np-workflows 1.6.89__py3-none-any.whl

np_workflows-1.6.89.dist-info/METADATA

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+Metadata-Version: 2.1
+Name: np-workflows
+Version: 1.6.89
+Summary: Ecephys and behavior workflows for the Mindscope Neuropixels team.
+Author-Email: Ben Hardcastle <ben.hardcastle@alleninstitute.org>
+License: MIT
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX :: Linux
+Project-URL: Repository, https://github.com/AllenInstitute/np_workflows
+Project-URL: Issues, https://github.com/AllenInstitute/np_workflows/issues
+Requires-Python: ==3.11.*
+Requires-Dist: np-services>=0.1.69
+Requires-Dist: np-session>=0.6.48
+Requires-Dist: np-config>=0.4.33
+Requires-Dist: ipywidgets>=7
+Requires-Dist: pydantic>=2
+Requires-Dist: jupyterlab>=3.6
+Requires-Dist: ipylab>=0.6.0
+Requires-Dist: np-tools>=0.1.24
+Requires-Dist: np-jobs>=0.0.3
+Requires-Dist: universal-pathlib>=0.1.0
+Requires-Dist: s3fs>=2023.6.0
+Requires-Dist: npc-shields>=0.1.10
+Requires-Dist: npc-sessions>=0.0.225
+Requires-Dist: np-codeocean[dynamic-routing-metadata]>=0.2.1
+Requires-Dist: panel>=1.4.5
+Requires-Dist: aind-session>=0.1.20
+Requires-Dist: jupyter-bokeh>=4.0.5
+Provides-Extra: dev
+Requires-Dist: blue>=0.9.1; extra == "dev"
+Requires-Dist: pytest>=7.2.2; extra == "dev"
+Requires-Dist: mypy>=1.1.1; extra == "dev"
+Requires-Dist: coverage[toml]>=7.2.2; extra == "dev"
+Requires-Dist: pytest-cov>=4.0.0; extra == "dev"
+Requires-Dist: bump>=1.3.2; extra == "dev"
+Requires-Dist: types-backports>=0.1.3; extra == "dev"
+Requires-Dist: ruff>=0.0.260; extra == "dev"
+Description-Content-Type: text/markdown
+
+# np_workflows
+
+This package contains all the Python code required to run Mindscope Neuropixels
+experiments.
+
+[![PyPI](https://img.shields.io/pypi/v/np-workflows.svg?label=PyPI&color=blue)](https://pypi.org/project/np-workflows/)
+[![Python version](https://img.shields.io/pypi/pyversions/np-workflows)](https://pypi.org/project/np-workflows/)
+
+<!-- [![Coverage](https://img.shields.io/codecov/c/github/alleninstitute/np_workflows?logo=codecov)](https://app.codecov.io/github/AllenInstitute/np_workflows) -->
+[![CI/CD](https://img.shields.io/github/actions/workflow/status/alleninstitute/np_workflows/publish.yml?label=CI/CD&logo=github)](https://github.com/alleninstitute/np_workflows/actions/workflows/publish.yml)
+[![GitHub issues](https://img.shields.io/github/issues/alleninstitute/np_workflows?logo=github)](https://github.com/alleninstitute/np_workflows/issues)
+
+Experiment workflows and related tasks are coordinated by Jupyter notebooks maintained here:
+https://github.com/AllenInstitute/np_notebooks
+
+Running the notebooks requires a Python environment with:
+- Python >= 3.11
+- np_workflows
+- Jupyter / JupyterLab
+
+```
+git clone https://github.com/AllenInstitute/np_notebooks
+conda create -n workflows python=3.11
+pip install np_workflows
+pip install jupyterlab
+```
+
+Keep the `np_workflows` package up-to-date by running `pip install
+np_workflows -U` before each use
+
+To develop this package `git clone` then `pdm install`
+
+## NP. rig setup
+.venv is currently used, with PDM to update packages before each experiment:
+1. install JupyterLab desktop (Win 64-bit)
+2. clone `np_notebooks` (not `np_workflows`) `cd c:\Users\svc_neuropix\Documents\github & git clone https://github.com/AllenInstitute/np_notebooks`
+5. find the path to python.exe 3.11.*, or install it manually
+6. create a new venv in the `np_notebooks` dir: `cd np_notebooks & path-to-python.exe -m venv .venv`
+7. activate venv: `.venv\scripts\activate` (terminal should now report `(np_notebooks-3.11)`)
+8. install PDM in venv: `path-to-python.exe -m pip install pdm`
+9. install `np_notebooks` requirements: `pdm install`
+10. in JupyterLab, set the default to Python environment to use `c:\Users\svc_neuropix\Documents\github\np_notebooks\.venv\scripts\python.exe`
+11. open up any workflow in the `np_notebooks` dir and check that the initial cell with imports works

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np_workflows-1.6.89.dist-info/WHEEL

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np_workflows-1.6.89.dist-info/entry_points.txt

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