nmdc-schema 11.14.0__py3-none-any.whl → 11.15.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. nmdc_schema/nmdc.py +745 -970
  2. nmdc_schema/nmdc.schema.json +598 -913
  3. nmdc_schema/nmdc_materialized_patterns.json +5527 -8459
  4. nmdc_schema/nmdc_materialized_patterns.schema.json +966 -1070
  5. nmdc_schema/nmdc_materialized_patterns.yaml +4532 -6312
  6. nmdc_schema/{nmdc-pydantic.py → nmdc_pydantic.py} +5402 -3434
  7. {nmdc_schema-11.14.0.dist-info → nmdc_schema-11.15.0.dist-info}/METADATA +1 -1
  8. {nmdc_schema-11.14.0.dist-info → nmdc_schema-11.15.0.dist-info}/RECORD +11 -11
  9. {nmdc_schema-11.14.0.dist-info → nmdc_schema-11.15.0.dist-info}/WHEEL +0 -0
  10. {nmdc_schema-11.14.0.dist-info → nmdc_schema-11.15.0.dist-info}/entry_points.txt +0 -0
  11. {nmdc_schema-11.14.0.dist-info → nmdc_schema-11.15.0.dist-info}/licenses/LICENSE +0 -0
nmdc_schema/nmdc_materialized_patterns.schema.json CHANGED
@@ -1,5 +1,14 @@
1
1
  {
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  "$defs": {
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+ "AeroStrucEnum": {
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+ "description": "",
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+ "enum": [
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+ "glider",
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+ "plane"
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+ ],
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+ "title": "AeroStrucEnum",
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+ "type": "string"
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+ },
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  "AnalysisTypeEnum": {
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  "description": "",
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  "enum": [
@@ -20,8 +29,8 @@
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  "description": "",
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  "enum": [
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  "building",
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- "shed",
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- "home"
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+ "home",
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+ "shed"
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  ],
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  "title": "ArchStrucEnum",
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  "type": "string"
@@ -39,14 +48,14 @@
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  "BiolStatEnum": {
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  "description": "",
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  "enum": [
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- "wild",
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- "natural",
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- "semi-natural",
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- "inbred line",
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  "breeder's line",
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- "hybrid",
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  "clonal selection",
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- "mutant"
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+ "hybrid",
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+ "inbred line",
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+ "mutant",
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+ "natural",
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+ "semi-natural",
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+ "wild"
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  ],
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  "title": "BiolStatEnum",
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  "type": "string"
@@ -64,7 +73,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Actual mass of water vapor - mh20 - present in the air water vapor mixture"
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+ "description": "Actual mass of water vapor present in the air water vapor mixture.",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "add_date": {
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  "description": "The date on which the information was added to the database.",
@@ -74,15 +84,12 @@
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  ]
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  },
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  "add_recov_method": {
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- "anyOf": [
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- {
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- "$ref": "#/$defs/TextValue"
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- },
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- {
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- "type": "null"
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- }
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- ],
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- "description": "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field"
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+ "description": "Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field",
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+ "pattern": "^(Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer Addition|Surfactant Addition|Not Applicable|other);(\\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\\d|3[01])(T([01]\\d|2[0-3]):([0-5]\\d):([0-5]\\d)(\\.\\d+)?(Z|([+-][01]\\d:[0-5]\\d))?)?)?)?$$",
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+ "type": [
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+ "string",
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+ "null"
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+ ]
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  },
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  "additional_info": {
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  "anyOf": [
@@ -96,15 +103,12 @@
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  "description": "Information that doesn't fit anywhere else. Can also be used to propose new entries for fields with controlled vocabulary"
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  },
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  "address": {
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- "anyOf": [
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- {
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- "$ref": "#/$defs/TextValue"
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- },
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- {
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- "type": "null"
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- }
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- ],
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- "description": "The street name and building number where the sampling occurred."
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+ "description": "The street name and building number where the sampling occurred",
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+ "pattern": "^[1-9][0-9]* .*$",
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+ "type": [
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+ "string",
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+ "null"
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+ ]
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  },
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  "adj_room": {
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  "anyOf": [
@@ -115,23 +119,18 @@
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  "type": "null"
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  }
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  ],
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- "description": "List of rooms (room number, room name) immediately adjacent to the sampling room"
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+ "description": "List of rooms (room number, room name) immediately adjacent to the sampling room",
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+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);[1-9][0-9]*$"
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  },
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  "aero_struc": {
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- "anyOf": [
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- {
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- "$ref": "#/$defs/TextValue"
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- },
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- {
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- "type": "null"
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- }
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- ],
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+ "$ref": "#/$defs/AeroStrucEnum",
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  "description": "Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together"
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  },
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  "agrochem_addition": {
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  "description": "Addition of fertilizers, pesticides, etc. - amount and time of applications",
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  "items": {
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- "$ref": "#/$defs/TextValue"
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+ "$ref": "#/$defs/TextValue",
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+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);(\\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\\d|3[01])(T([01]\\d|2[0-3]):([0-5]\\d):([0-5]\\d)(\\.\\d+)?(Z|([+-][01]\\d:[0-5]\\d))?)?)?)?$$"
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  },
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  "type": [
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  "array",
@@ -141,7 +140,8 @@
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  "air_PM_concen": {
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  "description": "Concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM",
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  "items": {
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- "$ref": "#/$defs/TextValue"
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+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$",
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+ "type": "string"
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  },
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  "type": [
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  "array",
@@ -157,7 +157,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Temperature of the air at the time of sampling"
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+ "description": "Temperature of the air at the time of sampling",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "air_temp_regm": {
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  "description": "Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens",
@@ -178,18 +179,16 @@
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  "type": "null"
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  }
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  ],
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- "description": "The relative abundance of aluminum in the sample"
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+ "description": "The relative abundance of aluminum in the sample",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "al_sat_meth": {
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- "anyOf": [
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- {
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- "$ref": "#/$defs/TextValue"
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- },
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- {
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- "type": "null"
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- }
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- ],
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- "description": "Reference or method used in determining Aluminum saturation"
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+ "description": "Reference or method used in determining Aluminum saturation",
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+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
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+ "type": [
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+ "string",
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+ "null"
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+ ]
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  },
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  "alkalinity": {
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  "anyOf": [
@@ -200,18 +199,15 @@
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  "type": "null"
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  }
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  ],
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- "description": "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate"
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+ "description": "Alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "alkalinity_method": {
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- "anyOf": [
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- {
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- "$ref": "#/$defs/TextValue"
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- },
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- {
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- "type": "null"
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- }
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- ],
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- "description": "Method used for alkalinity measurement"
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+ "description": "Method used for alkalinity measurement",
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+ "type": [
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+ "string",
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+ "null"
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+ ]
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  },
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  "alkyl_diethers": {
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  "anyOf": [
@@ -222,7 +218,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Concentration of alkyl diethers"
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+ "description": "Concentration of alkyl diethers",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "alt": {
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  "anyOf": [
@@ -233,7 +230,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air"
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+ "description": "Heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air",
234
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
238
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  "alternative_identifiers": {
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  "description": "Unique identifier for a biosample submitted to additional resources. Matches the entity that has been submitted to NMDC",
@@ -265,7 +263,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Measurement of aminopeptidase activity"
266
+ "description": "Measurement of aminopeptidase activity",
267
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "ammonium": {
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  "anyOf": [
@@ -276,7 +275,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "Concentration of ammonium in the sample"
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+ "description": "Concentration of ammonium in the sample",
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+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
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  "ammonium_nitrogen": {
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  "anyOf": [
@@ -298,7 +298,8 @@
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  "type": "null"
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  }
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  ],
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- "description": "The unit of illuminance and luminous emittance, measuring luminous flux per unit area"
301
+ "description": "The unit of illuminance and luminous emittance, measuring luminous flux per unit area",
302
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
302
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  },
303
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  "analysis_type": {
304
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  "description": "Select all the data types associated or available for this biosample",
@@ -330,7 +331,8 @@
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  "type": "null"
331
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  }
332
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  ],
333
- "description": "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps."
334
+ "description": "The average of all annual precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps",
335
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
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  },
335
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  "annual_temp": {
336
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  "anyOf": [
@@ -341,7 +343,8 @@
341
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  "type": "null"
342
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  }
343
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  ],
344
- "description": "Mean annual temperature"
346
+ "description": "Mean annual temperature",
347
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
345
348
  },
346
349
  "antibiotic_regm": {
347
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  "description": "Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens",
@@ -362,7 +365,8 @@
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  "type": "null"
363
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  }
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  ],
365
- "description": "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1\u00ac\u221e API)"
368
+ "description": "API gravity is a measure of how heavy or light a petroleum liquid is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g. 31.1 API)",
369
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
366
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  },
367
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  "arch_struc": {
368
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  "$ref": "#/$defs/ArchStrucEnum",
@@ -377,7 +381,8 @@
377
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  "type": "null"
378
382
  }
379
383
  ],
380
- "description": "Saturate, Aromatic, Resin and Asphaltene\u00ac\u2020(SARA) is an analysis method that divides\u00ac\u2020crude oil\u00ac\u2020components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)"
384
+ "description": "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)",
385
+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
381
386
  },
382
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  "asphaltenes_pc": {
383
388
  "anyOf": [
@@ -388,7 +393,8 @@
388
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  "type": "null"
389
394
  }
390
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  ],
391
- "description": "Saturate, Aromatic, Resin and Asphaltene\u00ac\u2020(SARA) is an analysis method that divides\u00ac\u2020crude oil\u00ac\u2020components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)"
396
+ "description": "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)",
397
+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
392
398
  },
393
399
  "associated_studies": {
394
400
  "description": "The study associated with a resource.",
@@ -417,7 +423,8 @@
417
423
  "type": "null"
418
424
  }
419
425
  ],
420
- "description": "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day"
426
+ "description": "The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day",
427
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
421
428
  },
422
429
  "avg_occup": {
423
430
  "anyOf": [
@@ -428,7 +435,7 @@
428
435
  "type": "null"
429
436
  }
430
437
  ],
431
- "description": "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room."
438
+ "description": "Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room"
432
439
  },
433
440
  "avg_temp": {
434
441
  "anyOf": [
@@ -439,7 +446,8 @@
439
446
  "type": "null"
440
447
  }
441
448
  ],
442
- "description": "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day"
449
+ "description": "The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day",
450
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
443
451
  },
444
452
  "bac_prod": {
445
453
  "anyOf": [
@@ -450,7 +458,8 @@
450
458
  "type": "null"
451
459
  }
452
460
  ],
453
- "description": "Bacterial production in the water column measured by isotope uptake"
461
+ "description": "Bacterial production in the water column measured by isotope uptake",
462
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
454
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  },
455
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  "bac_resp": {
456
465
  "anyOf": [
@@ -461,7 +470,8 @@
461
470
  "type": "null"
462
471
  }
463
472
  ],
464
- "description": "Measurement of bacterial respiration in the water column"
473
+ "description": "Measurement of bacterial respiration in the water column",
474
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
465
475
  },
466
476
  "bacteria_carb_prod": {
467
477
  "anyOf": [
@@ -472,7 +482,8 @@
472
482
  "type": "null"
473
483
  }
474
484
  ],
475
- "description": "Measurement of bacterial carbon production"
485
+ "description": "Measurement of bacterial carbon production",
486
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
476
487
  },
477
488
  "barometric_press": {
478
489
  "anyOf": [
@@ -483,7 +494,8 @@
483
494
  "type": "null"
484
495
  }
485
496
  ],
486
- "description": "Force per unit area exerted against a surface by the weight of air above that surface"
497
+ "description": "Force per unit area exerted against a surface by the weight of air above that surface",
498
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
487
499
  },
488
500
  "basin": {
489
501
  "anyOf": [
@@ -527,7 +539,8 @@
527
539
  "type": "null"
528
540
  }
529
541
  ],
530
- "description": "Concentration of benzene in the sample"
542
+ "description": "Concentration of benzene in the sample",
543
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
531
544
  },
532
545
  "biochem_oxygen_dem": {
533
546
  "anyOf": [
@@ -538,33 +551,26 @@
538
551
  "type": "null"
539
552
  }
540
553
  ],
541
- "description": "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period"
554
+ "description": "Amount of dissolved oxygen needed by aerobic biological organisms in a body of water to break down organic material present in a given water sample at certain temperature over a specific time period",
555
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
542
556
  },
543
557
  "biocide": {
544
- "anyOf": [
545
- {
546
- "$ref": "#/$defs/TextValue"
547
- },
548
- {
549
- "type": "null"
550
- }
551
- ],
552
- "description": "List of biocides (commercial name of product and supplier) and date of administration"
558
+ "description": "List of biocides (commercial name of product and supplier) and date of administration",
559
+ "type": [
560
+ "string",
561
+ "null"
562
+ ]
553
563
  },
554
564
  "biocide_admin_method": {
555
- "anyOf": [
556
- {
557
- "$ref": "#/$defs/TextValue"
558
- },
559
- {
560
- "type": "null"
561
- }
562
- ],
563
- "description": "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)"
565
+ "description": "Method of biocide administration (dose, frequency, duration, time elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3 days)",
566
+ "type": [
567
+ "string",
568
+ "null"
569
+ ]
564
570
  },
565
571
  "biol_stat": {
566
572
  "$ref": "#/$defs/BiolStatEnum",
567
- "description": "The level of genome modification."
573
+ "description": "The level of genome modification"
568
574
  },
569
575
  "biomass": {
570
576
  "description": "Amount of biomass; should include the name for the part of biomass measured, e.g. Microbial, total. Can include multiple measurements",
@@ -594,7 +600,7 @@
594
600
  "type": "null"
595
601
  }
596
602
  ],
597
- "description": "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi."
603
+ "description": "Information about treatment(s) involving use of biotic factors, such as bacteria, viruses or fungi"
598
604
  },
599
605
  "biotic_relationship": {
600
606
  "$ref": "#/$defs/BioticRelationshipEnum",
@@ -609,7 +615,8 @@
609
615
  "type": "null"
610
616
  }
611
617
  ],
612
- "description": "Concentration of bishomohopanol"
618
+ "description": "Concentration of bishomohopanol",
619
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
613
620
  },
614
621
  "blood_press_diast": {
615
622
  "anyOf": [
@@ -620,7 +627,8 @@
620
627
  "type": "null"
621
628
  }
622
629
  ],
623
- "description": "Resting diastolic blood pressure, measured as mm mercury"
630
+ "description": "Resting diastolic blood pressure, measured as mm mercury",
631
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
624
632
  },
625
633
  "blood_press_syst": {
626
634
  "anyOf": [
@@ -631,7 +639,8 @@
631
639
  "type": "null"
632
640
  }
633
641
  ],
634
- "description": "Resting systolic blood pressure, measured as mm mercury"
642
+ "description": "Resting systolic blood pressure, measured as mm mercury",
643
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
635
644
  },
636
645
  "bromide": {
637
646
  "anyOf": [
@@ -642,7 +651,8 @@
642
651
  "type": "null"
643
652
  }
644
653
  ],
645
- "description": "Concentration of bromide"
654
+ "description": "Concentration of bromide",
655
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
646
656
  },
647
657
  "build_docs": {
648
658
  "$ref": "#/$defs/BuildDocsEnum",
@@ -671,17 +681,11 @@
671
681
  "type": "null"
672
682
  }
673
683
  ],
674
- "description": "The age of the built structure since construction"
684
+ "description": "The age of the built structure since construction",
685
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
675
686
  },
676
687
  "built_struc_set": {
677
- "anyOf": [
678
- {
679
- "$ref": "#/$defs/TextValue"
680
- },
681
- {
682
- "type": "null"
683
- }
684
- ],
688
+ "$ref": "#/$defs/BuiltStrucSetEnum",
685
689
  "description": "The characterization of the location of the built structure as high or low human density"
686
690
  },
687
691
  "built_struc_type": {
@@ -715,7 +719,8 @@
715
719
  "type": "null"
716
720
  }
717
721
  ],
718
- "description": "Concentration of calcium in the sample"
722
+ "description": "Concentration of calcium in the sample",
723
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
719
724
  },
720
725
  "carb_dioxide": {
721
726
  "anyOf": [
@@ -726,7 +731,8 @@
726
731
  "type": "null"
727
732
  }
728
733
  ],
729
- "description": "Carbon dioxide (gas) amount or concentration at the time of sampling"
734
+ "description": "Carbon dioxide (gas) amount or concentration at the time of sampling",
735
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
730
736
  },
731
737
  "carb_monoxide": {
732
738
  "anyOf": [
@@ -737,7 +743,8 @@
737
743
  "type": "null"
738
744
  }
739
745
  ],
740
- "description": "Carbon monoxide (gas) amount or concentration at the time of sampling"
746
+ "description": "Carbon monoxide (gas) amount or concentration at the time of sampling",
747
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
741
748
  },
742
749
  "carb_nitro_ratio": {
743
750
  "anyOf": [
@@ -759,10 +766,11 @@
759
766
  "type": "null"
760
767
  }
761
768
  ],
762
- "description": "The area of the ceiling space within the room"
769
+ "description": "The area of the ceiling space within the room",
770
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
763
771
  },
764
772
  "ceil_cond": {
765
- "$ref": "#/$defs/CeilCondEnum",
773
+ "$ref": "#/$defs/DamagedEnum",
766
774
  "description": "The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas"
767
775
  },
768
776
  "ceil_finish_mat": {
@@ -770,18 +778,11 @@
770
778
  "description": "The type of material used to finish a ceiling"
771
779
  },
772
780
  "ceil_struc": {
773
- "anyOf": [
774
- {
775
- "$ref": "#/$defs/TextValue"
776
- },
777
- {
778
- "type": "null"
779
- }
780
- ],
781
+ "$ref": "#/$defs/CeilStrucEnum",
781
782
  "description": "The construction format of the ceiling"
782
783
  },
783
784
  "ceil_texture": {
784
- "$ref": "#/$defs/CeilTextureEnum",
785
+ "$ref": "#/$defs/CeilingWallTextureEnum",
785
786
  "description": "The feel, appearance, or consistency of a ceiling surface"
786
787
  },
787
788
  "ceil_thermal_mass": {
@@ -793,21 +794,15 @@
793
794
  "type": "null"
794
795
  }
795
796
  ],
796
- "description": "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow"
797
+ "description": "The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow",
798
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
797
799
  },
798
800
  "ceil_type": {
799
801
  "$ref": "#/$defs/CeilTypeEnum",
800
802
  "description": "The type of ceiling according to the ceiling's appearance or construction"
801
803
  },
802
804
  "ceil_water_mold": {
803
- "anyOf": [
804
- {
805
- "$ref": "#/$defs/TextValue"
806
- },
807
- {
808
- "type": "null"
809
- }
810
- ],
805
+ "$ref": "#/$defs/MoldVisibilityEnum",
811
806
  "description": "Signs of the presence of mold or mildew on the ceiling"
812
807
  },
813
808
  "chem_administration": {
@@ -846,7 +841,8 @@
846
841
  "type": "null"
847
842
  }
848
843
  ],
849
- "description": "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite"
844
+ "description": "A measure of the capacity of water to consume oxygen during the decomposition of organic matter and the oxidation of inorganic chemicals such as ammonia and nitrite",
845
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
850
846
  },
851
847
  "chem_treat_method": {
852
848
  "description": "Method of chemical administration(dose, frequency, duration, time elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1 hr; 0 days)",
@@ -856,15 +852,11 @@
856
852
  ]
857
853
  },
858
854
  "chem_treatment": {
859
- "anyOf": [
860
- {
861
- "$ref": "#/$defs/TextValue"
862
- },
863
- {
864
- "type": "null"
865
- }
866
- ],
867
- "description": "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included"
855
+ "description": "List of chemical compounds administered upstream the sampling location where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors, demulsifiers, and other production chemicals etc.). The commercial name of the product and name of the supplier should be provided. The date of administration should also be included",
856
+ "type": [
857
+ "string",
858
+ "null"
859
+ ]
868
860
  },
869
861
  "chloride": {
870
862
  "anyOf": [
@@ -875,7 +867,8 @@
875
867
  "type": "null"
876
868
  }
877
869
  ],
878
- "description": "Concentration of chloride in the sample"
870
+ "description": "Concentration of chloride in the sample",
871
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
879
872
  },
880
873
  "chlorophyll": {
881
874
  "anyOf": [
@@ -886,7 +879,8 @@
886
879
  "type": "null"
887
880
  }
888
881
  ],
889
- "description": "Concentration of chlorophyll"
882
+ "description": "Concentration of chlorophyll",
883
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
890
884
  },
891
885
  "climate_environment": {
892
886
  "description": "Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates",
@@ -953,7 +947,8 @@
953
947
  "type": "null"
954
948
  }
955
949
  ],
956
- "description": "Electrical conductivity of water"
950
+ "description": "Electrical conductivity of water",
951
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
957
952
  },
958
953
  "cool_syst_id": {
959
954
  "anyOf": [
@@ -986,11 +981,15 @@
986
981
  "type": "null"
987
982
  }
988
983
  ],
989
- "description": "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors."
984
+ "description": "Name or reference for the hydroponic or in vitro culture rooting medium; can be the name of a commonly used medium or reference to a specific medium, e.g. Murashige and Skoog medium. If the medium has not been formally published, use the rooting medium descriptors",
985
+ "pattern": "^.*|^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$"
990
986
  },
991
987
  "cur_land_use": {
992
- "$ref": "#/$defs/CurLandUseEnum",
993
- "description": "Present state of sample site"
988
+ "description": "Present state of sample site",
989
+ "type": [
990
+ "string",
991
+ "null"
992
+ ]
994
993
  },
995
994
  "cur_vegetation": {
996
995
  "anyOf": [
@@ -1004,15 +1003,12 @@
1004
1003
  "description": "Vegetation classification from one or more standard classification systems, or agricultural crop"
1005
1004
  },
1006
1005
  "cur_vegetation_meth": {
1007
- "anyOf": [
1008
- {
1009
- "$ref": "#/$defs/TextValue"
1010
- },
1011
- {
1012
- "type": "null"
1013
- }
1014
- ],
1015
- "description": "Reference or method used in vegetation classification"
1006
+ "description": "Reference or method used in vegetation classification",
1007
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
1008
+ "type": [
1009
+ "string",
1010
+ "null"
1011
+ ]
1016
1012
  },
1017
1013
  "date_last_rain": {
1018
1014
  "anyOf": [
@@ -1034,7 +1030,8 @@
1034
1030
  "type": "null"
1035
1031
  }
1036
1032
  ],
1037
- "description": "Density of the sample, which is its mass per unit volume (aka volumetric mass density)"
1033
+ "description": "Density of the sample, which is its mass per unit volume (aka volumetric mass density)",
1034
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1038
1035
  },
1039
1036
  "depos_env": {
1040
1037
  "$ref": "#/$defs/DeposEnvEnum",
@@ -1049,7 +1046,8 @@
1049
1046
  "type": "null"
1050
1047
  }
1051
1048
  ],
1052
- "description": "The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples."
1049
+ "description": "The vertical distance below local surface. For sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples",
1050
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1053
1051
  },
1054
1052
  "description": {
1055
1053
  "description": "a human-readable description of a thing",
@@ -1067,7 +1065,8 @@
1067
1065
  "type": "null"
1068
1066
  }
1069
1067
  ],
1070
- "description": "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water."
1068
+ "description": "The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water",
1069
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1071
1070
  },
1072
1071
  "diether_lipids": {
1073
1072
  "description": "Concentration of diether lipids; can include multiple types of diether lipids",
@@ -1088,7 +1087,8 @@
1088
1087
  "type": "null"
1089
1088
  }
1090
1089
  ],
1091
- "description": "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample"
1090
+ "description": "Concentration of dissolved carbon dioxide in the sample or liquid portion of the sample",
1091
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1092
1092
  },
1093
1093
  "diss_hydrogen": {
1094
1094
  "anyOf": [
@@ -1099,7 +1099,8 @@
1099
1099
  "type": "null"
1100
1100
  }
1101
1101
  ],
1102
- "description": "Concentration of dissolved hydrogen"
1102
+ "description": "Concentration of dissolved hydrogen",
1103
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1103
1104
  },
1104
1105
  "diss_inorg_carb": {
1105
1106
  "anyOf": [
@@ -1110,7 +1111,8 @@
1110
1111
  "type": "null"
1111
1112
  }
1112
1113
  ],
1113
- "description": "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter"
1114
+ "description": "Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter",
1115
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1114
1116
  },
1115
1117
  "diss_inorg_nitro": {
1116
1118
  "anyOf": [
@@ -1121,7 +1123,8 @@
1121
1123
  "type": "null"
1122
1124
  }
1123
1125
  ],
1124
- "description": "Concentration of dissolved inorganic nitrogen"
1126
+ "description": "Concentration of dissolved inorganic nitrogen",
1127
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1125
1128
  },
1126
1129
  "diss_inorg_phosp": {
1127
1130
  "anyOf": [
@@ -1132,7 +1135,8 @@
1132
1135
  "type": "null"
1133
1136
  }
1134
1137
  ],
1135
- "description": "Concentration of dissolved inorganic phosphorus in the sample"
1138
+ "description": "Concentration of dissolved inorganic phosphorus in the sample",
1139
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1136
1140
  },
1137
1141
  "diss_iron": {
1138
1142
  "anyOf": [
@@ -1143,7 +1147,8 @@
1143
1147
  "type": "null"
1144
1148
  }
1145
1149
  ],
1146
- "description": "Concentration of dissolved iron in the sample"
1150
+ "description": "Concentration of dissolved iron in the sample",
1151
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1147
1152
  },
1148
1153
  "diss_org_carb": {
1149
1154
  "anyOf": [
@@ -1154,7 +1159,8 @@
1154
1159
  "type": "null"
1155
1160
  }
1156
1161
  ],
1157
- "description": "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid"
1162
+ "description": "Concentration of dissolved organic carbon in the sample, liquid portion of the sample, or aqueous phase of the fluid",
1163
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1158
1164
  },
1159
1165
  "diss_org_nitro": {
1160
1166
  "anyOf": [
@@ -1165,7 +1171,8 @@
1165
1171
  "type": "null"
1166
1172
  }
1167
1173
  ],
1168
- "description": "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2"
1174
+ "description": "Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2",
1175
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1169
1176
  },
1170
1177
  "diss_oxygen": {
1171
1178
  "anyOf": [
@@ -1176,7 +1183,8 @@
1176
1183
  "type": "null"
1177
1184
  }
1178
1185
  ],
1179
- "description": "Concentration of dissolved oxygen"
1186
+ "description": "Concentration of dissolved oxygen",
1187
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1180
1188
  },
1181
1189
  "diss_oxygen_fluid": {
1182
1190
  "anyOf": [
@@ -1187,7 +1195,8 @@
1187
1195
  "type": "null"
1188
1196
  }
1189
1197
  ],
1190
- "description": "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)."
1198
+ "description": "Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxygen-corrosion and microbial activity (e.g. Mic)",
1199
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1191
1200
  },
1192
1201
  "dna_collect_site": {
1193
1202
  "description": "Provide information on the site your DNA sample was collected from",
@@ -1215,15 +1224,15 @@
1215
1224
  "description": "The composite type of the door"
1216
1225
  },
1217
1226
  "door_cond": {
1218
- "$ref": "#/$defs/DoorCondEnum",
1219
- "description": "The phsical condition of the door"
1227
+ "$ref": "#/$defs/DamagedRupturedEnum",
1228
+ "description": "The physical condition of the door"
1220
1229
  },
1221
1230
  "door_direct": {
1222
1231
  "$ref": "#/$defs/DoorDirectEnum",
1223
1232
  "description": "The direction the door opens"
1224
1233
  },
1225
1234
  "door_loc": {
1226
- "$ref": "#/$defs/DoorLocEnum",
1235
+ "$ref": "#/$defs/CompassDirections8Enum",
1227
1236
  "description": "The relative location of the door in the room"
1228
1237
  },
1229
1238
  "door_mat": {
@@ -1243,7 +1252,8 @@
1243
1252
  "type": "null"
1244
1253
  }
1245
1254
  ],
1246
- "description": "The size of the door"
1255
+ "description": "The size of the door",
1256
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1247
1257
  },
1248
1258
  "door_type": {
1249
1259
  "$ref": "#/$defs/DoorTypeEnum",
@@ -1254,18 +1264,14 @@
1254
1264
  "description": "The type of metal door"
1255
1265
  },
1256
1266
  "door_type_wood": {
1257
- "$ref": "#/$defs/DoorTypeWoodEnum",
1258
- "description": "The type of wood door"
1267
+ "description": "The type of wood door",
1268
+ "type": [
1269
+ "string",
1270
+ "null"
1271
+ ]
1259
1272
  },
1260
1273
  "door_water_mold": {
1261
- "anyOf": [
1262
- {
1263
- "$ref": "#/$defs/TextValue"
1264
- },
1265
- {
1266
- "type": "null"
1267
- }
1268
- ],
1274
+ "$ref": "#/$defs/MoldVisibilityEnum",
1269
1275
  "description": "Signs of the presence of mold or mildew on a door"
1270
1276
  },
1271
1277
  "down_par": {
@@ -1277,7 +1283,8 @@
1277
1283
  "type": "null"
1278
1284
  }
1279
1285
  ],
1280
- "description": "Visible waveband radiance and irradiance measurements in the water column"
1286
+ "description": "Visible waveband radiance and irradiance measurements in the water column",
1287
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1281
1288
  },
1282
1289
  "drainage_class": {
1283
1290
  "$ref": "#/$defs/DrainageClassEnum",
@@ -1331,10 +1338,12 @@
1331
1338
  "type": "null"
1332
1339
  }
1333
1340
  ],
1334
- "description": "Percentage of volatile solids removed from the anaerobic digestor"
1341
+ "description": "Percentage of volatile solids removed from the anaerobic digestor",
1342
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1335
1343
  },
1336
1344
  "elev": {
1337
- "description": "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit.",
1345
+ "description": "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit",
1346
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$",
1338
1347
  "type": [
1339
1348
  "number",
1340
1349
  "null"
@@ -1381,15 +1390,18 @@
1381
1390
  },
1382
1391
  "env_broad_scale": {
1383
1392
  "$ref": "#/$defs/ControlledIdentifiedTermValue",
1384
- "description": "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO\u2019s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS"
1393
+ "description": "Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS",
1394
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+) \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\d+\\]$"
1385
1395
  },
1386
1396
  "env_local_scale": {
1387
1397
  "$ref": "#/$defs/ControlledIdentifiedTermValue",
1388
- "description": "Report the entity or entities which are in the sample or specimen\u2019s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS."
1398
+ "description": "Report the entity or entities which are in the sample or specimen s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS",
1399
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+) \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\d+\\]$"
1389
1400
  },
1390
1401
  "env_medium": {
1391
1402
  "$ref": "#/$defs/ControlledIdentifiedTermValue",
1392
- "description": "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)."
1403
+ "description": "Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top)",
1404
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+) \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\d+\\]$"
1393
1405
  },
1394
1406
  "env_package": {
1395
1407
  "anyOf": [
@@ -1422,7 +1434,8 @@
1422
1434
  "type": "null"
1423
1435
  }
1424
1436
  ],
1425
- "description": "Concentration of ethylbenzene in the sample"
1437
+ "description": "Concentration of ethylbenzene in the sample",
1438
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1426
1439
  },
1427
1440
  "exp_duct": {
1428
1441
  "anyOf": [
@@ -1433,7 +1446,8 @@
1433
1446
  "type": "null"
1434
1447
  }
1435
1448
  ],
1436
- "description": "The amount of exposed ductwork in the room"
1449
+ "description": "The amount of exposed ductwork in the room",
1450
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1437
1451
  },
1438
1452
  "exp_pipe": {
1439
1453
  "anyOf": [
@@ -1444,7 +1458,8 @@
1444
1458
  "type": "null"
1445
1459
  }
1446
1460
  ],
1447
- "description": "The number of exposed pipes in the room"
1461
+ "description": "The number of exposed pipes in the room",
1462
+ "pattern": "^[1-9][0-9]* .*$"
1448
1463
  },
1449
1464
  "experimental_factor": {
1450
1465
  "anyOf": [
@@ -1458,7 +1473,8 @@
1458
1473
  "type": "null"
1459
1474
  }
1460
1475
  ],
1461
- "description": "Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI"
1476
+ "description": "Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)",
1477
+ "pattern": "^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$"
1462
1478
  },
1463
1479
  "experimental_factor_other": {
1464
1480
  "description": "Other details about your sample that you feel can't be accurately represented in the available columns.",
@@ -1479,11 +1495,11 @@
1479
1495
  "description": "The number of exterior doors in the built structure"
1480
1496
  },
1481
1497
  "ext_wall_orient": {
1482
- "$ref": "#/$defs/ExtWallOrientEnum",
1498
+ "$ref": "#/$defs/CompassDirections8Enum",
1483
1499
  "description": "The orientation of the exterior wall"
1484
1500
  },
1485
1501
  "ext_window_orient": {
1486
- "$ref": "#/$defs/ExtWindowOrientEnum",
1502
+ "$ref": "#/$defs/CompassDirections8Enum",
1487
1503
  "description": "The compass direction the exterior window of the room is facing"
1488
1504
  },
1489
1505
  "extreme_event": {
@@ -1495,7 +1511,7 @@
1495
1511
  },
1496
1512
  "fao_class": {
1497
1513
  "$ref": "#/$defs/FaoClassEnum",
1498
- "description": "Soil classification from the FAO World Reference Database for Soil Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups"
1514
+ "description": "Soil classification from the FAO World soil distribution from International Soil Reference and Information Centre (ISRIC). The list of available soil classifications can be found at https://www.isric.org/explore/world-soil-distribution"
1499
1515
  },
1500
1516
  "fertilizer_regm": {
1501
1517
  "description": "Information about treatment involving the use of fertilizers; should include the name of fertilizer, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fertilizer regimens",
@@ -1544,14 +1560,7 @@
1544
1560
  ]
1545
1561
  },
1546
1562
  "fireplace_type": {
1547
- "anyOf": [
1548
- {
1549
- "$ref": "#/$defs/TextValue"
1550
- },
1551
- {
1552
- "type": "null"
1553
- }
1554
- ],
1563
+ "$ref": "#/$defs/FireplaceTypeEnum",
1555
1564
  "description": "A firebox with chimney"
1556
1565
  },
1557
1566
  "flooding": {
@@ -1570,7 +1579,8 @@
1570
1579
  "type": "null"
1571
1580
  }
1572
1581
  ],
1573
- "description": "The time period since installment of the carpet or flooring"
1582
+ "description": "The time period since installment of the carpet or flooring",
1583
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1574
1584
  },
1575
1585
  "floor_area": {
1576
1586
  "anyOf": [
@@ -1581,10 +1591,11 @@
1581
1591
  "type": "null"
1582
1592
  }
1583
1593
  ],
1584
- "description": "The area of the floor space within the room"
1594
+ "description": "The area of the floor space within the room",
1595
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1585
1596
  },
1586
1597
  "floor_cond": {
1587
- "$ref": "#/$defs/FloorCondEnum",
1598
+ "$ref": "#/$defs/DamagedEnum",
1588
1599
  "description": "The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas"
1589
1600
  },
1590
1601
  "floor_count": {
@@ -1599,8 +1610,11 @@
1599
1610
  "description": "The number of floors in the building, including basements and mechanical penthouse"
1600
1611
  },
1601
1612
  "floor_finish_mat": {
1602
- "$ref": "#/$defs/FloorFinishMatEnum",
1603
- "description": "The floor covering type; the finished surface that is walked on"
1613
+ "description": "The floor covering type; the finished surface that is walked on",
1614
+ "type": [
1615
+ "string",
1616
+ "null"
1617
+ ]
1604
1618
  },
1605
1619
  "floor_struc": {
1606
1620
  "$ref": "#/$defs/FloorStrucEnum",
@@ -1615,7 +1629,8 @@
1615
1629
  "type": "null"
1616
1630
  }
1617
1631
  ],
1618
- "description": "The ability of the floor to provide inertia against temperature fluctuations"
1632
+ "description": "The ability of the floor to provide inertia against temperature fluctuations",
1633
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1619
1634
  },
1620
1635
  "floor_water_mold": {
1621
1636
  "$ref": "#/$defs/FloorWaterMoldEnum",
@@ -1630,7 +1645,8 @@
1630
1645
  "type": "null"
1631
1646
  }
1632
1647
  ],
1633
- "description": "Raw or converted fluorescence of water"
1648
+ "description": "Raw or converted fluorescence of water",
1649
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1634
1650
  },
1635
1651
  "freq_clean": {
1636
1652
  "anyOf": [
@@ -1641,7 +1657,7 @@
1641
1657
  "type": "null"
1642
1658
  }
1643
1659
  ],
1644
- "description": "The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually."
1660
+ "description": "The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually"
1645
1661
  },
1646
1662
  "freq_cook": {
1647
1663
  "anyOf": [
@@ -1652,7 +1668,8 @@
1652
1668
  "type": "null"
1653
1669
  }
1654
1670
  ],
1655
- "description": "The number of times a meal is cooked per week"
1671
+ "description": "The number of times a meal is cooked per week",
1672
+ "pattern": "^[1-9][0-9]* .*$"
1656
1673
  },
1657
1674
  "fungicide_regm": {
1658
1675
  "description": "Information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple fungicide regimens",
@@ -1693,15 +1710,12 @@
1693
1710
  "description": "The gender type of the restroom"
1694
1711
  },
1695
1712
  "genetic_mod": {
1696
- "anyOf": [
1697
- {
1698
- "$ref": "#/$defs/TextValue"
1699
- },
1700
- {
1701
- "type": "null"
1702
- }
1703
- ],
1704
- "description": "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection"
1713
+ "description": "Genetic modifications of the genome of an organism, which may occur naturally by spontaneous mutation, or be introduced by some experimental means, e.g. specification of a transgene or the gene knocked-out or details of transient transfection",
1714
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
1715
+ "type": [
1716
+ "string",
1717
+ "null"
1718
+ ]
1705
1719
  },
1706
1720
  "geo_loc_name": {
1707
1721
  "anyOf": [
@@ -1712,7 +1726,8 @@
1712
1726
  "type": "null"
1713
1727
  }
1714
1728
  ],
1715
- "description": "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)"
1729
+ "description": "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)",
1730
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+): ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+), ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
1716
1731
  },
1717
1732
  "glucosidase_act": {
1718
1733
  "anyOf": [
@@ -1723,7 +1738,8 @@
1723
1738
  "type": "null"
1724
1739
  }
1725
1740
  ],
1726
- "description": "Measurement of glucosidase activity"
1741
+ "description": "Measurement of glucosidase activity",
1742
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1727
1743
  },
1728
1744
  "gold_biosample_identifiers": {
1729
1745
  "description": "Unique identifier for a biosample submitted to GOLD that matches the NMDC submitted biosample",
@@ -1800,7 +1816,7 @@
1800
1816
  "type": "null"
1801
1817
  }
1802
1818
  ],
1803
- "description": "The total count of hallways and cooridors in the built structure"
1819
+ "description": "The total count of hallways and corridors in the built structure"
1804
1820
  },
1805
1821
  "handidness": {
1806
1822
  "$ref": "#/$defs/HandidnessEnum",
@@ -1823,10 +1839,11 @@
1823
1839
  "type": "null"
1824
1840
  }
1825
1841
  ],
1826
- "description": "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS"
1842
+ "description": "Original formation water salinity (prior to secondary recovery e.g. Waterflooding) expressed as TDS",
1843
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1827
1844
  },
1828
1845
  "hcr_geol_age": {
1829
- "$ref": "#/$defs/HcrGeolAgeEnum",
1846
+ "$ref": "#/$defs/GeolAgeEnum",
1830
1847
  "description": "Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field"
1831
1848
  },
1832
1849
  "hcr_pressure": {
@@ -1838,7 +1855,8 @@
1838
1855
  "type": "null"
1839
1856
  }
1840
1857
  ],
1841
- "description": "Original pressure of the hydrocarbon resource"
1858
+ "description": "Original pressure of the hydrocarbon resource",
1859
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+ *- *[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
1842
1860
  },
1843
1861
  "hcr_temp": {
1844
1862
  "anyOf": [
@@ -1849,7 +1867,8 @@
1849
1867
  "type": "null"
1850
1868
  }
1851
1869
  ],
1852
- "description": "Original temperature of the hydrocarbon resource"
1870
+ "description": "Original temperature of the hydrocarbon resource",
1871
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+ *- *[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
1853
1872
  },
1854
1873
  "heat_cool_type": {
1855
1874
  "description": "Methods of conditioning or heating a room or building",
@@ -1862,7 +1881,7 @@
1862
1881
  ]
1863
1882
  },
1864
1883
  "heat_deliv_loc": {
1865
- "$ref": "#/$defs/HeatDelivLocEnum",
1884
+ "$ref": "#/$defs/CompassDirections8Enum",
1866
1885
  "description": "The location of heat delivery within the room"
1867
1886
  },
1868
1887
  "heat_sys_deliv_meth": {
@@ -1896,7 +1915,8 @@
1896
1915
  "heavy_metals_meth": {
1897
1916
  "description": "Reference or method used in determining heavy metals",
1898
1917
  "items": {
1899
- "$ref": "#/$defs/TextValue"
1918
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
1919
+ "type": "string"
1900
1920
  },
1901
1921
  "type": [
1902
1922
  "array",
@@ -1912,7 +1932,8 @@
1912
1932
  "type": "null"
1913
1933
  }
1914
1934
  ],
1915
- "description": "The average carpet fiber height in the indoor environment"
1935
+ "description": "The average carpet fiber height in the indoor environment",
1936
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1916
1937
  },
1917
1938
  "herbicide_regm": {
1918
1939
  "description": "Information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens",
@@ -1925,15 +1946,12 @@
1925
1946
  ]
1926
1947
  },
1927
1948
  "horizon_meth": {
1928
- "anyOf": [
1929
- {
1930
- "$ref": "#/$defs/TextValue"
1931
- },
1932
- {
1933
- "type": "null"
1934
- }
1935
- ],
1936
- "description": "Reference or method used in determining the horizon"
1949
+ "description": "Reference or method used in determining the horizon",
1950
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
1951
+ "type": [
1952
+ "string",
1953
+ "null"
1954
+ ]
1937
1955
  },
1938
1956
  "host_age": {
1939
1957
  "anyOf": [
@@ -1944,7 +1962,8 @@
1944
1962
  "type": "null"
1945
1963
  }
1946
1964
  ],
1947
- "description": "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees"
1965
+ "description": "Age of host at the time of sampling; relevant scale depends on species and study, e.g. Could be seconds for amoebae or centuries for trees",
1966
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1948
1967
  },
1949
1968
  "host_body_habitat": {
1950
1969
  "anyOf": [
@@ -1969,7 +1988,7 @@
1969
1988
  "type": "null"
1970
1989
  }
1971
1990
  ],
1972
- "description": "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma or https://www.ebi.ac.uk/ols/ontologies/uberon"
1991
+ "description": "Substance produced by the body, e.g. Stool, mucus, where the sample was obtained from. Use terms from the foundational model of anatomy ontology (fma) or Uber-anatomy ontology (UBERON)"
1973
1992
  },
1974
1993
  "host_body_site": {
1975
1994
  "anyOf": [
@@ -1983,7 +2002,7 @@
1983
2002
  "type": "null"
1984
2003
  }
1985
2004
  ],
1986
- "description": "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms, please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON"
2005
+ "description": "Name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). Use terms from the foundational model of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)"
1987
2006
  },
1988
2007
  "host_body_temp": {
1989
2008
  "anyOf": [
@@ -1994,7 +2013,8 @@
1994
2013
  "type": "null"
1995
2014
  }
1996
2015
  ],
1997
- "description": "Core body temperature of the host when sample was collected"
2016
+ "description": "Core body temperature of the host when sample was collected",
2017
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
1998
2018
  },
1999
2019
  "host_color": {
2000
2020
  "anyOf": [
@@ -2016,7 +2036,7 @@
2016
2036
  "type": "null"
2017
2037
  }
2018
2038
  ],
2019
- "description": "Common name of the host."
2039
+ "description": "Common name of the host"
2020
2040
  },
2021
2041
  "host_diet": {
2022
2042
  "description": "Type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types",
@@ -2029,15 +2049,11 @@
2029
2049
  ]
2030
2050
  },
2031
2051
  "host_disease_stat": {
2032
- "anyOf": [
2033
- {
2034
- "$ref": "#/$defs/TextValue"
2035
- },
2036
- {
2037
- "type": "null"
2038
- }
2039
- ],
2040
- "description": "List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text"
2052
+ "description": "List of diseases with which the host has been diagnosed; can include multiple diagnoses. The value of the field depends on host; for humans the terms should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org, non-human host diseases are free text",
2053
+ "type": [
2054
+ "string",
2055
+ "null"
2056
+ ]
2041
2057
  },
2042
2058
  "host_dry_mass": {
2043
2059
  "anyOf": [
@@ -2048,10 +2064,11 @@
2048
2064
  "type": "null"
2049
2065
  }
2050
2066
  ],
2051
- "description": "Measurement of dry mass"
2067
+ "description": "Measurement of dry mass",
2068
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2052
2069
  },
2053
2070
  "host_family_relation": {
2054
- "description": "Familial relationships to other hosts in the same study; can include multiple relationships",
2071
+ "description": "Familial relationships to other hosts in the same study; can include multiple relationships.",
2055
2072
  "items": {
2056
2073
  "type": "string"
2057
2074
  },
@@ -2080,7 +2097,8 @@
2080
2097
  "type": "null"
2081
2098
  }
2082
2099
  ],
2083
- "description": "Literature reference giving growth conditions of the host"
2100
+ "description": "Literature reference giving growth conditions of the host",
2101
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$|.*$"
2084
2102
  },
2085
2103
  "host_height": {
2086
2104
  "anyOf": [
@@ -2091,12 +2109,13 @@
2091
2109
  "type": "null"
2092
2110
  }
2093
2111
  ],
2094
- "description": "The height of subject"
2112
+ "description": "The height of subject",
2113
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2095
2114
  },
2096
2115
  "host_last_meal": {
2097
2116
  "description": "Content of last meal and time since feeding; can include multiple values",
2098
2117
  "items": {
2099
- "$ref": "#/$defs/TextValue"
2118
+ "type": "string"
2100
2119
  },
2101
2120
  "type": [
2102
2121
  "array",
@@ -2112,7 +2131,8 @@
2112
2131
  "type": "null"
2113
2132
  }
2114
2133
  ],
2115
- "description": "The length of subject"
2134
+ "description": "The length of subject",
2135
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2116
2136
  },
2117
2137
  "host_life_stage": {
2118
2138
  "anyOf": [
@@ -2143,11 +2163,14 @@
2143
2163
  "type": "null"
2144
2164
  }
2145
2165
  ],
2146
- "description": "Phenotype of human or other host. For phenotypic quality ontology (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato. For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP"
2166
+ "description": "Phenotype of human or other host. Use terms from the phenotypic quality ontology (pato) or the Human Phenotype Ontology (HP)"
2147
2167
  },
2148
2168
  "host_sex": {
2149
- "$ref": "#/$defs/HostSexEnum",
2150
- "description": "Gender or physical sex of the host."
2169
+ "description": "Gender or physical sex of the host",
2170
+ "type": [
2171
+ "string",
2172
+ "null"
2173
+ ]
2151
2174
  },
2152
2175
  "host_shape": {
2153
2176
  "anyOf": [
@@ -2169,10 +2192,10 @@
2169
2192
  "type": "null"
2170
2193
  }
2171
2194
  ],
2172
- "description": "A unique identifier by which each subject can be referred to, de-identified."
2195
+ "description": "A unique identifier by which each subject can be referred to, de-identified"
2173
2196
  },
2174
2197
  "host_subspecf_genlin": {
2175
- "description": "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.",
2198
+ "description": "Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123",
2176
2199
  "items": {
2177
2200
  "type": "string"
2178
2201
  },
@@ -2190,10 +2213,10 @@
2190
2213
  "type": "null"
2191
2214
  }
2192
2215
  ],
2193
- "description": "The growth substrate of the host."
2216
+ "description": "The growth substrate of the host"
2194
2217
  },
2195
2218
  "host_symbiont": {
2196
- "description": "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host.",
2219
+ "description": "The taxonomic name of the organism(s) found living in mutualistic, commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont can have its own symbionts. For example, parasites may have hyperparasites (=parasites of the parasite)",
2197
2220
  "items": {
2198
2221
  "type": "string"
2199
2222
  },
@@ -2222,7 +2245,8 @@
2222
2245
  "type": "null"
2223
2246
  }
2224
2247
  ],
2225
- "description": "Total mass of the host at collection, the unit depends on host"
2248
+ "description": "Total mass of the host at collection, the unit depends on host",
2249
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2226
2250
  },
2227
2251
  "host_wet_mass": {
2228
2252
  "anyOf": [
@@ -2233,7 +2257,8 @@
2233
2257
  "type": "null"
2234
2258
  }
2235
2259
  ],
2236
- "description": "Measurement of wet mass"
2260
+ "description": "Measurement of wet mass",
2261
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2237
2262
  },
2238
2263
  "humidity": {
2239
2264
  "anyOf": [
@@ -2244,7 +2269,8 @@
2244
2269
  "type": "null"
2245
2270
  }
2246
2271
  ],
2247
- "description": "Amount of water vapour in the air, at the time of sampling"
2272
+ "description": "Amount of water vapour in the air, at the time of sampling",
2273
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2248
2274
  },
2249
2275
  "humidity_regm": {
2250
2276
  "description": "Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens",
@@ -2300,7 +2326,8 @@
2300
2326
  "type": "null"
2301
2327
  }
2302
2328
  ],
2303
- "description": "Percentage of industrial effluents received by wastewater treatment plant"
2329
+ "description": "Percentage of industrial effluents received by wastewater treatment plant",
2330
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2304
2331
  },
2305
2332
  "infiltrations": {
2306
2333
  "description": "The amount of time it takes to complete each infiltration activity",
@@ -2343,10 +2370,11 @@
2343
2370
  "type": "null"
2344
2371
  }
2345
2372
  ],
2346
- "description": "The recorded value at sampling time (power density)"
2373
+ "description": "The recorded value at sampling time (power density)",
2374
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2347
2375
  },
2348
2376
  "int_wall_cond": {
2349
- "$ref": "#/$defs/IntWallCondEnum",
2377
+ "$ref": "#/$defs/DamagedEnum",
2350
2378
  "description": "The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas"
2351
2379
  },
2352
2380
  "isotope_exposure": {
@@ -2376,7 +2404,8 @@
2376
2404
  "type": "null"
2377
2405
  }
2378
2406
  ],
2379
- "description": "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)"
2407
+ "description": "Proportion of the produced fluids derived from injected water at the time of sampling. (e.g. 87%)",
2408
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2380
2409
  },
2381
2410
  "last_clean": {
2382
2411
  "anyOf": [
@@ -2398,7 +2427,8 @@
2398
2427
  "type": "null"
2399
2428
  }
2400
2429
  ],
2401
- "description": "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system"
2430
+ "description": "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees, limited to 8 decimal points, and in WGS84 system",
2431
+ "pattern": "^(-?((?:[0-8]?[0-9](?:\\.\\d{0,8})?)|90)) -?[0-9]+(?:\\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$"
2402
2432
  },
2403
2433
  "lbc_thirty": {
2404
2434
  "anyOf": [
@@ -2431,7 +2461,8 @@
2431
2461
  "type": "null"
2432
2462
  }
2433
2463
  ],
2434
- "description": "Measurement of light intensity"
2464
+ "description": "Measurement of light intensity",
2465
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2435
2466
  },
2436
2467
  "light_regm": {
2437
2468
  "anyOf": [
@@ -2442,7 +2473,7 @@
2442
2473
  "type": "null"
2443
2474
  }
2444
2475
  ],
2445
- "description": "Information about treatment(s) involving exposure to light, including both light intensity and quality."
2476
+ "description": "Information about treatment(s) involving exposure to light, including both light intensity and quality"
2446
2477
  },
2447
2478
  "light_type": {
2448
2479
  "description": "Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light",
@@ -2463,18 +2494,15 @@
2463
2494
  "type": "null"
2464
2495
  }
2465
2496
  ],
2466
- "description": "Link to additional analysis results performed on the sample"
2497
+ "description": "Link to additional analysis results performed on the sample",
2498
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$"
2467
2499
  },
2468
2500
  "link_class_info": {
2469
- "anyOf": [
2470
- {
2471
- "$ref": "#/$defs/TextValue"
2472
- },
2473
- {
2474
- "type": "null"
2475
- }
2476
- ],
2477
- "description": "Link to digitized soil maps or other soil classification information"
2501
+ "description": "Link to digitized soil maps or other soil classification information",
2502
+ "type": [
2503
+ "string",
2504
+ "null"
2505
+ ]
2478
2506
  },
2479
2507
  "link_climate_info": {
2480
2508
  "anyOf": [
@@ -2485,7 +2513,8 @@
2485
2513
  "type": "null"
2486
2514
  }
2487
2515
  ],
2488
- "description": "Link to climate resource"
2516
+ "description": "Link to climate resource",
2517
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$"
2489
2518
  },
2490
2519
  "lithology": {
2491
2520
  "$ref": "#/$defs/LithologyEnum",
@@ -2503,15 +2532,12 @@
2503
2532
  "description": "Soil classification based on local soil classification system"
2504
2533
  },
2505
2534
  "local_class_meth": {
2506
- "anyOf": [
2507
- {
2508
- "$ref": "#/$defs/TextValue"
2509
- },
2510
- {
2511
- "type": "null"
2512
- }
2513
- ],
2514
- "description": "Reference or method used in determining the local soil classification"
2535
+ "description": "Reference or method used in determining the local soil classification",
2536
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
2537
+ "type": [
2538
+ "string",
2539
+ "null"
2540
+ ]
2515
2541
  },
2516
2542
  "location": {
2517
2543
  "type": [
@@ -2528,7 +2554,8 @@
2528
2554
  "type": "null"
2529
2555
  }
2530
2556
  ],
2531
- "description": "Concentration of magnesium in the sample"
2557
+ "description": "Concentration of magnesium in the sample",
2558
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2532
2559
  },
2533
2560
  "manganese": {
2534
2561
  "anyOf": [
@@ -2550,7 +2577,8 @@
2550
2577
  "type": "null"
2551
2578
  }
2552
2579
  ],
2553
- "description": "The maximum amount of people allowed in the indoor environment"
2580
+ "description": "The maximum amount of people allowed in the indoor environment",
2581
+ "pattern": "^[1-9][0-9]* .*$"
2554
2582
  },
2555
2583
  "mean_frict_vel": {
2556
2584
  "anyOf": [
@@ -2561,7 +2589,8 @@
2561
2589
  "type": "null"
2562
2590
  }
2563
2591
  ],
2564
- "description": "Measurement of mean friction velocity"
2592
+ "description": "Measurement of mean friction velocity",
2593
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2565
2594
  },
2566
2595
  "mean_peak_frict_vel": {
2567
2596
  "anyOf": [
@@ -2572,7 +2601,8 @@
2572
2601
  "type": "null"
2573
2602
  }
2574
2603
  ],
2575
- "description": "Measurement of mean peak friction velocity"
2604
+ "description": "Measurement of mean peak friction velocity",
2605
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2576
2606
  },
2577
2607
  "mech_struc": {
2578
2608
  "$ref": "#/$defs/MechStrucEnum",
@@ -2581,7 +2611,7 @@
2581
2611
  "mechanical_damage": {
2582
2612
  "description": "Information about any mechanical damage exerted on the plant; can include multiple damages and sites",
2583
2613
  "items": {
2584
- "$ref": "#/$defs/TextValue"
2614
+ "type": "string"
2585
2615
  },
2586
2616
  "type": [
2587
2617
  "array",
@@ -2597,7 +2627,8 @@
2597
2627
  "type": "null"
2598
2628
  }
2599
2629
  ],
2600
- "description": "Methane (gas) amount or concentration at the time of sampling"
2630
+ "description": "Methane (gas) amount or concentration at the time of sampling",
2631
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2601
2632
  },
2602
2633
  "micro_biomass_c_meth": {
2603
2634
  "description": "Reference or method used in determining microbial biomass carbon",
@@ -2629,7 +2660,8 @@
2629
2660
  "type": "null"
2630
2661
  }
2631
2662
  ],
2632
- "description": "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units"
2663
+ "description": "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. If you keep this, you would need to have correction factors used for conversion to the final units",
2664
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2633
2665
  },
2634
2666
  "microbial_biomass_c": {
2635
2667
  "description": "The part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer.",
@@ -2714,7 +2746,8 @@
2714
2746
  "type": "null"
2715
2747
  }
2716
2748
  ],
2717
- "description": "Concentration of nitrate in the sample"
2749
+ "description": "Concentration of nitrate in the sample",
2750
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2718
2751
  },
2719
2752
  "nitrate_nitrogen": {
2720
2753
  "anyOf": [
@@ -2736,7 +2769,8 @@
2736
2769
  "type": "null"
2737
2770
  }
2738
2771
  ],
2739
- "description": "Concentration of nitrite in the sample"
2772
+ "description": "Concentration of nitrite in the sample",
2773
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2740
2774
  },
2741
2775
  "nitrite_nitrogen": {
2742
2776
  "anyOf": [
@@ -2758,7 +2792,8 @@
2758
2792
  "type": "null"
2759
2793
  }
2760
2794
  ],
2761
- "description": "Concentration of nitrogen (total)"
2795
+ "description": "Concentration of nitrogen (total)",
2796
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2762
2797
  },
2763
2798
  "non_microb_biomass": {
2764
2799
  "description": "Amount of biomass; should include the name for the part of biomass measured, e.g.insect, plant, total. Can include multiple measurements separated by ;",
@@ -2793,7 +2828,8 @@
2793
2828
  "type": "null"
2794
2829
  }
2795
2830
  ],
2796
- "description": "The number of pets residing in the sampled space"
2831
+ "description": "The number of pets residing in the sampled space",
2832
+ "pattern": "^[1-9][0-9]* .*$"
2797
2833
  },
2798
2834
  "number_plants": {
2799
2835
  "anyOf": [
@@ -2804,7 +2840,8 @@
2804
2840
  "type": "null"
2805
2841
  }
2806
2842
  ],
2807
- "description": "The number of plant(s) in the sampling space"
2843
+ "description": "The number of plant(s) in the sampling space",
2844
+ "pattern": "^[1-9][0-9]* .*$"
2808
2845
  },
2809
2846
  "number_resident": {
2810
2847
  "anyOf": [
@@ -2815,7 +2852,8 @@
2815
2852
  "type": "null"
2816
2853
  }
2817
2854
  ],
2818
- "description": "The number of individuals currently occupying in the sampling location"
2855
+ "description": "The number of individuals currently occupying in the sampling location",
2856
+ "pattern": "^[1-9][0-9]* .*$"
2819
2857
  },
2820
2858
  "occup_density_samp": {
2821
2859
  "anyOf": [
@@ -2841,7 +2879,8 @@
2841
2879
  "type": "null"
2842
2880
  }
2843
2881
  ],
2844
- "description": "Number of occupants present at time of sample within the given space"
2882
+ "description": "Number of occupants present at time of sample within the given space",
2883
+ "pattern": "^[1-9][0-9]* .*$"
2845
2884
  },
2846
2885
  "org_carb": {
2847
2886
  "anyOf": [
@@ -2852,7 +2891,8 @@
2852
2891
  "type": "null"
2853
2892
  }
2854
2893
  ],
2855
- "description": "Concentration of organic carbon"
2894
+ "description": "Concentration of organic carbon",
2895
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2856
2896
  },
2857
2897
  "org_count_qpcr_info": {
2858
2898
  "description": "If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)",
@@ -2870,7 +2910,8 @@
2870
2910
  "type": "null"
2871
2911
  }
2872
2912
  ],
2873
- "description": "Concentration of organic matter"
2913
+ "description": "Concentration of organic matter",
2914
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2874
2915
  },
2875
2916
  "org_nitro": {
2876
2917
  "anyOf": [
@@ -2881,7 +2922,8 @@
2881
2922
  "type": "null"
2882
2923
  }
2883
2924
  ],
2884
- "description": "Concentration of organic nitrogen"
2925
+ "description": "Concentration of organic nitrogen",
2926
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2885
2927
  },
2886
2928
  "org_nitro_method": {
2887
2929
  "description": "Method used for obtaining organic nitrogen",
@@ -2891,7 +2933,7 @@
2891
2933
  ]
2892
2934
  },
2893
2935
  "org_particles": {
2894
- "description": "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc.",
2936
+ "description": "Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc",
2895
2937
  "items": {
2896
2938
  "$ref": "#/$defs/TextValue"
2897
2939
  },
@@ -2926,7 +2968,8 @@
2926
2968
  "type": "null"
2927
2969
  }
2928
2970
  ],
2929
- "description": "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)"
2971
+ "description": "Depth of the original oil water contact (OWC) zone (average) (m TVDSS)",
2972
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2930
2973
  },
2931
2974
  "oxy_stat_samp": {
2932
2975
  "$ref": "#/$defs/OxyStatSampEnum",
@@ -2941,7 +2984,8 @@
2941
2984
  "type": "null"
2942
2985
  }
2943
2986
  ],
2944
- "description": "Oxygen (gas) amount or concentration at the time of sampling"
2987
+ "description": "Oxygen (gas) amount or concentration at the time of sampling",
2988
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2945
2989
  },
2946
2990
  "part_org_carb": {
2947
2991
  "anyOf": [
@@ -2952,7 +2996,8 @@
2952
2996
  "type": "null"
2953
2997
  }
2954
2998
  ],
2955
- "description": "Concentration of particulate organic carbon"
2999
+ "description": "Concentration of particulate organic carbon",
3000
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2956
3001
  },
2957
3002
  "part_org_nitro": {
2958
3003
  "anyOf": [
@@ -2963,7 +3008,8 @@
2963
3008
  "type": "null"
2964
3009
  }
2965
3010
  ],
2966
- "description": "Concentration of particulate organic nitrogen"
3011
+ "description": "Concentration of particulate organic nitrogen",
3012
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
2967
3013
  },
2968
3014
  "particle_class": {
2969
3015
  "description": "Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values",
@@ -3015,10 +3061,11 @@
3015
3061
  "type": "null"
3016
3062
  }
3017
3063
  ],
3018
- "description": "Concentration of petroleum hydrocarbon"
3064
+ "description": "Concentration of petroleum hydrocarbon",
3065
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3019
3066
  },
3020
3067
  "ph": {
3021
- "description": "Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid",
3068
+ "description": "pH measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid",
3022
3069
  "type": [
3023
3070
  "number",
3024
3071
  "null"
@@ -3033,7 +3080,7 @@
3033
3080
  "type": "null"
3034
3081
  }
3035
3082
  ],
3036
- "description": "Reference or method used in determining ph"
3083
+ "description": "Reference or method used in determining pH"
3037
3084
  },
3038
3085
  "ph_regm": {
3039
3086
  "description": "Information about treatment involving exposure of plants to varying levels of ph of the growth media, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimen",
@@ -3064,7 +3111,8 @@
3064
3111
  "type": "null"
3065
3112
  }
3066
3113
  ],
3067
- "description": "Concentration of phosphate"
3114
+ "description": "Concentration of phosphate",
3115
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3068
3116
  },
3069
3117
  "phosplipid_fatt_acid": {
3070
3118
  "description": "Concentration of phospholipid fatty acids; can include multiple values",
@@ -3085,7 +3133,8 @@
3085
3133
  "type": "null"
3086
3134
  }
3087
3135
  ],
3088
- "description": "Measurement of photon flux"
3136
+ "description": "Measurement of photon flux",
3137
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3089
3138
  },
3090
3139
  "plant_growth_med": {
3091
3140
  "anyOf": [
@@ -3114,7 +3163,7 @@
3114
3163
  },
3115
3164
  "plant_sex": {
3116
3165
  "$ref": "#/$defs/PlantSexEnum",
3117
- "description": "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite."
3166
+ "description": "Sex of the reproductive parts on the whole plant, e.g. pistillate, staminate, monoecieous, hermaphrodite"
3118
3167
  },
3119
3168
  "plant_struc": {
3120
3169
  "anyOf": [
@@ -3128,7 +3177,8 @@
3128
3177
  "type": "null"
3129
3178
  }
3130
3179
  ],
3131
- "description": "Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here."
3180
+ "description": "Name of plant structure the sample was obtained from; for Plant Ontology (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO, e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the sex of it can be recorded here",
3181
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+) \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\d+\\]$"
3132
3182
  },
3133
3183
  "pollutants": {
3134
3184
  "description": "Pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant",
@@ -3160,7 +3210,8 @@
3160
3210
  "type": "null"
3161
3211
  }
3162
3212
  ],
3163
- "description": "Concentration of potassium in the sample"
3213
+ "description": "Concentration of potassium in the sample",
3214
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3164
3215
  },
3165
3216
  "pour_point": {
3166
3217
  "anyOf": [
@@ -3171,7 +3222,8 @@
3171
3222
  "type": "null"
3172
3223
  }
3173
3224
  ],
3174
- "description": "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high\u00ac\u2020pour point\u00ac\u2020is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)"
3225
+ "description": "Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high pour point is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)",
3226
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3175
3227
  },
3176
3228
  "pre_treatment": {
3177
3229
  "anyOf": [
@@ -3185,8 +3237,7 @@
3185
3237
  "description": "The process of pre-treatment removes materials that can be easily collected from the raw wastewater"
3186
3238
  },
3187
3239
  "pres_animal_insect": {
3188
- "description": "The type and number of animals or insects present in the sampling space.",
3189
- "pattern": "^(cat|dog|rodent|snake|other);\\d+$",
3240
+ "description": "The type and number of animals or insects present in the sampling space",
3190
3241
  "type": [
3191
3242
  "string",
3192
3243
  "null"
@@ -3201,25 +3252,23 @@
3201
3252
  "type": "null"
3202
3253
  }
3203
3254
  ],
3204
- "description": "Pressure to which the sample is subject to, in atmospheres"
3255
+ "description": "Pressure to which the sample is subject to, in atmospheres",
3256
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3205
3257
  },
3206
3258
  "prev_land_use_meth": {
3207
3259
  "description": "Reference or method used in determining previous land use and dates",
3260
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
3208
3261
  "type": [
3209
3262
  "string",
3210
3263
  "null"
3211
3264
  ]
3212
3265
  },
3213
3266
  "previous_land_use": {
3214
- "anyOf": [
3215
- {
3216
- "$ref": "#/$defs/TextValue"
3217
- },
3218
- {
3219
- "type": "null"
3220
- }
3221
- ],
3222
- "description": "Previous land use and dates"
3267
+ "description": "Previous land use and dates",
3268
+ "type": [
3269
+ "string",
3270
+ "null"
3271
+ ]
3223
3272
  },
3224
3273
  "primary_prod": {
3225
3274
  "anyOf": [
@@ -3230,7 +3279,8 @@
3230
3279
  "type": "null"
3231
3280
  }
3232
3281
  ],
3233
- "description": "Measurement of primary production, generally measured as isotope uptake"
3282
+ "description": "Measurement of primary production, generally measured as isotope uptake",
3283
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3234
3284
  },
3235
3285
  "primary_treatment": {
3236
3286
  "anyOf": [
@@ -3252,7 +3302,8 @@
3252
3302
  "type": "null"
3253
3303
  }
3254
3304
  ],
3255
- "description": "Oil and/or gas production rates per well (e.g. 524 m3 / day)"
3305
+ "description": "Oil and/or gas production rates per well (e.g. 524 m3 / day)",
3306
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3256
3307
  },
3257
3308
  "prod_start_date": {
3258
3309
  "anyOf": [
@@ -3337,7 +3388,8 @@
3337
3388
  "type": "null"
3338
3389
  }
3339
3390
  ],
3340
- "description": "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential"
3391
+ "description": "Redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential",
3392
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3341
3393
  },
3342
3394
  "rel_air_humidity": {
3343
3395
  "anyOf": [
@@ -3348,7 +3400,8 @@
3348
3400
  "type": "null"
3349
3401
  }
3350
3402
  ],
3351
- "description": "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air"
3403
+ "description": "Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air",
3404
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3352
3405
  },
3353
3406
  "rel_humidity_out": {
3354
3407
  "anyOf": [
@@ -3359,7 +3412,8 @@
3359
3412
  "type": "null"
3360
3413
  }
3361
3414
  ],
3362
- "description": "The recorded outside relative humidity value at the time of sampling"
3415
+ "description": "The recorded outside relative humidity value at the time of sampling",
3416
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3363
3417
  },
3364
3418
  "rel_samp_loc": {
3365
3419
  "$ref": "#/$defs/RelSampLocEnum",
@@ -3392,7 +3446,8 @@
3392
3446
  "type": "null"
3393
3447
  }
3394
3448
  ],
3395
- "description": "Saturate, Aromatic, Resin and Asphaltene\u00ac\u2020(SARA) is an analysis method that divides\u00ac\u2020crude oil\u00ac\u2020components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)"
3449
+ "description": "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)",
3450
+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
3396
3451
  },
3397
3452
  "rna_collect_site": {
3398
3453
  "description": "Provide information on the site your RNA sample was collected from",
@@ -3424,10 +3479,11 @@
3424
3479
  "type": "null"
3425
3480
  }
3426
3481
  ],
3427
- "description": "The rate at which outside air replaces indoor air in a given space"
3482
+ "description": "The rate at which outside air replaces indoor air in a given space",
3483
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3428
3484
  },
3429
3485
  "room_architec_elem": {
3430
- "description": "The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure",
3486
+ "description": "The unique details and component parts that, together, form the architecture of a distinguishable space within a built structure",
3431
3487
  "type": [
3432
3488
  "string",
3433
3489
  "null"
@@ -3472,7 +3528,8 @@
3472
3528
  "type": "null"
3473
3529
  }
3474
3530
  ],
3475
- "description": "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms"
3531
+ "description": "Distance between doors (meters) in the hallway between the sampling room and adjacent rooms",
3532
+ "pattern": "^[1-9][0-9]* .*$"
3476
3533
  },
3477
3534
  "room_door_share": {
3478
3535
  "anyOf": [
@@ -3483,7 +3540,8 @@
3483
3540
  "type": "null"
3484
3541
  }
3485
3542
  ],
3486
- "description": "List of room(s) (room number, room name) sharing a door with the sampling room"
3543
+ "description": "List of room(s) (room number, room name) sharing a door with the sampling room",
3544
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);[1-9][0-9]*$"
3487
3545
  },
3488
3546
  "room_hallway": {
3489
3547
  "anyOf": [
@@ -3494,7 +3552,8 @@
3494
3552
  "type": "null"
3495
3553
  }
3496
3554
  ],
3497
- "description": "List of room(s) (room number, room name) located in the same hallway as sampling room"
3555
+ "description": "List of room(s) (room number, room name) located in the same hallway as sampling room",
3556
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);[1-9][0-9]*$"
3498
3557
  },
3499
3558
  "room_loc": {
3500
3559
  "$ref": "#/$defs/RoomLocEnum",
@@ -3516,7 +3575,8 @@
3516
3575
  "type": "null"
3517
3576
  }
3518
3577
  ],
3519
- "description": "The net floor area of sampling room. Net area excludes wall thicknesses"
3578
+ "description": "The net floor area of sampling room. Net area excludes wall thicknesses",
3579
+ "pattern": "^[1-9][0-9]* .*$"
3520
3580
  },
3521
3581
  "room_occup": {
3522
3582
  "anyOf": [
@@ -3527,17 +3587,21 @@
3527
3587
  "type": "null"
3528
3588
  }
3529
3589
  ],
3530
- "description": "Count of room occupancy at time of sampling"
3590
+ "description": "Count of room occupancy at time of sampling",
3591
+ "pattern": "^[1-9][0-9]* .*$"
3531
3592
  },
3532
3593
  "room_samp_pos": {
3533
3594
  "$ref": "#/$defs/RoomSampPosEnum",
3534
3595
  "description": "The horizontal sampling position in the room relative to architectural elements"
3535
3596
  },
3536
3597
  "room_type": {
3537
- "$ref": "#/$defs/RoomTypeEnum",
3538
- "description": "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure"
3539
- },
3540
- "room_vol": {
3598
+ "description": "The main purpose or activity of the sampling room. A room is any distinguishable space within a structure",
3599
+ "type": [
3600
+ "string",
3601
+ "null"
3602
+ ]
3603
+ },
3604
+ "room_vol": {
3541
3605
  "anyOf": [
3542
3606
  {
3543
3607
  "$ref": "#/$defs/TextValue"
@@ -3546,7 +3610,8 @@
3546
3610
  "type": "null"
3547
3611
  }
3548
3612
  ],
3549
- "description": "Volume of sampling room"
3613
+ "description": "Volume of sampling room",
3614
+ "pattern": "^[1-9][0-9]* .*$"
3550
3615
  },
3551
3616
  "room_wall_share": {
3552
3617
  "anyOf": [
@@ -3557,7 +3622,8 @@
3557
3622
  "type": "null"
3558
3623
  }
3559
3624
  ],
3560
- "description": "List of room(s) (room number, room name) sharing a wall with the sampling room"
3625
+ "description": "List of room(s) (room number, room name) sharing a wall with the sampling room",
3626
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);[1-9][0-9]*$"
3561
3627
  },
3562
3628
  "room_window_count": {
3563
3629
  "description": "Number of windows in the room",
@@ -3575,7 +3641,8 @@
3575
3641
  "type": "null"
3576
3642
  }
3577
3643
  ],
3578
- "description": "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container."
3644
+ "description": "Relevant rooting conditions such as field plot size, sowing density, container dimensions, number of plants per container",
3645
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$|.*$"
3579
3646
  },
3580
3647
  "root_med_carbon": {
3581
3648
  "anyOf": [
@@ -3586,7 +3653,7 @@
3586
3653
  "type": "null"
3587
3654
  }
3588
3655
  ],
3589
- "description": "Source of organic carbon in the culture rooting medium; e.g. sucrose."
3656
+ "description": "Source of organic carbon in the culture rooting medium; e.g. sucrose"
3590
3657
  },
3591
3658
  "root_med_macronutr": {
3592
3659
  "anyOf": [
@@ -3597,7 +3664,7 @@
3597
3664
  "type": "null"
3598
3665
  }
3599
3666
  ],
3600
- "description": "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170\u00ac\u2020mg/L)."
3667
+ "description": "Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S); e.g. KH2PO4 (170 mg/L)"
3601
3668
  },
3602
3669
  "root_med_micronutr": {
3603
3670
  "anyOf": [
@@ -3608,7 +3675,7 @@
3608
3675
  "type": "null"
3609
3676
  }
3610
3677
  ],
3611
- "description": "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2\u00ac\u2020mg/L)."
3678
+ "description": "Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L)"
3612
3679
  },
3613
3680
  "root_med_ph": {
3614
3681
  "anyOf": [
@@ -3619,7 +3686,7 @@
3619
3686
  "type": "null"
3620
3687
  }
3621
3688
  ],
3622
- "description": "pH measurement of the culture rooting medium; e.g. 5.5."
3689
+ "description": "pH measurement of the culture rooting medium; e.g. 5.5"
3623
3690
  },
3624
3691
  "root_med_regl": {
3625
3692
  "anyOf": [
@@ -3630,7 +3697,7 @@
3630
3697
  "type": "null"
3631
3698
  }
3632
3699
  ],
3633
- "description": "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5\u00ac\u2020mg/L NAA."
3700
+ "description": "Growth regulators in the culture rooting medium such as cytokinins, auxins, gybberellins, abscisic acid; e.g. 0.5 mg/L NAA"
3634
3701
  },
3635
3702
  "root_med_solid": {
3636
3703
  "anyOf": [
@@ -3641,7 +3708,7 @@
3641
3708
  "type": "null"
3642
3709
  }
3643
3710
  ],
3644
- "description": "Specification of the solidifying agent in the culture rooting medium; e.g. agar."
3711
+ "description": "Specification of the solidifying agent in the culture rooting medium; e.g. agar"
3645
3712
  },
3646
3713
  "root_med_suppl": {
3647
3714
  "anyOf": [
@@ -3652,7 +3719,7 @@
3652
3719
  "type": "null"
3653
3720
  }
3654
3721
  ],
3655
- "description": "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5\u00ac\u2020mg/L)."
3722
+ "description": "Organic supplements of the culture rooting medium, such as vitamins, amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid (0.5 mg/L)"
3656
3723
  },
3657
3724
  "salinity": {
3658
3725
  "anyOf": [
@@ -3663,7 +3730,8 @@
3663
3730
  "type": "null"
3664
3731
  }
3665
3732
  ],
3666
- "description": "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater."
3733
+ "description": "The total concentration of all dissolved salts in a liquid or solid sample. While salinity can be measured by a complete chemical analysis, this method is difficult and time consuming. More often, it is instead derived from the conductivity measurement. This is known as practical salinity. These derivations compare the specific conductance of the sample to a salinity standard such as seawater",
3734
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3667
3735
  },
3668
3736
  "salinity_category": {
3669
3737
  "description": "Categorical description of the sample's salinity. Examples: halophile, halotolerant, hypersaline, huryhaline",
@@ -3673,15 +3741,12 @@
3673
3741
  ]
3674
3742
  },
3675
3743
  "salinity_meth": {
3676
- "anyOf": [
3677
- {
3678
- "$ref": "#/$defs/TextValue"
3679
- },
3680
- {
3681
- "type": "null"
3682
- }
3683
- ],
3684
- "description": "Reference or method used in determining salinity"
3744
+ "description": "Reference or method used in determining salinity.",
3745
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
3746
+ "type": [
3747
+ "string",
3748
+ "null"
3749
+ ]
3685
3750
  },
3686
3751
  "salt_regm": {
3687
3752
  "description": "Information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple salt regimens",
@@ -3698,14 +3763,14 @@
3698
3763
  "description": "Reason for the sample"
3699
3764
  },
3700
3765
  "samp_collec_device": {
3701
- "description": "The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).",
3766
+ "description": "The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)",
3702
3767
  "type": [
3703
3768
  "string",
3704
3769
  "null"
3705
3770
  ]
3706
3771
  },
3707
3772
  "samp_collec_method": {
3708
- "description": "The method employed for collecting the sample.",
3773
+ "description": "The method employed for collecting the sample",
3709
3774
  "type": [
3710
3775
  "string",
3711
3776
  "null"
@@ -3717,11 +3782,15 @@
3717
3782
  },
3718
3783
  "samp_dis_stage": {
3719
3784
  "$ref": "#/$defs/SampDisStageEnum",
3720
- "description": "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen."
3785
+ "description": "Stage of the disease at the time of sample collection, e.g. inoculation, penetration, infection, growth and reproduction, dissemination of pathogen"
3721
3786
  },
3722
3787
  "samp_floor": {
3723
- "$ref": "#/$defs/SampFloorEnum",
3724
- "description": "The floor of the building, where the sampling room is located"
3788
+ "description": "The floor of the building, where the sampling room is located",
3789
+ "pattern": "^(?:(?:\\d*1[1-3]th|\\d*1st|\\d*2nd|\\d*3rd|\\d*[04-9]th) floor|basement|lobby)$",
3790
+ "type": [
3791
+ "string",
3792
+ "null"
3793
+ ]
3725
3794
  },
3726
3795
  "samp_loc_corr_rate": {
3727
3796
  "anyOf": [
@@ -3732,7 +3801,8 @@
3732
3801
  "type": "null"
3733
3802
  }
3734
3803
  ],
3735
- "description": "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays"
3804
+ "description": "Metal corrosion rate is the speed of metal deterioration due to environmental conditions. As environmental conditions change corrosion rates change accordingly. Therefore, long term corrosion rates are generally more informative than short term rates and for that reason they are preferred during reporting. In the case of suspected MIC, corrosion rate measurements at the time of sampling might provide insights into the involvement of certain microbial community members in MIC as well as potential microbial interplays",
3805
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+ *- *[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
3736
3806
  },
3737
3807
  "samp_mat_process": {
3738
3808
  "anyOf": [
@@ -3746,7 +3816,7 @@
3746
3816
  "type": "null"
3747
3817
  }
3748
3818
  ],
3749
- "description": "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed."
3819
+ "description": "A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed"
3750
3820
  },
3751
3821
  "samp_md": {
3752
3822
  "anyOf": [
@@ -3760,7 +3830,7 @@
3760
3830
  "description": "In non deviated well, measured depth is equal to the true vertical depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated wells, the MD is the length of trajectory of the borehole measured from the same reference or datum. Common datums used are ground level (GL), drilling rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL). If \"other\" is specified, please propose entry in \"additional info\" field"
3761
3831
  },
3762
3832
  "samp_name": {
3763
- "description": "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.",
3833
+ "description": "A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name",
3764
3834
  "type": [
3765
3835
  "string",
3766
3836
  "null"
@@ -3775,7 +3845,8 @@
3775
3845
  "type": "null"
3776
3846
  }
3777
3847
  ],
3778
- "description": "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)"
3848
+ "description": "Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde, etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)",
3849
+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
3779
3850
  },
3780
3851
  "samp_room_id": {
3781
3852
  "anyOf": [
@@ -3797,12 +3868,13 @@
3797
3868
  "type": "null"
3798
3869
  }
3799
3870
  ],
3800
- "description": "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected."
3871
+ "description": "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected",
3872
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3801
3873
  },
3802
3874
  "samp_sort_meth": {
3803
- "description": "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor.",
3875
+ "description": "Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor",
3804
3876
  "items": {
3805
- "$ref": "#/$defs/TextValue"
3877
+ "type": "string"
3806
3878
  },
3807
3879
  "type": [
3808
3880
  "array",
@@ -3818,7 +3890,8 @@
3818
3890
  "type": "null"
3819
3891
  }
3820
3892
  ],
3821
- "description": "Duration for which the sample was stored"
3893
+ "description": "Duration for which the sample was stored. Indicate the duration for which the sample was stored written in ISO 8601 format",
3894
+ "pattern": "^P(?:(?:\\d+D|\\d+M(?:\\d+D)?|\\d+Y(?:\\d+M(?:\\d+D)?)?)(?:T(?:\\d+H(?:\\d+M(?:\\d+S)?)?|\\d+M(?:\\d+S)?|\\d+S))?|T(?:\\d+H(?:\\d+M(?:\\d+S)?)?|\\d+M(?:\\d+S)?|\\d+S)|\\d+W)$"
3822
3895
  },
3823
3896
  "samp_store_loc": {
3824
3897
  "anyOf": [
@@ -3840,7 +3913,8 @@
3840
3913
  "type": "null"
3841
3914
  }
3842
3915
  ],
3843
- "description": "Temperature at which sample was stored, e.g. -80 degree Celsius"
3916
+ "description": "Temperature at which sample was stored, e.g. -80 degree Celsius",
3917
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3844
3918
  },
3845
3919
  "samp_subtype": {
3846
3920
  "$ref": "#/$defs/SampSubtypeEnum",
@@ -3855,7 +3929,8 @@
3855
3929
  "type": "null"
3856
3930
  }
3857
3931
  ],
3858
- "description": "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome\u2019 for mock community/positive controls, or 'blank sample' for negative controls."
3932
+ "description": "NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome for mock community/positive controls, or 'blank sample' for negative controls",
3933
+ "pattern": "^.* \\[NCBITaxon:\\d+\\]$"
3859
3934
  },
3860
3935
  "samp_time_out": {
3861
3936
  "anyOf": [
@@ -3877,7 +3952,7 @@
3877
3952
  "type": "null"
3878
3953
  }
3879
3954
  ],
3880
- "description": "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 \u00ac\u221eC)"
3955
+ "description": "Sample transport duration (in days or hrs) and temperature the sample was exposed to (e.g. 5.5 days; 20 C)"
3881
3956
  },
3882
3957
  "samp_tvdss": {
3883
3958
  "anyOf": [
@@ -3899,7 +3974,8 @@
3899
3974
  "type": "null"
3900
3975
  }
3901
3976
  ],
3902
- "description": "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)."
3977
+ "description": "The type of material from which the sample was obtained. For the Hydrocarbon package, samples include types like core, rock trimmings, drill cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid, produced water, injected water, swabs, etc. For the Food Package, samples are usually categorized as food, body products or tissues, or environmental material. This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)",
3978
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+) \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\d+\\]$"
3903
3979
  },
3904
3980
  "samp_weather": {
3905
3981
  "$ref": "#/$defs/SampWeatherEnum",
@@ -3952,18 +4028,12 @@
3952
4028
  "type": "null"
3953
4029
  }
3954
4030
  ],
3955
- "description": "Saturate, Aromatic, Resin and Asphaltene\u00ac\u2020(SARA) is an analysis method that divides\u00ac\u2020crude oil\u00ac\u2020components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)"
4031
+ "description": "Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that divides crude oil components according to their polarizability and polarity. There are three main methods to obtain SARA results. The most popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source: https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)",
4032
+ "pattern": "^.*;[-+]?[0-9]*\\.?[0-9]+ ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
3956
4033
  },
3957
4034
  "season": {
3958
- "anyOf": [
3959
- {
3960
- "$ref": "#/$defs/TextValue"
3961
- },
3962
- {
3963
- "type": "null"
3964
- }
3965
- ],
3966
- "description": "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)."
4035
+ "$ref": "#/$defs/SeasonEnum",
4036
+ "description": "The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)"
3967
4037
  },
3968
4038
  "season_environment": {
3969
4039
  "description": "Treatment involving an exposure to a particular season (e.g. Winter, summer, rabi, rainy etc.), treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment",
@@ -3984,7 +4054,8 @@
3984
4054
  "type": "null"
3985
4055
  }
3986
4056
  ],
3987
- "description": "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps."
4057
+ "description": "The average of all seasonal precipitation values known, or an estimated equivalent value derived by such methods as regional indexes or Isohyetal maps",
4058
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3988
4059
  },
3989
4060
  "season_temp": {
3990
4061
  "anyOf": [
@@ -3995,7 +4066,8 @@
3995
4066
  "type": "null"
3996
4067
  }
3997
4068
  ],
3998
- "description": "Mean seasonal temperature"
4069
+ "description": "Mean seasonal temperature",
4070
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
3999
4071
  },
4000
4072
  "season_use": {
4001
4073
  "$ref": "#/$defs/SeasonUseEnum",
@@ -4035,18 +4107,11 @@
4035
4107
  ]
4036
4108
  },
4037
4109
  "shading_device_cond": {
4038
- "$ref": "#/$defs/ShadingDeviceCondEnum",
4110
+ "$ref": "#/$defs/DamagedRupturedEnum",
4039
4111
  "description": "The physical condition of the shading device at the time of sampling"
4040
4112
  },
4041
4113
  "shading_device_loc": {
4042
- "anyOf": [
4043
- {
4044
- "$ref": "#/$defs/TextValue"
4045
- },
4046
- {
4047
- "type": "null"
4048
- }
4049
- ],
4114
+ "$ref": "#/$defs/ShadingDeviceLocEnum",
4050
4115
  "description": "The location of the shading device in relation to the built structure"
4051
4116
  },
4052
4117
  "shading_device_mat": {
@@ -4084,7 +4149,8 @@
4084
4149
  "type": "null"
4085
4150
  }
4086
4151
  ],
4087
- "description": "Concentration of silicate"
4152
+ "description": "Concentration of silicate",
4153
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4088
4154
  },
4089
4155
  "size_frac": {
4090
4156
  "anyOf": [
@@ -4106,7 +4172,8 @@
4106
4172
  "type": "null"
4107
4173
  }
4108
4174
  ],
4109
- "description": "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials larger than the size threshold are excluded from the sample"
4175
+ "description": "Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials smaller than the size threshold are excluded from the sample",
4176
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4110
4177
  },
4111
4178
  "size_frac_up": {
4112
4179
  "anyOf": [
@@ -4117,7 +4184,8 @@
4117
4184
  "type": "null"
4118
4185
  }
4119
4186
  ],
4120
- "description": "Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample"
4187
+ "description": "Mesh or pore size of the device used to retain the sample. Materials larger than the size threshold are excluded from the sample.",
4188
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4121
4189
  },
4122
4190
  "slope_aspect": {
4123
4191
  "anyOf": [
@@ -4128,7 +4196,8 @@
4128
4196
  "type": "null"
4129
4197
  }
4130
4198
  ],
4131
- "description": "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration."
4199
+ "description": "The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.",
4200
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4132
4201
  },
4133
4202
  "slope_gradient": {
4134
4203
  "anyOf": [
@@ -4139,7 +4208,8 @@
4139
4208
  "type": "null"
4140
4209
  }
4141
4210
  ],
4142
- "description": "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer"
4211
+ "description": "Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer",
4212
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4143
4213
  },
4144
4214
  "sludge_retent_time": {
4145
4215
  "anyOf": [
@@ -4150,7 +4220,8 @@
4150
4220
  "type": "null"
4151
4221
  }
4152
4222
  ],
4153
- "description": "The time activated sludge remains in reactor"
4223
+ "description": "The time activated sludge remains in reactor",
4224
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4154
4225
  },
4155
4226
  "sodium": {
4156
4227
  "anyOf": [
@@ -4161,22 +4232,19 @@
4161
4232
  "type": "null"
4162
4233
  }
4163
4234
  ],
4164
- "description": "Sodium concentration in the sample"
4235
+ "description": "Sodium concentration in the sample",
4236
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4165
4237
  },
4166
4238
  "soil_horizon": {
4167
4239
  "$ref": "#/$defs/SoilHorizonEnum",
4168
4240
  "description": "Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath"
4169
4241
  },
4170
4242
  "soil_text_measure": {
4171
- "anyOf": [
4172
- {
4173
- "$ref": "#/$defs/QuantityValue"
4174
- },
4175
- {
4176
- "type": "null"
4177
- }
4178
- ],
4179
- "description": "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional."
4243
+ "description": "The relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional.",
4244
+ "type": [
4245
+ "string",
4246
+ "null"
4247
+ ]
4180
4248
  },
4181
4249
  "soil_texture_meth": {
4182
4250
  "description": "Reference or method used in determining soil texture",
@@ -4194,7 +4262,7 @@
4194
4262
  "type": "null"
4195
4263
  }
4196
4264
  ],
4197
- "description": "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes."
4265
+ "description": "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes"
4198
4266
  },
4199
4267
  "soil_type_meth": {
4200
4268
  "anyOf": [
@@ -4216,10 +4284,11 @@
4216
4284
  "type": "null"
4217
4285
  }
4218
4286
  ],
4219
- "description": "The amount of solar energy that arrives at a specific area of a surface during a specific time interval"
4287
+ "description": "The amount of solar energy that arrives at a specific area of a surface during a specific time interval",
4288
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4220
4289
  },
4221
4290
  "soluble_inorg_mat": {
4222
- "description": "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc.",
4291
+ "description": "Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc",
4223
4292
  "items": {
4224
4293
  "$ref": "#/$defs/TextValue"
4225
4294
  },
@@ -4235,7 +4304,7 @@
4235
4304
  ]
4236
4305
  },
4237
4306
  "soluble_org_mat": {
4238
- "description": "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc.",
4307
+ "description": "Concentration of substances such as urea, fruit sugars, soluble proteins, drugs, pharmaceuticals, etc",
4239
4308
  "items": {
4240
4309
  "$ref": "#/$defs/TextValue"
4241
4310
  },
@@ -4253,7 +4322,8 @@
4253
4322
  "type": "null"
4254
4323
  }
4255
4324
  ],
4256
- "description": "Concentration of soluble reactive phosphorus"
4325
+ "description": "Concentration of soluble reactive phosphorus",
4326
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4257
4327
  },
4258
4328
  "source_mat_id": {
4259
4329
  "anyOf": [
@@ -4267,14 +4337,7 @@
4267
4337
  "description": "A globally unique identifier assigned to the biological sample."
4268
4338
  },
4269
4339
  "space_typ_state": {
4270
- "anyOf": [
4271
- {
4272
- "$ref": "#/$defs/TextValue"
4273
- },
4274
- {
4275
- "type": "null"
4276
- }
4277
- ],
4340
+ "$ref": "#/$defs/SpaceTypStateEnum",
4278
4341
  "description": "Customary or normal state of the space"
4279
4342
  },
4280
4343
  "specific": {
@@ -4297,14 +4360,15 @@
4297
4360
  "type": "null"
4298
4361
  }
4299
4362
  ],
4300
- "description": "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound."
4363
+ "description": "The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound",
4364
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4301
4365
  },
4302
4366
  "sr_dep_env": {
4303
4367
  "$ref": "#/$defs/SrDepEnvEnum",
4304
4368
  "description": "Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock). If \"other\" is specified, please propose entry in \"additional info\" field"
4305
4369
  },
4306
4370
  "sr_geol_age": {
4307
- "$ref": "#/$defs/SrGeolAgeEnum",
4371
+ "$ref": "#/$defs/GeolAgeEnum",
4308
4372
  "description": "Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)). If \"other\" is specified, please propose entry in \"additional info\" field"
4309
4373
  },
4310
4374
  "sr_kerog_type": {
@@ -4348,7 +4412,8 @@
4348
4412
  "type": "null"
4349
4413
  }
4350
4414
  ],
4351
- "description": "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)."
4415
+ "description": "Explain how and for how long the soil sample was stored before DNA extraction (fresh/frozen/other)",
4416
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+);P(?:(?:\\d+D|\\d+M(?:\\d+D)?|\\d+Y(?:\\d+M(?:\\d+D)?)?)(?:T(?:\\d+H(?:\\d+M(?:\\d+S)?)?|\\d+M(?:\\d+S)?|\\d+S))?|T(?:\\d+H(?:\\d+M(?:\\d+S)?)?|\\d+M(?:\\d+S)?|\\d+S)|\\d+W)$"
4352
4417
  },
4353
4418
  "substructure_type": {
4354
4419
  "description": "The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level",
@@ -4379,7 +4444,8 @@
4379
4444
  "type": "null"
4380
4445
  }
4381
4446
  ],
4382
- "description": "Concentration of sulfate in the sample"
4447
+ "description": "Concentration of sulfate in the sample",
4448
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4383
4449
  },
4384
4450
  "sulfate_fw": {
4385
4451
  "anyOf": [
@@ -4390,7 +4456,8 @@
4390
4456
  "type": "null"
4391
4457
  }
4392
4458
  ],
4393
- "description": "Original sulfate concentration in the hydrocarbon resource"
4459
+ "description": "Original sulfate concentration in the hydrocarbon resource",
4460
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4394
4461
  },
4395
4462
  "sulfide": {
4396
4463
  "anyOf": [
@@ -4401,7 +4468,8 @@
4401
4468
  "type": "null"
4402
4469
  }
4403
4470
  ],
4404
- "description": "Concentration of sulfide in the sample"
4471
+ "description": "Concentration of sulfide in the sample",
4472
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4405
4473
  },
4406
4474
  "surf_air_cont": {
4407
4475
  "description": "Contaminant identified on surface",
@@ -4422,7 +4490,8 @@
4422
4490
  "type": "null"
4423
4491
  }
4424
4492
  ],
4425
- "description": "Surfaces: water activity as a function of air and material moisture"
4493
+ "description": "Surfaces: water activity as a function of air and material moisture",
4494
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4426
4495
  },
4427
4496
  "surf_material": {
4428
4497
  "$ref": "#/$defs/SurfMaterialEnum",
@@ -4437,7 +4506,8 @@
4437
4506
  "type": "null"
4438
4507
  }
4439
4508
  ],
4440
- "description": "Water held on a surface"
4509
+ "description": "Water held on a surface",
4510
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4441
4511
  },
4442
4512
  "surf_moisture_ph": {
4443
4513
  "description": "ph measurement of surface",
@@ -4455,7 +4525,8 @@
4455
4525
  "type": "null"
4456
4526
  }
4457
4527
  ],
4458
- "description": "Temperature of the surface at the time of sampling"
4528
+ "description": "Temperature of the surface at the time of sampling",
4529
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4459
4530
  },
4460
4531
  "suspend_part_matter": {
4461
4532
  "anyOf": [
@@ -4466,7 +4537,8 @@
4466
4537
  "type": "null"
4467
4538
  }
4468
4539
  ],
4469
- "description": "Concentration of suspended particulate matter"
4540
+ "description": "Concentration of suspended particulate matter",
4541
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4470
4542
  },
4471
4543
  "suspend_solids": {
4472
4544
  "description": "Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances",
@@ -4487,7 +4559,8 @@
4487
4559
  "type": "null"
4488
4560
  }
4489
4561
  ],
4490
- "description": "Total Acid Number\u00ac\u2020(TAN) is a measurement of acidity that is determined by the amount of\u00ac\u2020potassium hydroxide\u00ac\u2020in milligrams that is needed to neutralize the acids in one gram of oil.\u00ac\u2020It is an important quality measurement of\u00ac\u2020crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)"
4562
+ "description": "Total Acid Number (TAN) is a measurement of acidity that is determined by the amount of potassium hydroxide in milligrams that is needed to neutralize the acids in one gram of oil. It is an important quality measurement of crude oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)",
4563
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4491
4564
  },
4492
4565
  "technical_reps": {
4493
4566
  "description": "If sending technical replicates of the same sample, indicate the replicate count.",
@@ -4505,7 +4578,8 @@
4505
4578
  "type": "null"
4506
4579
  }
4507
4580
  ],
4508
- "description": "Temperature of the sample at the time of sampling."
4581
+ "description": "Temperature of the sample at the time of sampling",
4582
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4509
4583
  },
4510
4584
  "temp_out": {
4511
4585
  "anyOf": [
@@ -4516,7 +4590,8 @@
4516
4590
  "type": "null"
4517
4591
  }
4518
4592
  ],
4519
- "description": "The recorded temperature value at sampling time outside"
4593
+ "description": "The recorded temperature value at sampling time outside",
4594
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4520
4595
  },
4521
4596
  "tertiary_treatment": {
4522
4597
  "anyOf": [
@@ -4552,7 +4627,8 @@
4552
4627
  "type": "null"
4553
4628
  }
4554
4629
  ],
4555
- "description": "Description of plant tissue culture growth media used"
4630
+ "description": "Description of plant tissue culture growth media used",
4631
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$|.*$"
4556
4632
  },
4557
4633
  "toluene": {
4558
4634
  "anyOf": [
@@ -4563,7 +4639,8 @@
4563
4639
  "type": "null"
4564
4640
  }
4565
4641
  ],
4566
- "description": "Concentration of toluene in the sample"
4642
+ "description": "Concentration of toluene in the sample",
4643
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4567
4644
  },
4568
4645
  "tot_carb": {
4569
4646
  "anyOf": [
@@ -4574,7 +4651,8 @@
4574
4651
  "type": "null"
4575
4652
  }
4576
4653
  ],
4577
- "description": "Total carbon content"
4654
+ "description": "Total carbon content",
4655
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4578
4656
  },
4579
4657
  "tot_depth_water_col": {
4580
4658
  "anyOf": [
@@ -4585,7 +4663,8 @@
4585
4663
  "type": "null"
4586
4664
  }
4587
4665
  ],
4588
- "description": "Measurement of total depth of water column"
4666
+ "description": "Measurement of total depth of water column",
4667
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4589
4668
  },
4590
4669
  "tot_diss_nitro": {
4591
4670
  "anyOf": [
@@ -4596,7 +4675,8 @@
4596
4675
  "type": "null"
4597
4676
  }
4598
4677
  ],
4599
- "description": "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen"
4678
+ "description": "Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen",
4679
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4600
4680
  },
4601
4681
  "tot_inorg_nitro": {
4602
4682
  "anyOf": [
@@ -4607,7 +4687,8 @@
4607
4687
  "type": "null"
4608
4688
  }
4609
4689
  ],
4610
- "description": "Total inorganic nitrogen content"
4690
+ "description": "Total inorganic nitrogen content",
4691
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4611
4692
  },
4612
4693
  "tot_iron": {
4613
4694
  "anyOf": [
@@ -4618,7 +4699,8 @@
4618
4699
  "type": "null"
4619
4700
  }
4620
4701
  ],
4621
- "description": "Concentration of total iron in the sample"
4702
+ "description": "Concentration of total iron in the sample",
4703
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4622
4704
  },
4623
4705
  "tot_nitro": {
4624
4706
  "anyOf": [
@@ -4629,10 +4711,12 @@
4629
4711
  "type": "null"
4630
4712
  }
4631
4713
  ],
4632
- "description": "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen"
4714
+ "description": "Total nitrogen concentration of water samples, calculated by: total nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured without filtering, reported as nitrogen",
4715
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4633
4716
  },
4634
4717
  "tot_nitro_cont_meth": {
4635
4718
  "description": "Reference or method used in determining the total nitrogen",
4719
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
4636
4720
  "type": [
4637
4721
  "string",
4638
4722
  "null"
@@ -4647,18 +4731,16 @@
4647
4731
  "type": "null"
4648
4732
  }
4649
4733
  ],
4650
- "description": "Total nitrogen content of the sample"
4734
+ "description": "Total nitrogen content of the sample",
4735
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4651
4736
  },
4652
4737
  "tot_org_c_meth": {
4653
- "anyOf": [
4654
- {
4655
- "$ref": "#/$defs/TextValue"
4656
- },
4657
- {
4658
- "type": "null"
4659
- }
4660
- ],
4661
- "description": "Reference or method used in determining total organic carbon"
4738
+ "description": "Reference or method used in determining total organic carbon",
4739
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$",
4740
+ "type": [
4741
+ "string",
4742
+ "null"
4743
+ ]
4662
4744
  },
4663
4745
  "tot_org_carb": {
4664
4746
  "anyOf": [
@@ -4669,7 +4751,8 @@
4669
4751
  "type": "null"
4670
4752
  }
4671
4753
  ],
4672
- "description": "Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content"
4754
+ "description": "Total organic carbon content",
4755
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4673
4756
  },
4674
4757
  "tot_part_carb": {
4675
4758
  "anyOf": [
@@ -4680,7 +4763,8 @@
4680
4763
  "type": "null"
4681
4764
  }
4682
4765
  ],
4683
- "description": "Total particulate carbon content"
4766
+ "description": "Total particulate carbon content",
4767
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4684
4768
  },
4685
4769
  "tot_phosp": {
4686
4770
  "anyOf": [
@@ -4691,7 +4775,8 @@
4691
4775
  "type": "null"
4692
4776
  }
4693
4777
  ],
4694
- "description": "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus"
4778
+ "description": "Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus",
4779
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4695
4780
  },
4696
4781
  "tot_phosphate": {
4697
4782
  "anyOf": [
@@ -4702,7 +4787,8 @@
4702
4787
  "type": "null"
4703
4788
  }
4704
4789
  ],
4705
- "description": "Total amount or concentration of phosphate"
4790
+ "description": "Total amount or concentration of phosphate",
4791
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4706
4792
  },
4707
4793
  "tot_sulfur": {
4708
4794
  "anyOf": [
@@ -4713,7 +4799,8 @@
4713
4799
  "type": "null"
4714
4800
  }
4715
4801
  ],
4716
- "description": "Concentration of total sulfur in the sample"
4802
+ "description": "Concentration of total sulfur in the sample",
4803
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4717
4804
  },
4718
4805
  "train_line": {
4719
4806
  "$ref": "#/$defs/TrainLineEnum",
@@ -4736,7 +4823,8 @@
4736
4823
  "type": "null"
4737
4824
  }
4738
4825
  ],
4739
- "description": "Measure of the amount of cloudiness or haziness in water caused by individual particles"
4826
+ "description": "Measure of the amount of cloudiness or haziness in water caused by individual particles",
4827
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4740
4828
  },
4741
4829
  "tvdss_of_hcr_press": {
4742
4830
  "anyOf": [
@@ -4747,7 +4835,8 @@
4747
4835
  "type": "null"
4748
4836
  }
4749
4837
  ],
4750
- "description": "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)."
4838
+ "description": "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m)",
4839
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4751
4840
  },
4752
4841
  "tvdss_of_hcr_temp": {
4753
4842
  "anyOf": [
@@ -4758,7 +4847,8 @@
4758
4847
  "type": "null"
4759
4848
  }
4760
4849
  ],
4761
- "description": "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)."
4850
+ "description": "True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original temperature was measured (e.g. 1345 m)",
4851
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4762
4852
  },
4763
4853
  "typ_occup_density": {
4764
4854
  "description": "Customary or normal density of occupants",
@@ -4783,7 +4873,8 @@
4783
4873
  "type": "null"
4784
4874
  }
4785
4875
  ],
4786
- "description": "Ventilation rate of the system in the sampled premises"
4876
+ "description": "Ventilation rate of the system in the sampled premises",
4877
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4787
4878
  },
4788
4879
  "ventilation_type": {
4789
4880
  "anyOf": [
@@ -4805,7 +4896,8 @@
4805
4896
  "type": "null"
4806
4897
  }
4807
4898
  ],
4808
- "description": "Concentration of Volatile Fatty Acids in the sample"
4899
+ "description": "Concentration of Volatile Fatty Acids in the sample",
4900
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4809
4901
  },
4810
4902
  "vfa_fw": {
4811
4903
  "anyOf": [
@@ -4816,11 +4908,15 @@
4816
4908
  "type": "null"
4817
4909
  }
4818
4910
  ],
4819
- "description": "Original volatile fatty acid concentration in the hydrocarbon resource"
4911
+ "description": "Original volatile fatty acid concentration in the hydrocarbon resource",
4912
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4820
4913
  },
4821
4914
  "vis_media": {
4822
- "$ref": "#/$defs/VisMediaEnum",
4823
- "description": "The building visual media"
4915
+ "description": "The building visual media",
4916
+ "type": [
4917
+ "string",
4918
+ "null"
4919
+ ]
4824
4920
  },
4825
4921
  "viscosity": {
4826
4922
  "anyOf": [
@@ -4831,7 +4927,7 @@
4831
4927
  "type": "null"
4832
4928
  }
4833
4929
  ],
4834
- "description": "A measure of oil's resistance\u00ac\u2020to gradual deformation by\u00ac\u2020shear stress\u00ac\u2020or\u00ac\u2020tensile stress (e.g. 3.5 cp; 100 \u00ac\u221eC)"
4930
+ "description": "A measure of oil's resistance to gradual deformation by shear stress or tensile stress (e.g. 3.5 cp; 100 C)"
4835
4931
  },
4836
4932
  "volatile_org_comp": {
4837
4933
  "description": "Concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound",
@@ -4852,11 +4948,12 @@
4852
4948
  "type": "null"
4853
4949
  }
4854
4950
  ],
4855
- "description": "The total area of the sampled room's walls"
4951
+ "description": "The total area of the sampled room's walls",
4952
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4856
4953
  },
4857
4954
  "wall_const_type": {
4858
4955
  "$ref": "#/$defs/WallConstTypeEnum",
4859
- "description": "The building class of the wall defined by the composition of the building elements and fire-resistance rating."
4956
+ "description": "The building class of the wall defined by the composition of the building elements and fire-resistance rating"
4860
4957
  },
4861
4958
  "wall_finish_mat": {
4862
4959
  "$ref": "#/$defs/WallFinishMatEnum",
@@ -4871,10 +4968,11 @@
4871
4968
  "type": "null"
4872
4969
  }
4873
4970
  ],
4874
- "description": "The average height of the walls in the sampled room"
4971
+ "description": "The average height of the walls in the sampled room",
4972
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4875
4973
  },
4876
4974
  "wall_loc": {
4877
- "$ref": "#/$defs/WallLocEnum",
4975
+ "$ref": "#/$defs/CompassDirections8Enum",
4878
4976
  "description": "The relative location of the wall within the room"
4879
4977
  },
4880
4978
  "wall_surf_treatment": {
@@ -4882,7 +4980,7 @@
4882
4980
  "description": "The surface treatment of interior wall"
4883
4981
  },
4884
4982
  "wall_texture": {
4885
- "$ref": "#/$defs/WallTextureEnum",
4983
+ "$ref": "#/$defs/CeilingWallTextureEnum",
4886
4984
  "description": "The feel, appearance, or consistency of a wall surface"
4887
4985
  },
4888
4986
  "wall_thermal_mass": {
@@ -4894,17 +4992,11 @@
4894
4992
  "type": "null"
4895
4993
  }
4896
4994
  ],
4897
- "description": "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint"
4995
+ "description": "The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint",
4996
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4898
4997
  },
4899
4998
  "wall_water_mold": {
4900
- "anyOf": [
4901
- {
4902
- "$ref": "#/$defs/TextValue"
4903
- },
4904
- {
4905
- "type": "null"
4906
- }
4907
- ],
4999
+ "$ref": "#/$defs/MoldVisibilityEnum",
4908
5000
  "description": "Signs of the presence of mold or mildew on a wall"
4909
5001
  },
4910
5002
  "wastewater_type": {
@@ -4916,7 +5008,7 @@
4916
5008
  "type": "null"
4917
5009
  }
4918
5010
  ],
4919
- "description": "The origin of wastewater such as human waste, rainfall, storm drains, etc."
5011
+ "description": "The origin of wastewater such as human waste, rainfall, storm drains, etc"
4920
5012
  },
4921
5013
  "water_cont_soil_meth": {
4922
5014
  "description": "Reference or method used in determining the water content of soil",
@@ -4928,6 +5020,7 @@
4928
5020
  "water_content": {
4929
5021
  "description": "Water content measurement",
4930
5022
  "items": {
5023
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$",
4931
5024
  "type": "string"
4932
5025
  },
4933
5026
  "type": [
@@ -4944,7 +5037,8 @@
4944
5037
  "type": "null"
4945
5038
  }
4946
5039
  ],
4947
- "description": "Measurement of magnitude and direction of flow within a fluid"
5040
+ "description": "Measurement of magnitude and direction of flow within a fluid",
5041
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4948
5042
  },
4949
5043
  "water_cut": {
4950
5044
  "anyOf": [
@@ -4955,7 +5049,8 @@
4955
5049
  "type": "null"
4956
5050
  }
4957
5051
  ],
4958
- "description": "Current amount of water (%) in a produced fluid stream; or the average of the combined streams"
5052
+ "description": "Current amount of water (%) in a produced fluid stream; or the average of the combined streams",
5053
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4959
5054
  },
4960
5055
  "water_feat_size": {
4961
5056
  "anyOf": [
@@ -4966,7 +5061,8 @@
4966
5061
  "type": "null"
4967
5062
  }
4968
5063
  ],
4969
- "description": "The size of the water feature"
5064
+ "description": "The size of the water feature",
5065
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4970
5066
  },
4971
5067
  "water_feat_type": {
4972
5068
  "$ref": "#/$defs/WaterFeatTypeEnum",
@@ -4981,7 +5077,8 @@
4981
5077
  "type": "null"
4982
5078
  }
4983
5079
  ],
4984
- "description": "Water production rates per well (e.g. 987 m3 / day)"
5080
+ "description": "Water production rates per well (e.g. 987 m3 / day)",
5081
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
4985
5082
  },
4986
5083
  "water_temp_regm": {
4987
5084
  "description": "Information about treatment involving an exposure to water with varying degree of temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens",
@@ -5038,10 +5135,11 @@
5038
5135
  "type": "null"
5039
5136
  }
5040
5137
  ],
5041
- "description": "Speed of wind measured at the time of sampling"
5138
+ "description": "speed of wind measured at the time of sampling",
5139
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
5042
5140
  },
5043
5141
  "window_cond": {
5044
- "$ref": "#/$defs/WindowCondEnum",
5142
+ "$ref": "#/$defs/DamagedRupturedEnum",
5045
5143
  "description": "The physical condition of the window at the time of sampling"
5046
5144
  },
5047
5145
  "window_cover": {
@@ -5053,7 +5151,7 @@
5053
5151
  "description": "The horizontal position of the window on the wall"
5054
5152
  },
5055
5153
  "window_loc": {
5056
- "$ref": "#/$defs/WindowLocEnum",
5154
+ "$ref": "#/$defs/CompassDirections8Enum",
5057
5155
  "description": "The relative location of the window within the room"
5058
5156
  },
5059
5157
  "window_mat": {
@@ -5083,14 +5181,7 @@
5083
5181
  "description": "The window's length and width"
5084
5182
  },
5085
5183
  "window_status": {
5086
- "anyOf": [
5087
- {
5088
- "$ref": "#/$defs/TextValue"
5089
- },
5090
- {
5091
- "type": "null"
5092
- }
5093
- ],
5184
+ "$ref": "#/$defs/WindowStatusEnum",
5094
5185
  "description": "Defines whether the windows were open or closed during environmental testing"
5095
5186
  },
5096
5187
  "window_type": {
@@ -5102,15 +5193,8 @@
5102
5193
  "description": "The vertical position of the window on the wall"
5103
5194
  },
5104
5195
  "window_water_mold": {
5105
- "anyOf": [
5106
- {
5107
- "$ref": "#/$defs/TextValue"
5108
- },
5109
- {
5110
- "type": "null"
5111
- }
5112
- ],
5113
- "description": "Signs of the presence of mold or mildew on the window."
5196
+ "$ref": "#/$defs/MoldVisibilityEnum",
5197
+ "description": "Signs of the presence of mold or mildew on the window"
5114
5198
  },
5115
5199
  "xylene": {
5116
5200
  "anyOf": [
@@ -5121,7 +5205,8 @@
5121
5205
  "type": "null"
5122
5206
  }
5123
5207
  ],
5124
- "description": "Concentration of xylene in the sample"
5208
+ "description": "Concentration of xylene in the sample",
5209
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$"
5125
5210
  },
5126
5211
  "zinc": {
5127
5212
  "anyOf": [
@@ -5162,10 +5247,11 @@
5162
5247
  "BioticRelationshipEnum": {
5163
5248
  "description": "",
5164
5249
  "enum": [
5250
+ "commensalism",
5165
5251
  "free living",
5166
- "parasite",
5167
- "commensal",
5168
- "symbiont"
5252
+ "mutualism",
5253
+ "parasitism",
5254
+ "symbiotic"
5169
5255
  ],
5170
5256
  "title": "BioticRelationshipEnum",
5171
5257
  "type": "string"
@@ -5193,19 +5279,19 @@
5193
5279
  "BuildOccupTypeEnum": {
5194
5280
  "description": "",
5195
5281
  "enum": [
5196
- "office",
5282
+ "airport",
5283
+ "commercial",
5284
+ "health care",
5285
+ "high rise",
5286
+ "low rise",
5197
5287
  "market",
5198
- "restaurant",
5288
+ "office",
5199
5289
  "residence",
5200
- "school",
5201
5290
  "residential",
5202
- "commercial",
5203
- "low rise",
5204
- "high rise",
5205
- "wood framed",
5206
- "health care",
5207
- "airport",
5208
- "sports complex"
5291
+ "restaurant",
5292
+ "school",
5293
+ "sports complex",
5294
+ "wood framed"
5209
5295
  ],
5210
5296
  "title": "BuildOccupTypeEnum",
5211
5297
  "type": "string"
@@ -5213,14 +5299,23 @@
5213
5299
  "BuildingSettingEnum": {
5214
5300
  "description": "",
5215
5301
  "enum": [
5216
- "urban",
5217
- "suburban",
5218
5302
  "exurban",
5219
- "rural"
5303
+ "rural",
5304
+ "suburban",
5305
+ "urban"
5220
5306
  ],
5221
5307
  "title": "BuildingSettingEnum",
5222
5308
  "type": "string"
5223
5309
  },
5310
+ "BuiltStrucSetEnum": {
5311
+ "description": "",
5312
+ "enum": [
5313
+ "rural",
5314
+ "urban"
5315
+ ],
5316
+ "title": "BuiltStrucSetEnum",
5317
+ "type": "string"
5318
+ },
5224
5319
  "CalibrationInformation": {
5225
5320
  "additionalProperties": false,
5226
5321
  "allOf": [
@@ -5351,69 +5446,66 @@
5351
5446
  "title": "CalibrationTargetEnum",
5352
5447
  "type": "string"
5353
5448
  },
5354
- "CeilCondEnum": {
5355
- "description": "",
5356
- "enum": [
5357
- "new",
5358
- "visible wear",
5359
- "needs repair",
5360
- "damaged",
5361
- "rupture"
5362
- ],
5363
- "title": "CeilCondEnum",
5364
- "type": "string"
5365
- },
5366
5449
  "CeilFinishMatEnum": {
5367
5450
  "description": "",
5368
5451
  "enum": [
5452
+ "PVC",
5369
5453
  "drywall",
5454
+ "fiberglass",
5455
+ "metal",
5370
5456
  "mineral fibre",
5371
- "tiles",
5372
- "PVC",
5457
+ "mineral wool/calcium silicate",
5373
5458
  "plasterboard",
5374
- "metal",
5375
- "fiberglass",
5376
5459
  "stucco",
5377
- "mineral wool/calcium silicate",
5460
+ "tiles",
5378
5461
  "wood"
5379
5462
  ],
5380
5463
  "title": "CeilFinishMatEnum",
5381
5464
  "type": "string"
5382
5465
  },
5383
- "CeilTextureEnum": {
5466
+ "CeilStrucEnum": {
5384
5467
  "description": "",
5385
5468
  "enum": [
5386
- "crows feet",
5387
- "crows-foot stomp",
5388
- "double skip",
5389
- "hawk and trowel",
5390
- "knockdown",
5391
- "popcorn",
5392
- "orange peel",
5393
- "rosebud stomp",
5394
- "Santa-Fe texture",
5395
- "skip trowel",
5396
- "smooth",
5397
- "stomp knockdown",
5398
- "swirl"
5469
+ "concrete",
5470
+ "wood frame"
5399
5471
  ],
5400
- "title": "CeilTextureEnum",
5472
+ "title": "CeilStrucEnum",
5401
5473
  "type": "string"
5402
5474
  },
5403
5475
  "CeilTypeEnum": {
5404
5476
  "description": "",
5405
5477
  "enum": [
5406
- "cathedral",
5407
- "dropped",
5408
- "concave",
5409
5478
  "barrel-shaped",
5479
+ "cathedral",
5410
5480
  "coffered",
5481
+ "concave",
5411
5482
  "cove",
5483
+ "dropped",
5412
5484
  "stretched"
5413
5485
  ],
5414
5486
  "title": "CeilTypeEnum",
5415
5487
  "type": "string"
5416
5488
  },
5489
+ "CeilingWallTextureEnum": {
5490
+ "description": "",
5491
+ "enum": [
5492
+ "Santa-Fe texture",
5493
+ "crows feet",
5494
+ "crows-foot stomp",
5495
+ "double skip",
5496
+ "hawk and trowel",
5497
+ "knockdown",
5498
+ "orange peel",
5499
+ "popcorn",
5500
+ "rosebud stomp",
5501
+ "skip trowel",
5502
+ "smooth",
5503
+ "stomp knockdown",
5504
+ "swirl"
5505
+ ],
5506
+ "title": "CeilingWallTextureEnum",
5507
+ "type": "string"
5508
+ },
5417
5509
  "ChemicalConversionCategoryEnum": {
5418
5510
  "description": "",
5419
5511
  "enum": [
@@ -6008,6 +6100,21 @@
6008
6100
  "title": "CollectingBiosamplesFromSite",
6009
6101
  "type": "object"
6010
6102
  },
6103
+ "CompassDirections8Enum": {
6104
+ "description": "",
6105
+ "enum": [
6106
+ "east",
6107
+ "north",
6108
+ "northeast",
6109
+ "northwest",
6110
+ "south",
6111
+ "southeast",
6112
+ "southwest",
6113
+ "west"
6114
+ ],
6115
+ "title": "CompassDirections8Enum",
6116
+ "type": "string"
6117
+ },
6011
6118
  "ContainerCategoryEnum": {
6012
6119
  "description": "The permitted types of containers used in processing metabolomic samples.",
6013
6120
  "enum": [
@@ -6199,6 +6306,30 @@
6199
6306
  "title": "CurLandUseEnum",
6200
6307
  "type": "string"
6201
6308
  },
6309
+ "DamagedEnum": {
6310
+ "description": "",
6311
+ "enum": [
6312
+ "damaged",
6313
+ "needs repair",
6314
+ "new",
6315
+ "rupture",
6316
+ "visible wear"
6317
+ ],
6318
+ "title": "DamagedEnum",
6319
+ "type": "string"
6320
+ },
6321
+ "DamagedRupturedEnum": {
6322
+ "description": "",
6323
+ "enum": [
6324
+ "damaged",
6325
+ "needs repair",
6326
+ "new",
6327
+ "rupture",
6328
+ "visible wear"
6329
+ ],
6330
+ "title": "DamagedRupturedEnum",
6331
+ "type": "string"
6332
+ },
6202
6333
  "DataCategoryEnum": {
6203
6334
  "description": "",
6204
6335
  "enum": [
@@ -6581,21 +6712,21 @@
6581
6712
  "DeposEnvEnum": {
6582
6713
  "description": "",
6583
6714
  "enum": [
6584
- "Continental - Alluvial",
6585
6715
  "Continental - Aeolian",
6716
+ "Continental - Alluvial",
6586
6717
  "Continental - Fluvial",
6587
6718
  "Continental - Lacustrine",
6588
- "Transitional - Deltaic",
6589
- "Transitional - Tidal",
6590
- "Transitional - Lagoonal",
6591
- "Transitional - Beach",
6592
- "Transitional - Lake",
6593
- "Marine - Shallow",
6594
6719
  "Marine - Deep",
6595
6720
  "Marine - Reef",
6721
+ "Marine - Shallow",
6596
6722
  "Other - Evaporite",
6597
6723
  "Other - Glacial",
6598
6724
  "Other - Volcanic",
6725
+ "Transitional - Beach",
6726
+ "Transitional - Deltaic",
6727
+ "Transitional - Lagoonal",
6728
+ "Transitional - Lake",
6729
+ "Transitional - Tidal",
6599
6730
  "other"
6600
6731
  ],
6601
6732
  "title": "DeposEnvEnum",
@@ -6877,18 +7008,6 @@
6877
7008
  "title": "DoorCompTypeEnum",
6878
7009
  "type": "string"
6879
7010
  },
6880
- "DoorCondEnum": {
6881
- "description": "",
6882
- "enum": [
6883
- "damaged",
6884
- "needs repair",
6885
- "new",
6886
- "rupture",
6887
- "visible wear"
6888
- ],
6889
- "title": "DoorCondEnum",
6890
- "type": "string"
6891
- },
6892
7011
  "DoorDirectEnum": {
6893
7012
  "description": "",
6894
7013
  "enum": [
@@ -6899,17 +7018,6 @@
6899
7018
  "title": "DoorDirectEnum",
6900
7019
  "type": "string"
6901
7020
  },
6902
- "DoorLocEnum": {
6903
- "description": "",
6904
- "enum": [
6905
- "north",
6906
- "south",
6907
- "east",
6908
- "west"
6909
- ],
6910
- "title": "DoorLocEnum",
6911
- "type": "string"
6912
- },
6913
7021
  "DoorMatEnum": {
6914
7022
  "description": "",
6915
7023
  "enum": [
@@ -6962,32 +7070,15 @@
6962
7070
  "title": "DoorTypeMetalEnum",
6963
7071
  "type": "string"
6964
7072
  },
6965
- "DoorTypeWoodEnum": {
6966
- "description": "",
6967
- "enum": [
6968
- "bettened and ledged",
6969
- "battened",
6970
- "ledged and braced",
6971
- "ledged and framed",
6972
- "ledged, braced and frame",
6973
- "framed and paneled",
6974
- "glashed or sash",
6975
- "flush",
6976
- "louvered",
6977
- "wire gauged"
6978
- ],
6979
- "title": "DoorTypeWoodEnum",
6980
- "type": "string"
6981
- },
6982
7073
  "DrainageClassEnum": {
6983
7074
  "description": "",
6984
7075
  "enum": [
6985
- "very poorly",
7076
+ "excessively drained",
7077
+ "moderately well",
6986
7078
  "poorly",
6987
7079
  "somewhat poorly",
6988
- "moderately well",
6989
- "well",
6990
- "excessively drained"
7080
+ "very poorly",
7081
+ "well"
6991
7082
  ],
6992
7083
  "title": "DrainageClassEnum",
6993
7084
  "type": "string"
@@ -6995,13 +7086,13 @@
6995
7086
  "DrawingsEnum": {
6996
7087
  "description": "",
6997
7088
  "enum": [
6998
- "operation",
6999
7089
  "as built",
7000
- "construction",
7001
7090
  "bid",
7002
- "design",
7003
7091
  "building navigation map",
7092
+ "construction",
7093
+ "design",
7004
7094
  "diagram",
7095
+ "operation",
7005
7096
  "sketch"
7006
7097
  ],
7007
7098
  "title": "DrawingsEnum",
@@ -7167,36 +7258,6 @@
7167
7258
  "title": "ExecutionResourceEnum",
7168
7259
  "type": "string"
7169
7260
  },
7170
- "ExtWallOrientEnum": {
7171
- "description": "",
7172
- "enum": [
7173
- "north",
7174
- "south",
7175
- "east",
7176
- "west",
7177
- "northeast",
7178
- "southeast",
7179
- "southwest",
7180
- "northwest"
7181
- ],
7182
- "title": "ExtWallOrientEnum",
7183
- "type": "string"
7184
- },
7185
- "ExtWindowOrientEnum": {
7186
- "description": "",
7187
- "enum": [
7188
- "north",
7189
- "south",
7190
- "east",
7191
- "west",
7192
- "northeast",
7193
- "southeast",
7194
- "southwest",
7195
- "northwest"
7196
- ],
7197
- "title": "ExtWindowOrientEnum",
7198
- "type": "string"
7199
- },
7200
7261
  "Extraction": {
7201
7262
  "additionalProperties": false,
7202
7263
  "description": "A material separation in which a desired component of an input material is separated from the remainder.",
@@ -7454,10 +7515,15 @@
7454
7515
  "description": "",
7455
7516
  "enum": [
7456
7517
  "Acrisols",
7518
+ "Alisols",
7457
7519
  "Andosols",
7520
+ "Anthrosols",
7458
7521
  "Arenosols",
7522
+ "Calcisols",
7459
7523
  "Cambisols",
7460
7524
  "Chernozems",
7525
+ "Cryosols",
7526
+ "Durisols",
7461
7527
  "Ferralsols",
7462
7528
  "Fluvisols",
7463
7529
  "Gleysols",
@@ -7466,10 +7532,13 @@
7466
7532
  "Histosols",
7467
7533
  "Kastanozems",
7468
7534
  "Lithosols",
7535
+ "Leptosols",
7536
+ "Lixisols",
7469
7537
  "Luvisols",
7470
7538
  "Nitosols",
7471
7539
  "Phaeozems",
7472
7540
  "Planosols",
7541
+ "Plinthosols",
7473
7542
  "Podzols",
7474
7543
  "Podzoluvisols",
7475
7544
  "Rankers",
@@ -7477,6 +7546,9 @@
7477
7546
  "Rendzinas",
7478
7547
  "Solonchaks",
7479
7548
  "Solonetz",
7549
+ "Stagnosols",
7550
+ "Technosols",
7551
+ "Umbrisols",
7480
7552
  "Vertisols",
7481
7553
  "Yermosols"
7482
7554
  ],
@@ -7517,7 +7589,8 @@
7517
7589
  ]
7518
7590
  },
7519
7591
  "elev": {
7520
- "description": "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit.",
7592
+ "description": "Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit",
7593
+ "pattern": "^[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\\.?[0-9]+(?:[eE][-+]?[0-9]+)?)? *.*$",
7521
7594
  "type": [
7522
7595
  "number",
7523
7596
  "null"
@@ -7532,7 +7605,8 @@
7532
7605
  "type": "null"
7533
7606
  }
7534
7607
  ],
7535
- "description": "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)"
7608
+ "description": "The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)",
7609
+ "pattern": "^([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+): ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+), ([^\\s-]{1,2}|[^\\s-]+.+[^\\s-]+)$"
7536
7610
  },
7537
7611
  "habitat": {
7538
7612
  "type": [
@@ -7554,7 +7628,8 @@
7554
7628
  "type": "null"
7555
7629
  }
7556
7630
  ],
7557
- "description": "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system"
7631
+ "description": "The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees, limited to 8 decimal points, and in WGS84 system",
7632
+ "pattern": "^(-?((?:[0-8]?[0-9](?:\\.\\d{0,8})?)|90)) -?[0-9]+(?:\\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$"
7558
7633
  },
7559
7634
  "local_class": {
7560
7635
  "anyOf": [
@@ -7594,7 +7669,7 @@
7594
7669
  "type": "null"
7595
7670
  }
7596
7671
  ],
7597
- "description": "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes."
7672
+ "description": "Description of the soil type or classification. This field accepts terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998). Multiple terms can be separated by pipes"
7598
7673
  },
7599
7674
  "type": {
7600
7675
  "description": "the class_uri of the class that has been instantiated",
@@ -7721,12 +7796,12 @@
7721
7796
  "FilterTypeEnum": {
7722
7797
  "description": "",
7723
7798
  "enum": [
7724
- "particulate air filter",
7725
- "chemical air filter",
7726
- "low-MERV pleated media",
7727
7799
  "HEPA",
7800
+ "chemical air filter",
7728
7801
  "electrostatic",
7729
- "gas-phase or ultraviolet air treatments"
7802
+ "gas-phase or ultraviolet air treatments",
7803
+ "low-MERV pleated media",
7804
+ "particulate air filter"
7730
7805
  ],
7731
7806
  "title": "FilterTypeEnum",
7732
7807
  "type": "string"
@@ -7929,53 +8004,25 @@
7929
8004
  "title": "FiltrationProcess",
7930
8005
  "type": "object"
7931
8006
  },
7932
- "FloorCondEnum": {
8007
+ "FireplaceTypeEnum": {
7933
8008
  "description": "",
7934
8009
  "enum": [
7935
- "new",
7936
- "visible wear",
7937
- "needs repair",
7938
- "damaged",
7939
- "rupture"
8010
+ "gas burning",
8011
+ "wood burning"
7940
8012
  ],
7941
- "title": "FloorCondEnum",
7942
- "type": "string"
7943
- },
7944
- "FloorFinishMatEnum": {
7945
- "description": "",
7946
- "enum": [
7947
- "tile",
7948
- "wood strip or parquet",
7949
- "carpet",
7950
- "rug",
7951
- "laminate wood",
7952
- "lineoleum",
7953
- "vinyl composition tile",
7954
- "sheet vinyl",
7955
- "stone",
7956
- "bamboo",
7957
- "cork",
7958
- "terrazo",
7959
- "concrete",
7960
- "none",
7961
- "sealed",
7962
- "clear finish",
7963
- "paint",
7964
- "none or unfinished"
7965
- ],
7966
- "title": "FloorFinishMatEnum",
8013
+ "title": "FireplaceTypeEnum",
7967
8014
  "type": "string"
7968
8015
  },
7969
8016
  "FloorStrucEnum": {
7970
8017
  "description": "",
7971
8018
  "enum": [
7972
8019
  "balcony",
8020
+ "concrete",
7973
8021
  "floating floor",
7974
8022
  "glass floor",
7975
8023
  "raised floor",
7976
8024
  "sprung floor",
7977
- "wood-framed",
7978
- "concrete"
8025
+ "wood-framed"
7979
8026
  ],
7980
8027
  "title": "FloorStrucEnum",
7981
8028
  "type": "string"
@@ -7983,15 +8030,15 @@
7983
8030
  "FloorWaterMoldEnum": {
7984
8031
  "description": "",
7985
8032
  "enum": [
7986
- "mold odor",
7987
- "wet floor",
7988
- "water stains",
7989
- "wall discoloration",
7990
- "floor discoloration",
8033
+ "bulging walls",
7991
8034
  "ceiling discoloration",
8035
+ "condensation",
8036
+ "floor discoloration",
8037
+ "mold odor",
7992
8038
  "peeling paint or wallpaper",
7993
- "bulging walls",
7994
- "condensation"
8039
+ "wall discoloration",
8040
+ "water stains",
8041
+ "wet floor"
7995
8042
  ],
7996
8043
  "title": "FloorWaterMoldEnum",
7997
8044
  "type": "string"
@@ -7999,11 +8046,11 @@
7999
8046
  "FreqCleanEnum": {
8000
8047
  "description": "",
8001
8048
  "enum": [
8049
+ "Annually",
8002
8050
  "Daily",
8003
- "Weekly",
8004
8051
  "Monthly",
8005
8052
  "Quarterly",
8006
- "Annually",
8053
+ "Weekly",
8007
8054
  "other"
8008
8055
  ],
8009
8056
  "title": "FreqCleanEnum",
@@ -8108,7 +8155,7 @@
8108
8155
  "enum": [
8109
8156
  "all gender",
8110
8157
  "female",
8111
- "gender neurtral",
8158
+ "gender neutral",
8112
8159
  "male",
8113
8160
  "male and female",
8114
8161
  "unisex"
@@ -8241,6 +8288,31 @@
8241
8288
  "title": "GenomeFeature",
8242
8289
  "type": "object"
8243
8290
  },
8291
+ "GeolAgeEnum": {
8292
+ "description": "",
8293
+ "enum": [
8294
+ "Archean",
8295
+ "Cambrian",
8296
+ "Carboniferous",
8297
+ "Cenozoic",
8298
+ "Cretaceous",
8299
+ "Devonian",
8300
+ "Jurassic",
8301
+ "Mesozoic",
8302
+ "Neogene",
8303
+ "Ordovician",
8304
+ "Paleogene",
8305
+ "Paleozoic",
8306
+ "Permian",
8307
+ "Precambrian",
8308
+ "Proterozoic",
8309
+ "Silurian",
8310
+ "Triassic",
8311
+ "other"
8312
+ ],
8313
+ "title": "GeolAgeEnum",
8314
+ "type": "string"
8315
+ },
8244
8316
  "GeolocationValue": {
8245
8317
  "additionalProperties": false,
8246
8318
  "description": "A normalized value for a location on the earth's surface",
@@ -8280,9 +8352,9 @@
8280
8352
  "description": "",
8281
8353
  "enum": [
8282
8354
  "erect",
8355
+ "prostrate",
8283
8356
  "semi-erect",
8284
- "spreading",
8285
- "prostrate"
8357
+ "spreading"
8286
8358
  ],
8287
8359
  "title": "GrowthHabitEnum",
8288
8360
  "type": "string"
@@ -8301,11 +8373,11 @@
8301
8373
  "HcProducedEnum": {
8302
8374
  "description": "",
8303
8375
  "enum": [
8304
- "Oil",
8305
- "Gas-Condensate",
8306
- "Gas",
8307
8376
  "Bitumen",
8308
8377
  "Coalbed Methane",
8378
+ "Gas",
8379
+ "Gas-Condensate",
8380
+ "Oil",
8309
8381
  "other"
8310
8382
  ],
8311
8383
  "title": "HcProducedEnum",
@@ -8314,64 +8386,37 @@
8314
8386
  "HcrEnum": {
8315
8387
  "description": "",
8316
8388
  "enum": [
8317
- "Oil Reservoir",
8389
+ "Coalbed",
8318
8390
  "Gas Reservoir",
8391
+ "Oil Reservoir",
8319
8392
  "Oil Sand",
8320
- "Coalbed",
8321
8393
  "Shale",
8322
- "Tight Oil Reservoir",
8323
8394
  "Tight Gas Reservoir",
8395
+ "Tight Oil Reservoir",
8324
8396
  "other"
8325
8397
  ],
8326
8398
  "title": "HcrEnum",
8327
8399
  "type": "string"
8328
8400
  },
8329
- "HcrGeolAgeEnum": {
8330
- "description": "",
8331
- "enum": [
8332
- "Archean",
8333
- "Cambrian",
8334
- "Carboniferous",
8335
- "Cenozoic",
8336
- "Cretaceous",
8337
- "Devonian",
8338
- "Jurassic",
8339
- "Mesozoic",
8340
- "Neogene",
8341
- "Ordovician",
8342
- "Paleogene",
8343
- "Paleozoic",
8344
- "Permian",
8345
- "Precambrian",
8346
- "Proterozoic",
8347
- "Silurian",
8348
- "Triassic",
8349
- "other"
8350
- ],
8351
- "title": "HcrGeolAgeEnum",
8352
- "type": "string"
8353
- },
8354
8401
  "HeatCoolTypeEnum": {
8355
8402
  "description": "",
8356
8403
  "enum": [
8357
- "radiant system",
8358
- "heat pump",
8359
8404
  "forced air system",
8405
+ "heat pump",
8406
+ "radiant system",
8360
8407
  "steam forced heat",
8361
8408
  "wood stove"
8362
8409
  ],
8363
8410
  "title": "HeatCoolTypeEnum",
8364
8411
  "type": "string"
8365
8412
  },
8366
- "HeatDelivLocEnum": {
8413
+ "HeatSysDelivMethEnum": {
8367
8414
  "description": "",
8368
8415
  "enum": [
8369
- "north",
8370
- "south",
8371
- "east",
8372
- "west"
8416
+ "conductive",
8417
+ "radiant"
8373
8418
  ],
8374
- "title": "HeatDelivLocEnum",
8419
+ "title": "HeatSysDelivMethEnum",
8375
8420
  "type": "string"
8376
8421
  },
8377
8422
  "HostSexEnum": {
@@ -8437,14 +8482,14 @@
8437
8482
  "IndoorSpaceEnum": {
8438
8483
  "description": "",
8439
8484
  "enum": [
8440
- "bedroom",
8441
- "office",
8442
8485
  "bathroom",
8486
+ "bedroom",
8487
+ "elevator",
8443
8488
  "foyer",
8489
+ "hallway",
8444
8490
  "kitchen",
8445
8491
  "locker room",
8446
- "hallway",
8447
- "elevator"
8492
+ "office"
8448
8493
  ],
8449
8494
  "title": "IndoorSpaceEnum",
8450
8495
  "type": "string"
@@ -8458,8 +8503,8 @@
8458
8503
  "door",
8459
8504
  "shelving",
8460
8505
  "vent cover",
8461
- "window",
8462
- "wall"
8506
+ "wall",
8507
+ "window"
8463
8508
  ],
8464
8509
  "title": "IndoorSurfEnum",
8465
8510
  "type": "string"
@@ -8584,18 +8629,6 @@
8584
8629
  "title": "InstrumentVendorEnum",
8585
8630
  "type": "string"
8586
8631
  },
8587
- "IntWallCondEnum": {
8588
- "description": "",
8589
- "enum": [
8590
- "new",
8591
- "visible wear",
8592
- "needs repair",
8593
- "damaged",
8594
- "rupture"
8595
- ],
8596
- "title": "IntWallCondEnum",
8597
- "type": "string"
8598
- },
8599
8632
  "IonizationSourceEnum": {
8600
8633
  "description": "",
8601
8634
  "enum": [
@@ -8710,18 +8743,15 @@
8710
8743
  "type": "null"
8711
8744
  }
8712
8745
  ],
8713
- "description": "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids"
8746
+ "description": "A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids",
8747
+ "pattern": "^^PMID:\\d+$|^doi:10.\\d{2,9}/.*$|^https?:\\/\\/(?:www\\.)?[-a-zA-Z0-9@:%._\\+~#=]{1,256}\\.[a-zA-Z0-9()]{1,6}\\b(?:[-a-zA-Z0-9()@:%_\\+.~#?&\\/=]*)$$"
8714
8748
  },
8715
8749
  "pcr_cond": {
8716
- "anyOf": [
8717
- {
8718
- "$ref": "#/$defs/TextValue"
8719
- },
8720
- {
8721
- "type": "null"
8722
- }
8723
- ],
8724
- "description": "Description of reaction conditions and components of polymerase chain reaction performed during library preparation"
8750
+ "description": "Description of reaction conditions and components of polymerase chain reaction performed during library preparation",
8751
+ "type": [
8752
+ "string",
8753
+ "null"
8754
+ ]
8725
8755
  },
8726
8756
  "pcr_cycles": {
8727
8757
  "type": [
@@ -8730,15 +8760,12 @@
8730
8760
  ]
8731
8761
  },
8732
8762
  "pcr_primers": {
8733
- "anyOf": [
8734
- {
8735
- "$ref": "#/$defs/TextValue"
8736
- },
8737
- {
8738
- "type": "null"
8739
- }
8740
- ],
8741
- "description": "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters"
8763
+ "description": "PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters",
8764
+ "pattern": "FWD:[ACGT];REV:[ACGT]",
8765
+ "type": [
8766
+ "string",
8767
+ "null"
8768
+ ]
8742
8769
  },
8743
8770
  "processing_institution": {
8744
8771
  "$ref": "#/$defs/ProcessingInstitutionEnum",
@@ -8820,10 +8847,10 @@
8820
8847
  "LightTypeEnum": {
8821
8848
  "description": "",
8822
8849
  "enum": [
8823
- "natural light",
8824
- "electric light",
8825
8850
  "desk lamp",
8826
- "flourescent lights",
8851
+ "electric light",
8852
+ "fluorescent lights",
8853
+ "natural light",
8827
8854
  "none"
8828
8855
  ],
8829
8856
  "title": "LightTypeEnum",
@@ -9759,15 +9786,15 @@
9759
9786
  "MechStrucEnum": {
9760
9787
  "description": "",
9761
9788
  "enum": [
9762
- "subway",
9763
- "coach",
9789
+ "boat",
9790
+ "bus",
9791
+ "car",
9764
9792
  "carriage",
9793
+ "coach",
9765
9794
  "elevator",
9766
9795
  "escalator",
9767
- "boat",
9768
- "train",
9769
- "car",
9770
- "bus"
9796
+ "subway",
9797
+ "train"
9771
9798
  ],
9772
9799
  "title": "MechStrucEnum",
9773
9800
  "type": "string"
@@ -11990,6 +12017,15 @@
11990
12017
  "title": "MobilePhaseSegment",
11991
12018
  "type": "object"
11992
12019
  },
12020
+ "MoldVisibilityEnum": {
12021
+ "description": "",
12022
+ "enum": [
12023
+ "no presence of mold visible",
12024
+ "presence of mold visible"
12025
+ ],
12026
+ "title": "MoldVisibilityEnum",
12027
+ "type": "string"
12028
+ },
11993
12029
  "NomAnalysis": {
11994
12030
  "additionalProperties": false,
11995
12031
  "allOf": [
@@ -12562,16 +12598,6 @@
12562
12598
  "title": "OntologyRelation",
12563
12599
  "type": "object"
12564
12600
  },
12565
- "OrganismCountEnum": {
12566
- "description": "",
12567
- "enum": [
12568
- "ATP",
12569
- "MPN",
12570
- "other"
12571
- ],
12572
- "title": "OrganismCountEnum",
12573
- "type": "string"
12574
- },
12575
12601
  "OrthologyGroup": {
12576
12602
  "additionalProperties": false,
12577
12603
  "description": "A set of genes or gene products in which all members are orthologous",
@@ -12824,29 +12850,13 @@
12824
12850
  "title": "PersonValue",
12825
12851
  "type": "object"
12826
12852
  },
12827
- "PlantGrowthMedEnum": {
12828
- "description": "",
12829
- "enum": [
12830
- "other artificial liquid medium",
12831
- "other artificial solid medium",
12832
- "peat moss",
12833
- "perlite",
12834
- "pumice",
12835
- "sand",
12836
- "soil",
12837
- "vermiculite",
12838
- "water"
12839
- ],
12840
- "title": "PlantGrowthMedEnum",
12841
- "type": "string"
12842
- },
12843
12853
  "PlantSexEnum": {
12844
12854
  "description": "",
12845
12855
  "enum": [
12846
12856
  "Androdioecious",
12847
12857
  "Androecious",
12848
- "Androgynous",
12849
12858
  "Androgynomonoecious",
12859
+ "Androgynous",
12850
12860
  "Andromonoecious",
12851
12861
  "Bisexual",
12852
12862
  "Dichogamous",
@@ -13198,10 +13208,10 @@
13198
13208
  "ProfilePositionEnum": {
13199
13209
  "description": "",
13200
13210
  "enum": [
13201
- "summit",
13202
- "shoulder",
13203
13211
  "backslope",
13204
13212
  "footslope",
13213
+ "shoulder",
13214
+ "summit",
13205
13215
  "toeslope"
13206
13216
  ],
13207
13217
  "title": "ProfilePositionEnum",
@@ -13446,10 +13456,10 @@
13446
13456
  "QuadPosEnum": {
13447
13457
  "description": "",
13448
13458
  "enum": [
13459
+ "East side",
13449
13460
  "North side",
13450
- "West side",
13451
13461
  "South side",
13452
- "East side"
13462
+ "West side"
13453
13463
  ],
13454
13464
  "title": "QuadPosEnum",
13455
13465
  "type": "string"
@@ -13974,8 +13984,8 @@
13974
13984
  "RelSampLocEnum": {
13975
13985
  "description": "",
13976
13986
  "enum": [
13977
- "edge of car",
13978
13987
  "center of car",
13988
+ "edge of car",
13979
13989
  "under a seat"
13980
13990
  ],
13981
13991
  "title": "RelSampLocEnum",
@@ -13993,12 +14003,12 @@
13993
14003
  "RoomCondtEnum": {
13994
14004
  "description": "",
13995
14005
  "enum": [
13996
- "new",
13997
- "visible wear",
13998
- "needs repair",
13999
14006
  "damaged",
14007
+ "needs repair",
14008
+ "new",
14000
14009
  "rupture",
14001
- "visible signs of mold/mildew"
14010
+ "visible signs of mold/mildew",
14011
+ "visible wear"
14002
14012
  ],
14003
14013
  "title": "RoomCondtEnum",
14004
14014
  "type": "string"
@@ -14025,8 +14035,8 @@
14025
14035
  "description": "",
14026
14036
  "enum": [
14027
14037
  "corner room",
14028
- "interior room",
14029
- "exterior wall"
14038
+ "exterior wall",
14039
+ "interior room"
14030
14040
  ],
14031
14041
  "title": "RoomLocEnum",
14032
14042
  "type": "string"
@@ -14034,51 +14044,19 @@
14034
14044
  "RoomSampPosEnum": {
14035
14045
  "description": "",
14036
14046
  "enum": [
14037
- "north corner",
14038
- "south corner",
14039
- "west corner",
14047
+ "center",
14040
14048
  "east corner",
14049
+ "north corner",
14041
14050
  "northeast corner",
14042
14051
  "northwest corner",
14052
+ "south corner",
14043
14053
  "southeast corner",
14044
14054
  "southwest corner",
14045
- "center"
14055
+ "west corner"
14046
14056
  ],
14047
14057
  "title": "RoomSampPosEnum",
14048
14058
  "type": "string"
14049
14059
  },
14050
- "RoomTypeEnum": {
14051
- "description": "",
14052
- "enum": [
14053
- "attic",
14054
- "bathroom",
14055
- "closet",
14056
- "conference room",
14057
- "elevator",
14058
- "examining room",
14059
- "hallway",
14060
- "kitchen",
14061
- "mail room",
14062
- "private office",
14063
- "open office",
14064
- "stairwell",
14065
- ",restroom",
14066
- "lobby",
14067
- "vestibule",
14068
- "mechanical or electrical room",
14069
- "data center",
14070
- "laboratory_wet",
14071
- "laboratory_dry",
14072
- "gymnasium",
14073
- "natatorium",
14074
- "auditorium",
14075
- "lockers",
14076
- "cafe",
14077
- "warehouse"
14078
- ],
14079
- "title": "RoomTypeEnum",
14080
- "type": "string"
14081
- },
14082
14060
  "SampCaptStatusEnum": {
14083
14061
  "description": "",
14084
14062
  "enum": [
@@ -14094,13 +14072,13 @@
14094
14072
  "SampCollectPointEnum": {
14095
14073
  "description": "",
14096
14074
  "enum": [
14097
- "well",
14098
- "test well",
14099
14075
  "drilling rig",
14100
- "wellhead",
14076
+ "other",
14101
14077
  "separator",
14102
14078
  "storage tank",
14103
- "other"
14079
+ "test well",
14080
+ "well",
14081
+ "wellhead"
14104
14082
  ],
14105
14083
  "title": "SampCollectPointEnum",
14106
14084
  "type": "string"
@@ -14112,43 +14090,20 @@
14112
14090
  "growth and reproduction",
14113
14091
  "infection",
14114
14092
  "inoculation",
14115
- "penetration",
14116
- "other"
14093
+ "other",
14094
+ "penetration"
14117
14095
  ],
14118
14096
  "title": "SampDisStageEnum",
14119
14097
  "type": "string"
14120
14098
  },
14121
- "SampFloorEnum": {
14122
- "description": "",
14123
- "enum": [
14124
- "1st floor",
14125
- "2nd floor",
14126
- "basement",
14127
- "lobby"
14128
- ],
14129
- "title": "SampFloorEnum",
14130
- "type": "string"
14131
- },
14132
- "SampMdEnum": {
14133
- "description": "",
14134
- "enum": [
14135
- "DF",
14136
- "RT",
14137
- "KB",
14138
- "MSL",
14139
- "other"
14140
- ],
14141
- "title": "SampMdEnum",
14142
- "type": "string"
14143
- },
14144
14099
  "SampSubtypeEnum": {
14145
14100
  "description": "",
14146
14101
  "enum": [
14147
- "oil phase",
14148
- "water phase",
14149
14102
  "biofilm",
14150
14103
  "not applicable",
14151
- "other"
14104
+ "oil phase",
14105
+ "other",
14106
+ "water phase"
14152
14107
  ],
14153
14108
  "title": "SampSubtypeEnum",
14154
14109
  "type": "string"
@@ -14161,8 +14116,8 @@
14161
14116
  "foggy",
14162
14117
  "hail",
14163
14118
  "rain",
14164
- "snow",
14165
14119
  "sleet",
14120
+ "snow",
14166
14121
  "sunny",
14167
14122
  "windy"
14168
14123
  ],
@@ -14205,12 +14160,23 @@
14205
14160
  "title": "SampleTypeEnum",
14206
14161
  "type": "string"
14207
14162
  },
14163
+ "SeasonEnum": {
14164
+ "description": "",
14165
+ "enum": [
14166
+ "autumn [NCIT:C94733]",
14167
+ "spring [NCIT:C94731]",
14168
+ "summer [NCIT:C94732]",
14169
+ "winter [NCIT:C94730]"
14170
+ ],
14171
+ "title": "SeasonEnum",
14172
+ "type": "string"
14173
+ },
14208
14174
  "SeasonUseEnum": {
14209
14175
  "description": "",
14210
14176
  "enum": [
14177
+ "Fall",
14211
14178
  "Spring",
14212
14179
  "Summer",
14213
- "Fall",
14214
14180
  "Winter"
14215
14181
  ],
14216
14182
  "title": "SeasonUseEnum",
@@ -14236,16 +14202,22 @@
14236
14202
  "title": "SeparationMethodEnum",
14237
14203
  "type": "string"
14238
14204
  },
14239
- "ShadingDeviceCondEnum": {
14205
+ "SeqQualityCheckEnum": {
14240
14206
  "description": "",
14241
14207
  "enum": [
14242
- "damaged",
14243
- "needs repair",
14244
- "new",
14245
- "rupture",
14246
- "visible wear"
14208
+ "manually edited",
14209
+ "none"
14210
+ ],
14211
+ "title": "SeqQualityCheckEnum",
14212
+ "type": "string"
14213
+ },
14214
+ "ShadingDeviceLocEnum": {
14215
+ "description": "",
14216
+ "enum": [
14217
+ "exterior",
14218
+ "interior"
14247
14219
  ],
14248
- "title": "ShadingDeviceCondEnum",
14220
+ "title": "ShadingDeviceLocEnum",
14249
14221
  "type": "string"
14250
14222
  },
14251
14223
  "ShadingDeviceTypeEnum": {
@@ -14270,13 +14242,13 @@
14270
14242
  "SoilHorizonEnum": {
14271
14243
  "description": "",
14272
14244
  "enum": [
14273
- "O horizon",
14274
14245
  "A horizon",
14275
- "E horizon",
14276
14246
  "B horizon",
14277
14247
  "C horizon",
14278
- "R layer",
14248
+ "E horizon",
14249
+ "O horizon",
14279
14250
  "Permafrost",
14251
+ "R layer",
14280
14252
  "M horizon"
14281
14253
  ],
14282
14254
  "title": "SoilHorizonEnum",
@@ -14294,14 +14266,23 @@
14294
14266
  "title": "SourceSystemEnum",
14295
14267
  "type": "string"
14296
14268
  },
14269
+ "SpaceTypStateEnum": {
14270
+ "description": "",
14271
+ "enum": [
14272
+ "typically occupied",
14273
+ "typically unoccupied"
14274
+ ],
14275
+ "title": "SpaceTypStateEnum",
14276
+ "type": "string"
14277
+ },
14297
14278
  "SpecificEnum": {
14298
14279
  "description": "",
14299
14280
  "enum": [
14300
- "operation",
14301
14281
  "as built",
14302
- "construction",
14303
14282
  "bid",
14283
+ "construction",
14304
14284
  "design",
14285
+ "operation",
14305
14286
  "photos"
14306
14287
  ],
14307
14288
  "title": "SpecificEnum",
@@ -14310,40 +14291,15 @@
14310
14291
  "SrDepEnvEnum": {
14311
14292
  "description": "",
14312
14293
  "enum": [
14313
- "Lacustine",
14314
14294
  "Fluvioldeltaic",
14315
14295
  "Fluviomarine",
14296
+ "Lacustine",
14316
14297
  "Marine",
14317
14298
  "other"
14318
14299
  ],
14319
14300
  "title": "SrDepEnvEnum",
14320
14301
  "type": "string"
14321
14302
  },
14322
- "SrGeolAgeEnum": {
14323
- "description": "",
14324
- "enum": [
14325
- "Archean",
14326
- "Cambrian",
14327
- "Carboniferous",
14328
- "Cenozoic",
14329
- "Cretaceous",
14330
- "Devonian",
14331
- "Jurassic",
14332
- "Mesozoic",
14333
- "Neogene",
14334
- "Ordovician",
14335
- "Paleogene",
14336
- "Paleozoic",
14337
- "Permian",
14338
- "Precambrian",
14339
- "Proterozoic",
14340
- "Silurian",
14341
- "Triassic",
14342
- "other"
14343
- ],
14344
- "title": "SrGeolAgeEnum",
14345
- "type": "string"
14346
- },
14347
14303
  "SrKerogTypeEnum": {
14348
14304
  "description": "",
14349
14305
  "enum": [
@@ -14359,10 +14315,10 @@
14359
14315
  "SrLithologyEnum": {
14360
14316
  "description": "",
14361
14317
  "enum": [
14362
- "Clastic",
14318
+ "Biosilicieous",
14363
14319
  "Carbonate",
14320
+ "Clastic",
14364
14321
  "Coal",
14365
- "Biosilicieous",
14366
14322
  "other"
14367
14323
  ],
14368
14324
  "title": "SrLithologyEnum",
@@ -15107,9 +15063,9 @@
15107
15063
  "SubstructureTypeEnum": {
15108
15064
  "description": "",
15109
15065
  "enum": [
15066
+ "basement",
15110
15067
  "crawlspace",
15111
- "slab on grade",
15112
- "basement"
15068
+ "slab on grade"
15113
15069
  ],
15114
15070
  "title": "SubstructureTypeEnum",
15115
15071
  "type": "string"
@@ -15117,14 +15073,14 @@
15117
15073
  "SurfAirContEnum": {
15118
15074
  "description": "",
15119
15075
  "enum": [
15076
+ "biocides",
15077
+ "biological contaminants",
15120
15078
  "dust",
15079
+ "nutrients",
15121
15080
  "organic matter",
15122
15081
  "particulate matter",
15123
- "volatile organic compounds",
15124
- "biological contaminants",
15125
15082
  "radon",
15126
- "nutrients",
15127
- "biocides"
15083
+ "volatile organic compounds"
15128
15084
  ],
15129
15085
  "title": "SurfAirContEnum",
15130
15086
  "type": "string"
@@ -15136,8 +15092,8 @@
15136
15092
  "carpet",
15137
15093
  "cinder blocks",
15138
15094
  "concrete",
15139
- "hay bales",
15140
15095
  "glass",
15096
+ "hay bales",
15141
15097
  "metal",
15142
15098
  "paint",
15143
15099
  "plastic",
@@ -15197,10 +15153,10 @@
15197
15153
  "TidalStageEnum": {
15198
15154
  "description": "",
15199
15155
  "enum": [
15200
- "low tide",
15201
15156
  "ebb tide",
15202
15157
  "flood tide",
15203
- "high tide"
15158
+ "high tide",
15159
+ "low tide"
15204
15160
  ],
15205
15161
  "title": "TidalStageEnum",
15206
15162
  "type": "string"
@@ -15208,15 +15164,15 @@
15208
15164
  "TillageEnum": {
15209
15165
  "description": "",
15210
15166
  "enum": [
15211
- "drill",
15167
+ "chisel",
15212
15168
  "cutting disc",
15169
+ "disc plough",
15170
+ "drill",
15171
+ "mouldboard",
15213
15172
  "ridge till",
15214
15173
  "strip tillage",
15215
- "zonal tillage",
15216
- "chisel",
15217
15174
  "tined",
15218
- "mouldboard",
15219
- "disc plough"
15175
+ "zonal tillage"
15220
15176
  ],
15221
15177
  "title": "TillageEnum",
15222
15178
  "type": "string"
@@ -15249,9 +15205,9 @@
15249
15205
  "TrainLineEnum": {
15250
15206
  "description": "",
15251
15207
  "enum": [
15252
- "red",
15253
15208
  "green",
15254
- "orange"
15209
+ "orange",
15210
+ "red"
15255
15211
  ],
15256
15212
  "title": "TrainLineEnum",
15257
15213
  "type": "string"
@@ -15259,11 +15215,11 @@
15259
15215
  "TrainStatLocEnum": {
15260
15216
  "description": "",
15261
15217
  "enum": [
15218
+ "forest hills",
15219
+ "riverside",
15262
15220
  "south station above ground",
15263
- "south station underground",
15264
15221
  "south station amtrak",
15265
- "forest hills",
15266
- "riverside"
15222
+ "south station underground"
15267
15223
  ],
15268
15224
  "title": "TrainStatLocEnum",
15269
15225
  "type": "string"
@@ -15271,9 +15227,9 @@
15271
15227
  "TrainStopLocEnum": {
15272
15228
  "description": "",
15273
15229
  "enum": [
15230
+ "downtown",
15274
15231
  "end",
15275
- "mid",
15276
- "downtown"
15232
+ "mid"
15277
15233
  ],
15278
15234
  "title": "TrainStopLocEnum",
15279
15235
  "type": "string"
@@ -15421,29 +15377,15 @@
15421
15377
  "title": "UnitEnum",
15422
15378
  "type": "string"
15423
15379
  },
15424
- "VisMediaEnum": {
15425
- "description": "",
15426
- "enum": [
15427
- "photos",
15428
- "videos",
15429
- "commonly of the building",
15430
- "site context (adjacent buildings, vegetation, terrain, streets)",
15431
- "interiors",
15432
- "equipment",
15433
- "3D scans"
15434
- ],
15435
- "title": "VisMediaEnum",
15436
- "type": "string"
15437
- },
15438
15380
  "WallConstTypeEnum": {
15439
15381
  "description": "",
15440
15382
  "enum": [
15383
+ "fire resistive",
15441
15384
  "frame construction",
15442
15385
  "joisted masonry",
15443
15386
  "light noncombustible",
15444
15387
  "masonry noncombustible",
15445
- "modified fire resistive",
15446
- "fire resistive"
15388
+ "modified fire resistive"
15447
15389
  ],
15448
15390
  "title": "WallConstTypeEnum",
15449
15391
  "type": "string"
@@ -15451,66 +15393,34 @@
15451
15393
  "WallFinishMatEnum": {
15452
15394
  "description": "",
15453
15395
  "enum": [
15454
- "plaster",
15455
- "gypsum plaster",
15456
- "veneer plaster",
15457
- "gypsum board",
15458
- "tile",
15459
- "terrazzo",
15460
- "stone facing",
15461
15396
  "acoustical treatment",
15462
- "wood",
15397
+ "gypsum board",
15398
+ "gypsum plaster",
15399
+ "masonry",
15463
15400
  "metal",
15464
- "masonry"
15401
+ "plaster",
15402
+ "stone facing",
15403
+ "terrazzo",
15404
+ "tile",
15405
+ "veneer plaster",
15406
+ "wood"
15465
15407
  ],
15466
15408
  "title": "WallFinishMatEnum",
15467
15409
  "type": "string"
15468
15410
  },
15469
- "WallLocEnum": {
15470
- "description": "",
15471
- "enum": [
15472
- "north",
15473
- "south",
15474
- "east",
15475
- "west"
15476
- ],
15477
- "title": "WallLocEnum",
15478
- "type": "string"
15479
- },
15480
15411
  "WallSurfTreatmentEnum": {
15481
15412
  "description": "",
15482
15413
  "enum": [
15483
- "painted",
15484
- "wall paper",
15414
+ "fabric",
15485
15415
  "no treatment",
15416
+ "painted",
15486
15417
  "paneling",
15487
15418
  "stucco",
15488
- "fabric"
15419
+ "wall paper"
15489
15420
  ],
15490
15421
  "title": "WallSurfTreatmentEnum",
15491
15422
  "type": "string"
15492
15423
  },
15493
- "WallTextureEnum": {
15494
- "description": "",
15495
- "enum": [
15496
- "crows feet",
15497
- "crows-foot stomp",
15498
- "",
15499
- "double skip",
15500
- "hawk and trowel",
15501
- "knockdown",
15502
- "popcorn",
15503
- "orange peel",
15504
- "rosebud stomp",
15505
- "Santa-Fe texture",
15506
- "skip trowel",
15507
- "smooth",
15508
- "stomp knockdown",
15509
- "swirl"
15510
- ],
15511
- "title": "WallTextureEnum",
15512
- "type": "string"
15513
- },
15514
15424
  "WaterFeatTypeEnum": {
15515
15425
  "description": "",
15516
15426
  "enum": [
@@ -15526,29 +15436,17 @@
15526
15436
  "WeekdayEnum": {
15527
15437
  "description": "",
15528
15438
  "enum": [
15529
- "Monday",
15530
- "Tuesday",
15531
- "Wednesday",
15532
- "Thursday",
15533
15439
  "Friday",
15440
+ "Monday",
15534
15441
  "Saturday",
15535
- "Sunday"
15442
+ "Sunday",
15443
+ "Thursday",
15444
+ "Tuesday",
15445
+ "Wednesday"
15536
15446
  ],
15537
15447
  "title": "WeekdayEnum",
15538
15448
  "type": "string"
15539
15449
  },
15540
- "WindowCondEnum": {
15541
- "description": "",
15542
- "enum": [
15543
- "damaged",
15544
- "needs repair",
15545
- "new",
15546
- "rupture",
15547
- "visible wear"
15548
- ],
15549
- "title": "WindowCondEnum",
15550
- "type": "string"
15551
- },
15552
15450
  "WindowCoverEnum": {
15553
15451
  "description": "",
15554
15452
  "enum": [
@@ -15569,17 +15467,6 @@
15569
15467
  "title": "WindowHorizPosEnum",
15570
15468
  "type": "string"
15571
15469
  },
15572
- "WindowLocEnum": {
15573
- "description": "",
15574
- "enum": [
15575
- "north",
15576
- "south",
15577
- "east",
15578
- "west"
15579
- ],
15580
- "title": "WindowLocEnum",
15581
- "type": "string"
15582
- },
15583
15470
  "WindowMatEnum": {
15584
15471
  "description": "",
15585
15472
  "enum": [
@@ -15592,12 +15479,21 @@
15592
15479
  "title": "WindowMatEnum",
15593
15480
  "type": "string"
15594
15481
  },
15482
+ "WindowStatusEnum": {
15483
+ "description": "",
15484
+ "enum": [
15485
+ "closed",
15486
+ "open"
15487
+ ],
15488
+ "title": "WindowStatusEnum",
15489
+ "type": "string"
15490
+ },
15595
15491
  "WindowTypeEnum": {
15596
15492
  "description": "",
15597
15493
  "enum": [
15598
- "single-hung sash window",
15494
+ "fixed window",
15599
15495
  "horizontal sash window",
15600
- "fixed window"
15496
+ "single-hung sash window"
15601
15497
  ],
15602
15498
  "title": "WindowTypeEnum",
15603
15499
  "type": "string"
@@ -15606,10 +15502,10 @@
15606
15502
  "description": "",
15607
15503
  "enum": [
15608
15504
  "bottom",
15609
- "middle",
15610
- "top",
15505
+ "high",
15611
15506
  "low",
15612
- "high"
15507
+ "middle",
15508
+ "top"
15613
15509
  ],
15614
15510
  "title": "WindowVertPosEnum",
15615
15511
  "type": "string"
@@ -15877,6 +15773,6 @@
15877
15773
  },
15878
15774
  "title": "NMDC",
15879
15775
  "type": "object",
15880
- "version": "11.14.0"
15776
+ "version": "11.15.0"
15881
15777
  }
15882
15778