np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/METADATA +38 -6
  19. np_codeocean-0.3.7.dist-info/RECORD +23 -0
  20. {np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/WHEEL +2 -1
  21. {np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/entry_points.txt +0 -3
  22. np_codeocean-0.3.7.dist-info/top_level.txt +1 -0
  23. np_codeocean-0.3.5.dist-info/RECORD +0 -22
{np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/METADATA RENAMED
@@ -1,9 +1,11 @@
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- Metadata-Version: 2.1
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+ Metadata-Version: 2.4
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  Name: np_codeocean
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- Version: 0.3.5
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+ Version: 0.3.7
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  Summary: Tools for uploading and interacting with Mindscope Neuropixels experiments on Code Ocean
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- Author-Email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
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+ Author-email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>, Chris Mochizuki <chrism@alleninstitute.org>, Arjun Sridhar <arjun.sridhar@alleninstitute.org>
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  License: MIT
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+ Project-URL: Source, https://github.com/AllenInstitute/np_codeocean
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+ Project-URL: Issues, https://github.com/AllenInstitute/np_codeocean/issues
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  Classifier: Programming Language :: Python :: 3
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  Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
@@ -11,9 +13,8 @@ Classifier: Programming Language :: Python :: 3.11
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Operating System :: Microsoft :: Windows
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  Classifier: Operating System :: POSIX :: Linux
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- Project-URL: Source, https://github.com/AllenInstitute/np_codeocean
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- Project-URL: Issues, https://github.com/AllenInstitute/np_codeocean/issues
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  Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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  Requires-Dist: np_session>=0.6.44
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  Requires-Dist: np-tools>=0.1.23
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  Requires-Dist: np-config>=0.4.33
@@ -27,7 +28,15 @@ Requires-Dist: cryptography<43.0
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  Requires-Dist: aind-data-transfer-service>=1.15.0
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  Requires-Dist: aind-slurm-rest-v2==0.0.3
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  Requires-Dist: aind-codeocean-pipeline-monitor>=0.5.2
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- Description-Content-Type: text/markdown
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+ Provides-Extra: dev
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+ Requires-Dist: bump>=1.3.2; extra == "dev"
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+ Provides-Extra: dynamicrouting
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+ Requires-Dist: npc-lims>=0.1.154; extra == "dynamicrouting"
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+ Requires-Dist: npc-sessions>=0.0.273; extra == "dynamicrouting"
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+ Requires-Dist: aind-codeocean-pipeline-monitor[full]>=0.5.0; extra == "dynamicrouting"
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+ Requires-Dist: aind-metadata-mapper==0.18.2; extra == "dynamicrouting"
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+ Provides-Extra: openscope
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+ Requires-Dist: aind-metadata-mapper==0.18.1; extra == "openscope"
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  # np_codeocean
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  Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
@@ -35,6 +44,29 @@ Tools for uploading Mindscope Neuropixels experiments to S3 (for Code Ocean).
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  Requires running as admin on Windows in order to create remote-to-remote symlinks
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  on the Isilon.
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+ ## Install
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+ For Dynamic Routing:
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+ ```shell
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+ uv sync --extra dynamicrouting
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+ ```
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+
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+ For OpenScope:
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+ ```shell
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+ uv sync --extra openscope
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+ ```
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+
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+ ## Add dependencies
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+ For shared utilities:
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+ ```shell
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+ uv add <package-name>
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+ ```
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+
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+ For Dynamic Routing or OpenScope specific utilities:
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+ ```shell
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+ uv add <package-name> --optional <dynamicrouting|openscope>
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+ ```
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+
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+ ## Usage
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  - `upload` CLI tool is provided, which uses the
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  [`np_session`](https://github.com/AllenInstitute/np_session) interface to find
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  and upload
np_codeocean-0.3.7.dist-info/RECORD ADDED
@@ -0,0 +1,23 @@
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+ np_codeocean/__init__.py,sha256=nrKV3UyfevAzmYoG_rMtFCK9IYAqNgxZgnaMgy2X8rk,77
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+ np_codeocean/np_session_utils.py,sha256=YTEyVoVJEu058TgxH-bv8JSG-fSieE-KwyeTyI0KBcc,17615
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+ np_codeocean/utils.py,sha256=CltYRLgKFpdpoFLmMOM8px__tSb5LDoTK-mnNSkVDtY,25189
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+ np_codeocean/metadata/__init__.py,sha256=u5onYjl583sC5z6wZ5Qbjn4FXQDxfSdQUvPpY3uSdvs,73
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+ np_codeocean/metadata/common.py,sha256=WnP-GRe2I-0HTCnT9PRDN_ezSzDjZY1Nr10Tbckyrhc,582
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+ np_codeocean/metadata/core.py,sha256=2Jp1muw-ja_L-0F2PBoJez8rTZaMffm2Pie8M-WMuZM,10561
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+ np_codeocean/metadata/dynamic_routing_task_etl.py,sha256=SYG7WpormV7nx24SVtO6dhr-KyYkVHhIMeqcSRMIaT4,15649
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+ np_codeocean/metadata/np.py,sha256=BqCcny7EZJKRo_505vPkjn0xOXGTdxkhKYPsvb076-E,2647
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+ np_codeocean/metadata/rigs.py,sha256=uS2mIgJzfWRK365uJHB4O68AUFh9KKL9ln2AR88vai8,2532
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+ np_codeocean/metadata/storage.py,sha256=bxSkvJ-tImNOY8jjxY6zdvAAiz-OwvArwib9TO6bC_Q,2044
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+ np_codeocean/metadata/update.py,sha256=Jz4V8psrh8R4SGiAP1GCcDNyRiKcunqNlV2XmGq1umQ,5211
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+ np_codeocean/metadata/utils.py,sha256=s7CiBInQUIabcfgqFnihRPc1GJmbUmzA60ZfJA23OpA,4319
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+ np_codeocean/metadata/model_templates/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ np_codeocean/metadata/model_templates/behavior_box.py,sha256=Y2TQlEG1b-JdyFleb3_vwoIrWgPj9Fsy2l_zevEzWfY,3804
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+ np_codeocean/metadata/model_templates/neuropixels_rig.py,sha256=bNVnuA3ta9S0luwYmZA93TCP6CubSn1c2o7eVgIyC74,21716
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+ np_codeocean/scripts/upload_dynamic_routing_behavior.py,sha256=O5NVcPfjTjBCr6nQudoG9Ae0iVfCLweG5v9OuMh6WD4,17285
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+ np_codeocean/scripts/upload_dynamic_routing_ecephys.py,sha256=brqYJKH1i5hYRWuUn97aDrFmZo7oCkay080Cxg57sQo,10598
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+ np_codeocean/scripts/upload_split_recordings_example.py,sha256=P-sqZYbGDdHCCsyvBOIZbGE7Wl8qzih1mBCXaRbyU_g,1479
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+ np_codeocean-0.3.7.dist-info/METADATA,sha256=8euKZp8UeMe91SYP0qlLKEhJIgXPxhgeSHNgvlW2Ip4,3574
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+ np_codeocean-0.3.7.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ np_codeocean-0.3.7.dist-info/entry_points.txt,sha256=amIcPQMDvpAFwEKWIxsPSUNarfqQTCpZnFXp0CQUYWw,234
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+ np_codeocean-0.3.7.dist-info/top_level.txt,sha256=8VaE78lNdJcexaBdvtl5tMgsvD42Nfg0xplSPst4jHI,13
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+ np_codeocean-0.3.7.dist-info/RECORD,,
{np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/WHEEL RENAMED
@@ -1,4 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: pdm-backend (2.4.5)
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+ Generator: setuptools (80.10.2)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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+
{np_codeocean-0.3.5.dist-info → np_codeocean-0.3.7.dist-info}/entry_points.txt RENAMED
@@ -2,6 +2,3 @@
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  upload_dr_behavior = np_codeocean.scripts.upload_dynamic_routing_behavior:main
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  upload_dr_ecephys = np_codeocean.scripts.upload_dynamic_routing_ecephys:main
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  upload_sessions = np_codeocean.scripts.upload_sessions:main
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-
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- [gui_scripts]
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-
np_codeocean-0.3.7.dist-info/top_level.txt ADDED
@@ -0,0 +1 @@
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+ np_codeocean
np_codeocean-0.3.5.dist-info/RECORD DELETED
@@ -1,22 +0,0 @@
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- np_codeocean-0.3.5.dist-info/METADATA,sha256=3oJYeLJGvWqBbbT_uMQ0gZSjumGWvVV_qgMUAFQd00E,2758
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- np_codeocean-0.3.5.dist-info/WHEEL,sha256=9P2ygRxDrTJz3gsagc0Z96ukrxjr-LFBGOgv3AuKlCA,90
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- np_codeocean-0.3.5.dist-info/entry_points.txt,sha256=p32aRkIjrFa4KtUbq2E6ZMYBVNRUw3U8ZIarvwNkK1E,250
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- np_codeocean/__init__.py,sha256=ED7YOu-3AIQIEML9jPT9bQ690lfhYZNiOB4QhnJ8r8U,76
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- np_codeocean/metadata/__init__.py,sha256=jayhwvrb4fZYODtiVkJBXEYYkLJ_5SNNQ5WW21bsx2s,72
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- np_codeocean/metadata/common.py,sha256=ZOAe8MJJwNtBt9Voqm4MsA-xZCOrzCKkc_rku5A2yNA,584
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- np_codeocean/metadata/core.py,sha256=ap8tJQHb21PBuKoFLY36WdbbnAxpnWiHkTfz4ywRPgs,10877
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- np_codeocean/metadata/dynamic_routing_task_etl.py,sha256=jtIdDaJxC3YjyXNYas7WxpgqkIsWyMWIPspY_X2SZgI,15648
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- np_codeocean/metadata/model_templates/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- np_codeocean/metadata/model_templates/behavior_box.py,sha256=jQBEa67lDA7yZQ-HnUuGRhLLNcEv9YMm6H4scEE8qBo,3919
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- np_codeocean/metadata/model_templates/neuropixels_rig.py,sha256=-kwCc-FM-gctrPbaMovSQTNAsgBv3NLAlMce8cbAGaY,22260
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- np_codeocean/metadata/np.py,sha256=rxWpsCSi_HHyVWiYu9J4ylVLD-Ic2WZCWRohFOu_Zn8,2646
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- np_codeocean/metadata/rigs.py,sha256=Xq3BWvz0pxbkVA1UN9EFprbHA4hYaiSAFk82pXUfdLQ,2531
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- np_codeocean/metadata/storage.py,sha256=b7vivpO1E42xoqfLdomAOU-FER4VB3-cUmjTwUQNxNE,2123
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- np_codeocean/metadata/update.py,sha256=x2hploIM7AXmX5DaapaNsojJ7E8s_UmTDfVuGRWiyHY,5211
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- np_codeocean/metadata/utils.py,sha256=X6CVxgemeCaXiGnt35AHqvSCz0p5keJHHGkIgvYDq5E,4318
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- np_codeocean/np_session_utils.py,sha256=VtNGoeOGO0dwbyQ54Whwc-UWMF0QYjsKZYii5_fe-RE,17483
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- np_codeocean/scripts/upload_dynamic_routing_behavior.py,sha256=7b3wIhuQ4JXsX2eEYUE4wEUvoRlXB62OFPg8jHKQ3Tw,17246
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- np_codeocean/scripts/upload_dynamic_routing_ecephys.py,sha256=Fv8FBdn3wfoh0oaFGl_3h6f-CbNhYEfwS9YmdESbMT8,10290
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- np_codeocean/scripts/upload_split_recordings_example.py,sha256=1_aqoBxAkB_VpRKYqyPsEQBDGvgyAHXAkIJA0ZT2Vb0,1490
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- np_codeocean/utils.py,sha256=efXyKhjdskxfzWjuU4d0JkzhUGQhRNsIncT4FdcL370,24928
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- np_codeocean-0.3.5.dist-info/RECORD,,