np-services 0.1.59__py3-none-any.whl → 0.1.73__py3-none-any.whl

np_services/utils.py

@@ -1,168 +1,168 @@
-import contextlib
-import datetime
-import functools
-import logging
-import math
-import os
-import pathlib
-import shutil
-import subprocess
-import sys
-import time
-from typing import Any, Generator, Literal, Mapping, Optional, Sequence, Type
-
-import np_config
-import np_logging
-
-import np_services.protocols as protocols
-import np_services.resources.zro as zro
-
-logger = np_logging.getLogger(__name__)
-
-
-def config_from_zk(rig: Optional[Literal[0, 1, 2]] = None) -> Mapping[str, Any]:
-    "Common `services` config plus rig-specific `services`"
-    common_config = np_config.from_zk("/projects/np_workflows/defaults/configuration")[
-        "services"
-    ]
-
-    if rig:
-        rig_config = np_config.Rig(rig).config["services"]
-    else:
-        rig_config = np_config.Rig().config["services"]
-
-    for k, v in rig_config.items():
-        common_config[k] = common_config.get(k, {}) | v
-    return common_config
-
-
-def start_rsc_app(host, app_id) -> None:
-    rsc_node = zro.Proxy(host, 6000)
-    if rsc_node.p_status().get(app_id) == 0:
-        logger.info("Launching %s on %s via RSC", app_id, host)
-        rsc_node.p_start(app_id)
-        time.sleep(1)
-        if rsc_node.p_status().get(app_id) == 0:
-            logger.warning("%s not confirmed as launched - may be slow to start", app_id)
-            return
-    logger.info("%s is running on %s", app_id, host)
-    
-def kill_rsc_app(host, app_id) -> None:
-    "Does the same as the `kill` action in the RSC gui"
-    rsc_node = zro.Proxy(host, 6000)
-    rsc_node.p_stop(app_id)
-    time.sleep(1)
-    if rsc_node.p_status().get(app_id) != 0:
-        logger.warning("%s not confirmed as killed - may be slow to shutdown", app_id)
-        return
-    logger.info("%s killed on %s", app_id, host)
-
-
-def start_rsc_apps() -> None:
-    rsc_app_ids_required = np_config.Rig().config["rsc_app_ids_required"]
-    rig = np_config.Rig()
-    for host in (rig.Sync, rig.Stim, rig.Mon, rig.Acq):
-        rsc_node = zro.Proxy(host, 6000)
-        status = rsc_node.p_status()
-        if any(
-            apps_required_in_node := [_ for _ in rsc_app_ids_required if _ in status]
-        ):
-            for app in apps_required_in_node:
-                rsc_node.p_start(app)
-
-@contextlib.contextmanager
-def stop_on_error(*objs: protocols.Stoppable, reraise=True):
-    for obj in objs:
-        if not isinstance(obj, protocols.Stoppable):
-            raise TypeError(f"{obj} does not support stop()")
-    try:
-        yield
-    except Exception as exc:
-        with contextlib.suppress(Exception):
-            for obj in objs:
-                obj.stop()
-                logger.info("%s interrupted by error and stopped", obj.__name__)
-                obj.exc = exc
-        if reraise:
-            raise exc
-        logger.error("Error suppressed: continuing despite raised exception", exc_info=exc)
-
-def is_online(host: str) -> bool:
-    "Use OS's `ping` cmd to check if `host` is online."
-    command = ["ping", "-n" if "win" in sys.platform else "-c", "1", host]
-    try:
-        return subprocess.call(command, stdout=subprocess.PIPE, timeout=1.0) == 0
-    except subprocess.TimeoutExpired:
-        return False
-
-
-def unc_to_local(path: pathlib.Path) -> pathlib.Path:
-    "Convert UNC path to local path if on Windows."
-    if "win" not in sys.platform:
-        return path
-    comp = os.environ["COMPUTERNAME"]
-    if comp in path.drive:
-        drive = path.drive.split("\\")[-1]
-        drive = drive[:-1] if drive[-1] == "$" else drive
-        drive = drive + ":" if drive[-1] != ":" else drive
-        drive += "\\"
-        path = pathlib.Path(drive, path.relative_to(path.drive))
-    return path
-
-
-def free_gb(path: str | bytes | os.PathLike) -> float:
-    "Return free space at `path`, to .1 GB. Raises FileNotFoundError if `path` not accessible."
-    path = pathlib.Path(path)
-    path = unc_to_local(path)
-    return round(shutil.disk_usage(path).free / 1e9, 1)
-
-
-def get_files_created_between(
-    path: str | bytes | os.PathLike,
-    glob: str = "*",
-    start: float | datetime.datetime = 0,
-    end: Optional[float | datetime.datetime] = None,
-) -> list[pathlib.Path]:
-    path = pathlib.Path(path)
-    if not path.is_dir():
-        path = path.parent
-    if not end:
-        end = time.time()
-    start = start.timestamp() if isinstance(start, datetime.datetime) else start
-    end = end.timestamp() if isinstance(end, datetime.datetime) else end
-    ctime = lambda x: x.stat().st_ctime
-    files = (file for file in path.glob(glob) if int(start) <= ctime(file) <= end)
-    return sorted(files, key=ctime)
-
-
-def is_file_growing(path: str | bytes | os.PathLike) -> bool:
-    "Compares size of most recent .sync data file at two time-points - will block for up to 20s depending on file-size."
-    path = pathlib.Path(path)
-    size_0 = path.stat().st_size
-    # for sync: file is appended periodically in chunks that scale non-linearly with size
-    if ".sync" == path.suffix:
-        time.sleep(2 * math.log10(size_0))
-    else:
-        time.sleep(0.5 * math.log10(size_0))
-    if path.stat().st_size == size_0:
-        return False
-    return True
-
-
-def normalize_time(t) -> str: 
-    """
-    >>> normalize_time(datetime.datetime(2023, 2, 14, 13, 30, 00))
-    '20230214133000'
-    >>> normalize_time(1676410200.0)
-    '20230214133000'
-    >>> normalize_time(1676410200)
-    '20230214133000'
-    >>> normalize_time('1676410200.0')
-    '20230214133000'
-    >>> normalize_time('1676410200')
-    '20230214133000'
-    >>> normalize_time('2023-02-14T13:30:00')
-    '20230214133000'
-    """
-    # moved to np_config Feb 2023
+import contextlib
+import datetime
+import functools
+import logging
+import math
+import os
+import pathlib
+import shutil
+import subprocess
+import sys
+import time
+from typing import Any, Generator, Literal, Mapping, Optional, Sequence, Type
+
+import np_config
+import np_logging
+
+import np_services.protocols as protocols
+import np_services.resources.zro as zro
+
+logger = np_logging.getLogger(__name__)
+
+
+def config_from_zk(rig: Optional[Literal[0, 1, 2]] = None) -> Mapping[str, Any]:
+    "Common `services` config plus rig-specific `services`"
+    common_config = np_config.from_zk("/projects/np_workflows/defaults/configuration")[
+        "services"
+    ]
+
+    if rig:
+        rig_config = np_config.Rig(rig).config["services"]
+    else:
+        rig_config = np_config.Rig().config["services"]
+
+    for k, v in rig_config.items():
+        common_config[k] = common_config.get(k, {}) | v
+    return common_config
+
+
+def start_rsc_app(host, app_id) -> None:
+    rsc_node = zro.Proxy(host, 6000)
+    if rsc_node.p_status().get(app_id) == 0:
+        logger.info("Launching %s on %s via RSC", app_id, host)
+        rsc_node.p_start(app_id)
+        time.sleep(1)
+        if rsc_node.p_status().get(app_id) == 0:
+            logger.warning("%s not confirmed as launched - may be slow to start", app_id)
+            return
+    logger.info("%s is running on %s", app_id, host)
+    
+def kill_rsc_app(host, app_id) -> None:
+    "Does the same as the `kill` action in the RSC gui"
+    rsc_node = zro.Proxy(host, 6000)
+    rsc_node.p_stop(app_id)
+    time.sleep(1)
+    if rsc_node.p_status().get(app_id) != 0:
+        logger.warning("%s not confirmed as killed - may be slow to shutdown", app_id)
+        return
+    logger.info("%s killed on %s", app_id, host)
+
+
+def start_rsc_apps() -> None:
+    rsc_app_ids_required = np_config.Rig().config["rsc_app_ids_required"]
+    rig = np_config.Rig()
+    for host in (rig.Sync, rig.Stim, rig.Mon, rig.Acq):
+        rsc_node = zro.Proxy(host, 6000)
+        status = rsc_node.p_status()
+        if any(
+            apps_required_in_node := [_ for _ in rsc_app_ids_required if _ in status]
+        ):
+            for app in apps_required_in_node:
+                rsc_node.p_start(app)
+
+@contextlib.contextmanager
+def stop_on_error(*objs: protocols.Stoppable, reraise=True):
+    for obj in objs:
+        if not isinstance(obj, protocols.Stoppable):
+            raise TypeError(f"{obj} does not support stop()")
+    try:
+        yield
+    except Exception as exc:
+        with contextlib.suppress(Exception):
+            for obj in objs:
+                obj.stop()
+                logger.info("%s interrupted by error and stopped", obj.__name__)
+                obj.exc = exc
+        if reraise:
+            raise exc
+        logger.error("Error suppressed: continuing despite raised exception", exc_info=exc)
+
+def is_online(host: str) -> bool:
+    "Use OS's `ping` cmd to check if `host` is online."
+    command = ["ping", "-n" if "win" in sys.platform else "-c", "1", host]
+    try:
+        return subprocess.call(command, stdout=subprocess.PIPE, timeout=1.0) == 0
+    except subprocess.TimeoutExpired:
+        return False
+
+
+def unc_to_local(path: pathlib.Path) -> pathlib.Path:
+    "Convert UNC path to local path if on Windows."
+    if "win" not in sys.platform:
+        return path
+    comp = os.environ["COMPUTERNAME"]
+    if comp in path.drive:
+        drive = path.drive.split("\\")[-1]
+        drive = drive[:-1] if drive[-1] == "$" else drive
+        drive = drive + ":" if drive[-1] != ":" else drive
+        drive += "\\"
+        path = pathlib.Path(drive, path.relative_to(path.drive))
+    return path
+
+
+def free_gb(path: str | bytes | os.PathLike) -> float:
+    "Return free space at `path`, to .1 GB. Raises FileNotFoundError if `path` not accessible."
+    path = pathlib.Path(path)
+    path = unc_to_local(path)
+    return round(shutil.disk_usage(path).free / 1e9, 1)
+
+
+def get_files_created_between(
+    path: str | bytes | os.PathLike,
+    glob: str = "*",
+    start: float | datetime.datetime = 0,
+    end: Optional[float | datetime.datetime] = None,
+) -> list[pathlib.Path]:
+    path = pathlib.Path(path)
+    if not path.is_dir():
+        path = path.parent
+    if not end:
+        end = time.time()
+    start = start.timestamp() if isinstance(start, datetime.datetime) else start
+    end = end.timestamp() if isinstance(end, datetime.datetime) else end
+    ctime = lambda x: x.stat().st_ctime
+    files = (file for file in path.glob(glob) if int(start) <= ctime(file) <= end)
+    return sorted(files, key=ctime)
+
+
+def is_file_growing(path: str | bytes | os.PathLike) -> bool:
+    "Compares size of most recent .sync data file at two time-points - will block for up to 20s depending on file-size."
+    path = pathlib.Path(path)
+    size_0 = path.stat().st_size
+    # for sync: file is appended periodically in chunks that scale non-linearly with size
+    if ".sync" == path.suffix:
+        time.sleep(2 * math.log10(size_0))
+    else:
+        time.sleep(0.5 * math.log10(size_0))
+    if path.stat().st_size == size_0:
+        return False
+    return True
+
+
+def normalize_time(t) -> str: 
+    """
+    >>> normalize_time(datetime.datetime(2023, 2, 14, 13, 30, 00))
+    '20230214133000'
+    >>> normalize_time(1676410200.0)
+    '20230214133000'
+    >>> normalize_time(1676410200)
+    '20230214133000'
+    >>> normalize_time('1676410200.0')
+    '20230214133000'
+    >>> normalize_time('1676410200')
+    '20230214133000'
+    >>> normalize_time('2023-02-14T13:30:00')
+    '20230214133000'
+    """
+    # moved to np_config Feb 2023
     return np_config.normalize_time(t)

{np_services-0.1.59.dist-info → np_services-0.1.73.dist-info}/METADATA

@@ -1,12 +1,13 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.4
 Name: np-services
-Version: 0.1.59
+Version: 0.1.73
 Summary: Tools for interfacing with devices and services used in Mindscope Neuropixels experiments at the Allen Institute.
-Author-Email: bjhardcastle <ben.hardcastle@alleninstitute.org>
+Author-email: bjhardcastle <ben.hardcastle@alleninstitute.org>
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
 Classifier: Operating System :: OS Independent
 Requires-Python: <4.0,>=3.11
+Description-Content-Type: text/markdown
 Requires-Dist: requests<3,>=2
 Requires-Dist: np-session>=0.6.40
 Requires-Dist: pyzmq
@@ -15,11 +16,9 @@ Requires-Dist: pandas>=2.0
 Requires-Dist: h5py<4.0.0,>=3.8.0
 Requires-Dist: np-config>=0.4.17
 Requires-Dist: tables<4.0.0,>=3.8.0
-Requires-Dist: npc-sync>=0.1.6
-Requires-Dist: npc-ephys>=0.1.7
-Requires-Dist: npc-stim>=0.1.4
+Requires-Dist: npc-sync>=0.1.13
+Requires-Dist: npc-stim>=0.1.5
 Requires-Dist: npc-mvr>=0.1.2
-Description-Content-Type: text/markdown
 
 # service usage
-![Services](./services.drawio.svg)
+![Services](./services.drawio.svg)

np_services-0.1.73.dist-info/RECORD

@@ -0,0 +1,15 @@
+np_services/__init__.py,sha256=LV0k1Xgx9KP4r0EpSbTEhofHT53UO7E-GFG7Wgl7st0,291
+np_services/open_ephys.py,sha256=EOZIa3T-AzyWagYLbO2nxlakbrpookRBwSc_K_bCstI,10627
+np_services/protocols.py,sha256=bky_SreNzsDITb8RG6NiwMV1oqa7wJiuyDUvKn-Z4hg,5366
+np_services/proxies.py,sha256=4hx1blCb5cN8kidOT9byEUpivOysvM36F_rCCuoKSRw,54422
+np_services/stim_computer_theme_changer.py,sha256=y_v-m0h35m5n1kGWF_p_pRi6hKz_tHsrOKhzpWt8msw,1993
+np_services/utils.py,sha256=w7uZX6IHcLO65aKPCHqRn_2Wr1qMjgKeaqhvaHxMFjE,5603
+np_services/resources/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+np_services/resources/mvr_connector.py,sha256=2kRSKiWdF1CgALvsK3EAy8Xia659yJ8taCLzbaTpe14,7970
+np_services/resources/zro.py,sha256=-1a6knlpLnNb-muJsebeW4hZmDnUXj6ThdbHm8641JA,9921
+np_services/scripts/pretest.py,sha256=MjyyC9dPnbdhoVu6FLnRbam5peYWA2dorXpDOCHQPp0,15612
+np_services-0.1.73.dist-info/METADATA,sha256=AsAjzXTYU5TWgXV3A-rY80pbxL4FQAVFwzYy-X4x9PQ,849
+np_services-0.1.73.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
+np_services-0.1.73.dist-info/entry_points.txt,sha256=I4h7Ci2KAFSwWRSd6-ZBTpyTbEQMCBe86zwhnROd6Oc,84
+np_services-0.1.73.dist-info/top_level.txt,sha256=JT1ozakOjqY1JyPkaLl69-9du_eSxA2KsfUKjuzQ9zc,12
+np_services-0.1.73.dist-info/RECORD,,

{np_services-0.1.59.dist-info → np_services-0.1.73.dist-info}/WHEEL

@@ -1,4 +1,5 @@
 Wheel-Version: 1.0
-Generator: pdm-backend (2.1.8)
+Generator: setuptools (80.10.2)
 Root-Is-Purelib: true
 Tag: py3-none-any
+

{np_services-0.1.59.dist-info → np_services-0.1.73.dist-info}/entry_points.txt

@@ -1,3 +1,3 @@
 [console_scripts]
 pretest = np_services.scripts.pretest:main
-
+task = poethepoet:main

np_services-0.1.73.dist-info/top_level.txt

@@ -0,0 +1 @@
+np_services

np_services/.mypy_cache/.gitignore

@@ -1,2 +0,0 @@
-# Automatically created by mypy
-*

np_services/.mypy_cache/3.9/@plugins_snapshot.json

@@ -1 +0,0 @@
-{}

np_services/.mypy_cache/3.9/__future__.data.json

@@ -1 +0,0 @@
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