nomad-parser-plugins-workflow 1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- nomad_parser_plugins_workflow-1.0.dist-info/LICENSE +202 -0
- nomad_parser_plugins_workflow-1.0.dist-info/METADATA +319 -0
- nomad_parser_plugins_workflow-1.0.dist-info/RECORD +58 -0
- nomad_parser_plugins_workflow-1.0.dist-info/WHEEL +5 -0
- nomad_parser_plugins_workflow-1.0.dist-info/entry_points.txt +11 -0
- nomad_parser_plugins_workflow-1.0.dist-info/top_level.txt +1 -0
- workflowparsers/__init__.py +314 -0
- workflowparsers/aflow/__init__.py +19 -0
- workflowparsers/aflow/__main__.py +31 -0
- workflowparsers/aflow/metainfo/__init__.py +19 -0
- workflowparsers/aflow/metainfo/aflow.py +1240 -0
- workflowparsers/aflow/parser.py +741 -0
- workflowparsers/asr/__init__.py +19 -0
- workflowparsers/asr/__main__.py +31 -0
- workflowparsers/asr/metainfo/__init__.py +19 -0
- workflowparsers/asr/metainfo/asr.py +306 -0
- workflowparsers/asr/parser.py +266 -0
- workflowparsers/atomate/__init__.py +19 -0
- workflowparsers/atomate/__main__.py +31 -0
- workflowparsers/atomate/metainfo/__init__.py +19 -0
- workflowparsers/atomate/metainfo/atomate.py +395 -0
- workflowparsers/atomate/parser.py +357 -0
- workflowparsers/elastic/__init__.py +19 -0
- workflowparsers/elastic/__main__.py +31 -0
- workflowparsers/elastic/metainfo/__init__.py +19 -0
- workflowparsers/elastic/metainfo/elastic.py +364 -0
- workflowparsers/elastic/parser.py +798 -0
- workflowparsers/fhivibes/__init__.py +19 -0
- workflowparsers/fhivibes/__main__.py +31 -0
- workflowparsers/fhivibes/metainfo/__init__.py +19 -0
- workflowparsers/fhivibes/metainfo/fhi_vibes.py +898 -0
- workflowparsers/fhivibes/parser.py +566 -0
- workflowparsers/lobster/__init__.py +19 -0
- workflowparsers/lobster/__main__.py +31 -0
- workflowparsers/lobster/metainfo/__init__.py +19 -0
- workflowparsers/lobster/metainfo/lobster.py +446 -0
- workflowparsers/lobster/parser.py +618 -0
- workflowparsers/phonopy/__init__.py +19 -0
- workflowparsers/phonopy/__main__.py +31 -0
- workflowparsers/phonopy/calculator.py +260 -0
- workflowparsers/phonopy/metainfo/__init__.py +19 -0
- workflowparsers/phonopy/metainfo/phonopy.py +83 -0
- workflowparsers/phonopy/parser.py +583 -0
- workflowparsers/quantum_espresso_epw/__init__.py +19 -0
- workflowparsers/quantum_espresso_epw/__main__.py +31 -0
- workflowparsers/quantum_espresso_epw/metainfo/__init__.py +19 -0
- workflowparsers/quantum_espresso_epw/metainfo/quantum_espresso_epw.py +579 -0
- workflowparsers/quantum_espresso_epw/parser.py +583 -0
- workflowparsers/quantum_espresso_phonon/__init__.py +19 -0
- workflowparsers/quantum_espresso_phonon/__main__.py +31 -0
- workflowparsers/quantum_espresso_phonon/metainfo/__init__.py +19 -0
- workflowparsers/quantum_espresso_phonon/metainfo/quantum_espresso_phonon.py +389 -0
- workflowparsers/quantum_espresso_phonon/parser.py +483 -0
- workflowparsers/quantum_espresso_xspectra/__init__.py +19 -0
- workflowparsers/quantum_espresso_xspectra/__main__.py +31 -0
- workflowparsers/quantum_espresso_xspectra/metainfo/__init__.py +19 -0
- workflowparsers/quantum_espresso_xspectra/metainfo/quantum_espresso_xspectra.py +290 -0
- workflowparsers/quantum_espresso_xspectra/parser.py +586 -0
|
@@ -0,0 +1,290 @@
|
|
|
1
|
+
#
|
|
2
|
+
# Copyright The NOMAD Authors.
|
|
3
|
+
#
|
|
4
|
+
# This file is part of NOMAD.
|
|
5
|
+
# See https://nomad-lab.eu for further info.
|
|
6
|
+
#
|
|
7
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
8
|
+
# you may not use this file except in compliance with the License.
|
|
9
|
+
# You may obtain a copy of the License at
|
|
10
|
+
#
|
|
11
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
|
12
|
+
#
|
|
13
|
+
# Unless required by applicable law or agreed to in writing, software
|
|
14
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
15
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
16
|
+
# See the License for the specific language governing permissions and
|
|
17
|
+
# limitations under the License.
|
|
18
|
+
#
|
|
19
|
+
import numpy as np # pylint: disable=unused-import
|
|
20
|
+
|
|
21
|
+
from nomad.metainfo import ( # pylint: disable=unused-import
|
|
22
|
+
MSection,
|
|
23
|
+
Package,
|
|
24
|
+
Quantity,
|
|
25
|
+
Section,
|
|
26
|
+
SubSection,
|
|
27
|
+
JSON,
|
|
28
|
+
)
|
|
29
|
+
import runschema.run # pylint: disable=unused-import
|
|
30
|
+
import runschema.calculation # pylint: disable=unused-import
|
|
31
|
+
import runschema.method # pylint: disable=unused-import
|
|
32
|
+
import runschema.system # pylint: disable=unused-import
|
|
33
|
+
|
|
34
|
+
|
|
35
|
+
m_package = Package()
|
|
36
|
+
|
|
37
|
+
|
|
38
|
+
class x_qe_xspectra_input(MSection):
|
|
39
|
+
m_def = Section(validate=False)
|
|
40
|
+
|
|
41
|
+
x_qe_xspectra_calculation = Quantity(
|
|
42
|
+
type=str,
|
|
43
|
+
description="""
|
|
44
|
+
""",
|
|
45
|
+
)
|
|
46
|
+
|
|
47
|
+
x_qe_xspectra_xepsilon = Quantity(
|
|
48
|
+
type=np.float64,
|
|
49
|
+
shape=[3],
|
|
50
|
+
description="""
|
|
51
|
+
""",
|
|
52
|
+
)
|
|
53
|
+
|
|
54
|
+
x_qe_xspectra_xonly_plot = Quantity(
|
|
55
|
+
type=bool,
|
|
56
|
+
description="""
|
|
57
|
+
""",
|
|
58
|
+
)
|
|
59
|
+
|
|
60
|
+
x_qe_xspectra_filecore = Quantity(
|
|
61
|
+
type=str,
|
|
62
|
+
description="""
|
|
63
|
+
""",
|
|
64
|
+
)
|
|
65
|
+
|
|
66
|
+
x_qe_xspectra_main_plot_parameters = Quantity(
|
|
67
|
+
type=JSON,
|
|
68
|
+
description="""
|
|
69
|
+
""",
|
|
70
|
+
)
|
|
71
|
+
|
|
72
|
+
|
|
73
|
+
class x_qe_xspectra_pwscf_wavefunction(MSection):
|
|
74
|
+
m_def = Section(validate=False)
|
|
75
|
+
|
|
76
|
+
x_qe_xspectra_file = Quantity(
|
|
77
|
+
type=str,
|
|
78
|
+
description="""
|
|
79
|
+
""",
|
|
80
|
+
)
|
|
81
|
+
|
|
82
|
+
x_qe_xspectra_wavefunctions = Quantity(
|
|
83
|
+
type=str,
|
|
84
|
+
description="""
|
|
85
|
+
""",
|
|
86
|
+
)
|
|
87
|
+
|
|
88
|
+
|
|
89
|
+
class x_qe_xspectra_n_parallel(MSection):
|
|
90
|
+
m_def = Section(validate=False)
|
|
91
|
+
|
|
92
|
+
x_qe_xspectra_n_parallel_min = Quantity(
|
|
93
|
+
type=np.float64,
|
|
94
|
+
shape=[3],
|
|
95
|
+
description="""
|
|
96
|
+
""",
|
|
97
|
+
)
|
|
98
|
+
|
|
99
|
+
x_qe_xspectra_n_parallel_max = Quantity(
|
|
100
|
+
type=np.float64,
|
|
101
|
+
shape=[3],
|
|
102
|
+
description="""
|
|
103
|
+
""",
|
|
104
|
+
)
|
|
105
|
+
|
|
106
|
+
x_qe_xspectra_n_parallel_sum = Quantity(
|
|
107
|
+
type=np.float64,
|
|
108
|
+
shape=[3],
|
|
109
|
+
description="""
|
|
110
|
+
""",
|
|
111
|
+
)
|
|
112
|
+
|
|
113
|
+
|
|
114
|
+
class Run(runschema.run.Run):
|
|
115
|
+
m_def = Section(validate=False, extends_base_section=True)
|
|
116
|
+
|
|
117
|
+
x_qe_xspectra_input = SubSection(sub_section=x_qe_xspectra_input.m_def)
|
|
118
|
+
|
|
119
|
+
|
|
120
|
+
class Method(runschema.method.Method):
|
|
121
|
+
m_def = Section(validate=False, extends_base_section=True)
|
|
122
|
+
|
|
123
|
+
x_qe_xspectra_save_directory = Quantity(
|
|
124
|
+
type=str,
|
|
125
|
+
description="""
|
|
126
|
+
""",
|
|
127
|
+
)
|
|
128
|
+
x_qe_xspectra_pwscf_wavefunction = SubSection(
|
|
129
|
+
sub_section=x_qe_xspectra_pwscf_wavefunction, repeats=True
|
|
130
|
+
)
|
|
131
|
+
|
|
132
|
+
x_qe_xspectra_n_parallel_sticks = SubSection(
|
|
133
|
+
sub_section=x_qe_xspectra_n_parallel.m_def
|
|
134
|
+
)
|
|
135
|
+
|
|
136
|
+
x_qe_xspectra_n_parallel_g_vectors = SubSection(
|
|
137
|
+
sub_section=x_qe_xspectra_n_parallel.m_def
|
|
138
|
+
)
|
|
139
|
+
|
|
140
|
+
|
|
141
|
+
class System(runschema.system.System):
|
|
142
|
+
m_def = Section(validate=False, extends_base_section=True)
|
|
143
|
+
|
|
144
|
+
x_qe_xspectra_bravais_lattice_index = Quantity(
|
|
145
|
+
type=np.int32,
|
|
146
|
+
shape=[],
|
|
147
|
+
description="""
|
|
148
|
+
""",
|
|
149
|
+
)
|
|
150
|
+
|
|
151
|
+
x_qe_xspectra_lattice_parameter = Quantity(
|
|
152
|
+
type=np.float64,
|
|
153
|
+
shape=[],
|
|
154
|
+
unit='m',
|
|
155
|
+
description="""
|
|
156
|
+
""",
|
|
157
|
+
)
|
|
158
|
+
|
|
159
|
+
x_qe_xspectra_unit_cell_volume = Quantity(
|
|
160
|
+
type=np.float64,
|
|
161
|
+
shape=[],
|
|
162
|
+
unit='m ** 3',
|
|
163
|
+
description="""
|
|
164
|
+
""",
|
|
165
|
+
)
|
|
166
|
+
|
|
167
|
+
x_qe_xspectra_n_atoms_cell = Quantity(
|
|
168
|
+
type=np.int32,
|
|
169
|
+
shape=[],
|
|
170
|
+
description="""
|
|
171
|
+
""",
|
|
172
|
+
)
|
|
173
|
+
|
|
174
|
+
x_qe_xspectra_n_atomic_sites = Quantity(
|
|
175
|
+
type=np.int32,
|
|
176
|
+
shape=[],
|
|
177
|
+
description="""
|
|
178
|
+
""",
|
|
179
|
+
)
|
|
180
|
+
|
|
181
|
+
x_qe_xspectra_point_group = Quantity(
|
|
182
|
+
type=str,
|
|
183
|
+
shape=[],
|
|
184
|
+
description="""
|
|
185
|
+
""",
|
|
186
|
+
)
|
|
187
|
+
|
|
188
|
+
|
|
189
|
+
class AtomParameters(runschema.method.AtomParameters):
|
|
190
|
+
m_def = Section(validate=False, extends_base_section=True)
|
|
191
|
+
|
|
192
|
+
x_qe_xspectra_file = Quantity(
|
|
193
|
+
type=str,
|
|
194
|
+
shape=[],
|
|
195
|
+
description="""
|
|
196
|
+
""",
|
|
197
|
+
)
|
|
198
|
+
|
|
199
|
+
x_qe_xspectra_md5_check_sum = Quantity(
|
|
200
|
+
type=str,
|
|
201
|
+
shape=[],
|
|
202
|
+
description="""
|
|
203
|
+
""",
|
|
204
|
+
)
|
|
205
|
+
|
|
206
|
+
x_qe_xspectra_type = Quantity(
|
|
207
|
+
type=str,
|
|
208
|
+
shape=[],
|
|
209
|
+
description="""
|
|
210
|
+
""",
|
|
211
|
+
)
|
|
212
|
+
|
|
213
|
+
x_qe_xspectra_n_radial_grid_points = Quantity(
|
|
214
|
+
type=np.int32,
|
|
215
|
+
shape=[],
|
|
216
|
+
description="""
|
|
217
|
+
""",
|
|
218
|
+
)
|
|
219
|
+
|
|
220
|
+
x_qe_xspectra_n_beta_functions = Quantity(
|
|
221
|
+
type=np.int32,
|
|
222
|
+
shape=[],
|
|
223
|
+
description="""
|
|
224
|
+
""",
|
|
225
|
+
)
|
|
226
|
+
|
|
227
|
+
x_qe_xspectra_l = Quantity(
|
|
228
|
+
type=np.int32,
|
|
229
|
+
shape=['x_qe_xspectra_n_beta_functions'],
|
|
230
|
+
description="""
|
|
231
|
+
""",
|
|
232
|
+
)
|
|
233
|
+
|
|
234
|
+
x_qe_xspectra_n_q_coefficients = Quantity(
|
|
235
|
+
type=np.int32,
|
|
236
|
+
shape=[],
|
|
237
|
+
description="""
|
|
238
|
+
""",
|
|
239
|
+
)
|
|
240
|
+
|
|
241
|
+
x_qe_xspectra_l = Quantity(
|
|
242
|
+
type=np.float64,
|
|
243
|
+
shape=['x_qe_xspectra_n_q_coefficients'],
|
|
244
|
+
description="""
|
|
245
|
+
""",
|
|
246
|
+
)
|
|
247
|
+
|
|
248
|
+
|
|
249
|
+
class Spectra(runschema.calculation.Spectra):
|
|
250
|
+
m_def = Section(validate=False, extends_base_section=True)
|
|
251
|
+
|
|
252
|
+
x_qe_xspectra_energy_zero = Quantity(
|
|
253
|
+
type=np.float64,
|
|
254
|
+
unit='eV',
|
|
255
|
+
description="""
|
|
256
|
+
""",
|
|
257
|
+
)
|
|
258
|
+
|
|
259
|
+
x_qe_xspectra_xemin = Quantity(
|
|
260
|
+
type=np.float64,
|
|
261
|
+
unit='eV',
|
|
262
|
+
description="""
|
|
263
|
+
""",
|
|
264
|
+
)
|
|
265
|
+
|
|
266
|
+
x_qe_xspectra_xemax = Quantity(
|
|
267
|
+
type=np.float64,
|
|
268
|
+
unit='eV',
|
|
269
|
+
description="""
|
|
270
|
+
""",
|
|
271
|
+
)
|
|
272
|
+
|
|
273
|
+
x_qe_xspectra_xnepoint = Quantity(
|
|
274
|
+
type=np.float64,
|
|
275
|
+
description="""
|
|
276
|
+
""",
|
|
277
|
+
)
|
|
278
|
+
|
|
279
|
+
x_qe_xspectra_broadening_parameter = Quantity(
|
|
280
|
+
type=np.float64,
|
|
281
|
+
description="""
|
|
282
|
+
""",
|
|
283
|
+
)
|
|
284
|
+
|
|
285
|
+
x_qe_xspectra_energy_core_level = Quantity(
|
|
286
|
+
type=np.float64,
|
|
287
|
+
unit='eV',
|
|
288
|
+
description="""
|
|
289
|
+
""",
|
|
290
|
+
)
|