nmdc-schema 11.12.0rc2__py3-none-any.whl → 11.13.0__py3-none-any.whl

nmdc_schema/nmdc_materialized_patterns.schema.json

@@ -2257,7 +2257,7 @@
                 "igsn_biosample_identifiers": {
                     "description": "A list of identifiers for the biosample from the IGSN database.",
                     "items": {
-                        "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$",
+                        "pattern": "^igsn:[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$",
                         "type": "string"
                     },
                     "type": [
@@ -2649,9 +2649,9 @@
                     ]
                 },
                 "misc_param": {
-                    "description": "Any other measurement performed or parameter collected, that is not listed here",
+                    "description": "Structured miscellaneous property assertions. Use when a value cannot cleanly fit an existing, policy-governed slot.",
                     "items": {
-                        "$ref": "#/$defs/TextValue"
+                        "$ref": "#/$defs/PropertyAssertion"
                     },
                     "type": [
                         "array",
@@ -3350,7 +3350,7 @@
                 "replicate_number": {
                     "description": "If sending biological replicates, indicate the rep number here.",
                     "type": [
-                        "string",
+                        "integer",
                         "null"
                     ]
                 },
@@ -3915,7 +3915,7 @@
                     ]
                 },
                 "sample_shipped": {
-                    "description": "The total amount or size (volume (ml), mass (g) or area (m2) ) of sample sent to EMSL.",
+                    "description": "The total amount or size (volume, mass, or area) of sample sent to EMSL.",
                     "type": [
                         "string",
                         "null"
@@ -4474,7 +4474,7 @@
                 "technical_reps": {
                     "description": "If sending technical replicates of the same sample, indicate the replicate count.",
                     "type": [
-                        "string",
+                        "integer",
                         "null"
                     ]
                 },
@@ -5587,102 +5587,6 @@
             "title": "ChemicalConversionProcess",
             "type": "object"
         },
-        "ChemicalEntity": {
-            "additionalProperties": false,
-            "description": "An atom or molecule that can be represented with a chemical formula. Include lipids, glycans, natural products, drugs. There may be different terms for distinct acid-base forms, protonation states. A chemical entity is a  physical entity that pertains to chemistry or biochemistry.",
-            "properties": {
-                "alternative_identifiers": {
-                    "description": "A list of alternative identifiers for the entity.",
-                    "items": {
-                        "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,\\(\\)\\=\\#]*$",
-                        "type": "string"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "alternative_names": {
-                    "description": "A list of alternative names used to refer to the entity. The distinction between name and alternative names is application-specific.  This should not be used for identifers which have their own slots (e.g., bioproject:PRJNA406974)",
-                    "items": {
-                        "type": "string"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "chemical_formula": {
-                    "description": "A generic grouping for molecular formulae and empirical formulae",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "definition": {
-                    "description": "The definition of the ontology term as provided by the ontology.",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "description": {
-                    "description": "a human-readable description of a thing",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "id": {
-                    "description": "A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI",
-                    "pattern": "^[a-zA-Z0-9][a-zA-Z0-9_\\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\\-\\/\\.,]*$",
-                    "type": "string"
-                },
-                "is_obsolete": {
-                    "description": "A boolean value indicating whether the ontology term is obsolete.",
-                    "type": [
-                        "boolean",
-                        "null"
-                    ]
-                },
-                "is_root": {
-                    "description": "A boolean value indicating whether the ontology term is a root term; it is not a subclass of  any other term.",
-                    "type": [
-                        "boolean",
-                        "null"
-                    ]
-                },
-                "name": {
-                    "description": "A human readable label for an entity",
-                    "type": [
-                        "string",
-                        "null"
-                    ]
-                },
-                "relations": {
-                    "items": {
-                        "$ref": "#/$defs/OntologyRelation"
-                    },
-                    "type": [
-                        "array",
-                        "null"
-                    ]
-                },
-                "type": {
-                    "description": "the class_uri of the class that has been instantiated",
-                    "enum": [
-                        "nmdc:ChemicalEntity"
-                    ],
-                    "type": "string"
-                }
-            },
-            "required": [
-                "id",
-                "type"
-            ],
-            "title": "ChemicalEntity",
-            "type": "object"
-        },
         "ChemicalEntityEnum": {
             "description": "",
             "enum": [
@@ -6114,9 +6018,6 @@
                         {
                             "$ref": "#/$defs/EnvironmentalMaterialTerm"
                         },
-                        {
-                            "$ref": "#/$defs/ChemicalEntity"
-                        },
                         {
                             "$ref": "#/$defs/Pathway"
                         },
@@ -6160,9 +6061,6 @@
                         {
                             "$ref": "#/$defs/EnvironmentalMaterialTerm"
                         },
-                        {
-                            "$ref": "#/$defs/ChemicalEntity"
-                        },
                         {
                             "$ref": "#/$defs/Pathway"
                         },
@@ -6371,6 +6269,13 @@
                     "description": "A human readable label for an entity",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -7734,6 +7639,9 @@
                 "Kraken2 Classification Report",
                 "Kraken2 Taxonomic Classification",
                 "Centrifuge Taxonomic Classification",
+                "SingleM Taxonomic Classification",
+                "SingleM Krona Plot",
+                "SingleM Clustered Report",
                 "Structural Annotation GFF",
                 "Structural Annotation Stats Json",
                 "Functional Annotation GFF",
@@ -8540,7 +8448,7 @@
         },
         "Instrument": {
             "additionalProperties": false,
-            "description": "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.",
+            "description": "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. This class models the make and model of the instrument, not the specific instance of the instrument.",
             "properties": {
                 "alternative_identifiers": {
                     "description": "A list of alternative identifiers for the entity.",
@@ -8604,6 +8512,7 @@
                 "orbitrap_eclipse_tribid",
                 "orbitrap_q_exactive",
                 "orbitrap_iqx_tribrid",
+                "orbitrap_exploris_120",
                 "solarix_7T",
                 "solarix_12T",
                 "solarix_15T",
@@ -9306,6 +9215,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmag-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "too_short_contig_num": {
                     "description": "Number of contigs which were excluded from binning for length.",
                     "minimum": 0,
@@ -10061,6 +9978,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmb-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10307,6 +10232,13 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10553,9 +10485,12 @@
                     "type": "string"
                 },
                 "insdc_assembly_identifiers": {
-                    "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                    "items": {
+                        "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                        "type": "string"
+                    },
                     "type": [
-                        "string",
+                        "array",
                         "null"
                     ]
                 },
@@ -10707,6 +10642,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmgas-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -10915,6 +10858,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmp-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11152,6 +11103,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtan-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11398,9 +11357,12 @@
                     "type": "string"
                 },
                 "insdc_assembly_identifiers": {
-                    "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                    "items": {
+                        "pattern": "^insdc.sra:[A-Z]+[0-9]+(\\.[0-9]+)?$",
+                        "type": "string"
+                    },
                     "type": [
-                        "string",
+                        "array",
                         "null"
                     ]
                 },
@@ -11552,6 +11514,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtas-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -11768,6 +11738,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfmtex-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -12163,6 +12141,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfnom-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13202,10 +13188,113 @@
             "title": "ProfilePositionEnum",
             "type": "string"
         },
+        "PropertyAssertion": {
+            "additionalProperties": false,
+            "description": "A structured record of data that doesn't fit nicely within the constraints of other NMDC AttributeValues. Uses primitive ranges only.",
+            "properties": {
+                "has_attribute_id": {
+                    "description": "CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term, etc.).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_attribute_label": {
+                    "description": "Human-readable label for the property (e.g., MIxS label, ENVO term label).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_boolean_value": {
+                    "description": "Links a quantity value to a boolean",
+                    "type": [
+                        "boolean",
+                        "null"
+                    ]
+                },
+                "has_datetime_value": {
+                    "description": "Date-time value for the property in ISO-8601 format.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_maximum_numeric_value": {
+                    "description": "The maximum value part, expressed as number, of the quantity value when the value covers a range.",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_minimum_numeric_value": {
+                    "description": "The minimum value part, expressed as number, of the quantity value when the value covers a range.",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_numeric_value": {
+                    "description": "Links a quantity value to a number",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_quantity_kind_id": {
+                    "description": "Optional CURIE or IRI for the physical quantity kind (e.g., qudt:QuantityKind).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_raw_value": {
+                    "description": "Original contributor string representation (unparsed)",
+                    "type": "string"
+                },
+                "has_unit": {
+                    "description": "UCUM unit code (required only when numeric value is present)",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_value_term_id": {
+                    "description": "CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "type": {
+                    "description": "the class_uri of the class that has been instantiated",
+                    "enum": [
+                        "nmdc:PropertyAssertion"
+                    ],
+                    "type": "string"
+                }
+            },
+            "required": [
+                "has_raw_value",
+                "type"
+            ],
+            "title": "PropertyAssertion",
+            "type": "object"
+        },
         "Protocol": {
             "additionalProperties": false,
             "description": "",
             "properties": {
+                "analysis_type": {
+                    "description": "Select all the data types associated or available for this biosample",
+                    "items": {
+                        "$ref": "#/$defs/AnalysisTypeEnum"
+                    },
+                    "type": [
+                        "array",
+                        "null"
+                    ]
+                },
                 "description": {
                     "description": "a human-readable description of a thing",
                     "type": [
@@ -13220,6 +13309,10 @@
                         "null"
                     ]
                 },
+                "protocol_for": {
+                    "$ref": "#/$defs/ProtocolForEnum",
+                    "description": "The type of planned process that the protocol describes."
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13258,6 +13351,43 @@
             "title": "ProtocolCategoryEnum",
             "type": "string"
         },
+        "ProtocolForEnum": {
+            "description": "The permitted values for describing the type of planned process that a protocol describes.",
+            "enum": [
+                "AnnotatingWorkflow",
+                "ChemicalConversionProcess",
+                "ChromatographicSeparationProcess",
+                "CollectingBiosamplesFromSite",
+                "DataEmitterProcess",
+                "DataGeneration",
+                "DissolvingProcess",
+                "Extraction",
+                "FiltrationProcess",
+                "LibraryPreparation",
+                "MagsAnalysis",
+                "MassSpectrometry",
+                "MaterialProcessing",
+                "MetabolomicsAnalysis",
+                "MetagenomeAnnotation",
+                "MetagenomeAssembly",
+                "MetaproteomicsAnalysis",
+                "MetatranscriptomeAnnotation",
+                "MetatranscriptomeAssembly",
+                "MetatranscriptomeExpressionAnalysis",
+                "MixingProcess",
+                "NomAnalysis",
+                "NucleotideSequencing",
+                "PlannedProcess",
+                "Pooling",
+                "ReadBasedTaxonomyAnalysis",
+                "ReadQcAnalysis",
+                "StorageProcess",
+                "SubSamplingProcess",
+                "WorkflowExecution"
+            ],
+            "title": "ProtocolForEnum",
+            "type": "string"
+        },
         "QuadPosEnum": {
             "description": "",
             "enum": [
@@ -13489,6 +13619,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfrbt-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13735,6 +13873,14 @@
                     "pattern": "^([\\+-]?\\d{4}(?!\\d{2}\\b))((-?)((0[1-9]|1[0-2])(\\3([12]\\d|0[1-9]|3[01]))?|W([0-4]\\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\\d|[12]\\d{2}|3([0-5]\\d|6[1-6])))([T\\s]((([01]\\d|2[0-3])((:?)[0-5]\\d)?|24\\:?00)([\\.,]\\d+(?!:))?)?(\\17[0-5]\\d([\\.,]\\d+)?)?([zZ]|([\\+-])([01]\\d|2[0-3]):?([0-5]\\d)?)?)?)?$",
                     "type": "string"
                 },
+                "superseded_by": {
+                    "description": "Links a DataObject or WorkflowExecution record to a newer WorkflowExecution that  supersedes it, marking this record as outdated. The linked WorkflowExecution or resultant DataObjects should be used in favor of this record.",
+                    "pattern": "^(nmdc):wfrqc-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})(\\.[0-9]{1,})$",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -14632,7 +14778,7 @@
                     ]
                 },
                 "title": {
-                    "description": "A name given to the entity that differs from the name/label programmatically assigned to it. For example, when extracting study information for GOLD, the GOLD system has assigned a name/label. However, for display purposes, we may also wish the capture the title of the proposal that was used to fund the study.",
+                    "description": "A name given to the entity that differs from the name/label programmatically assigned to it.",
                     "type": [
                         "string",
                         "null"
@@ -15665,5 +15811,5 @@
     },
     "title": "NMDC",
     "type": "object",
-    "version": "11.12.0rc2"
+    "version": "11.13.0"
 }