nmdc-schema 11.12.0rc2__py3-none-any.whl → 11.12.1__py3-none-any.whl

nmdc_schema/nmdc_materialized_patterns.schema.json

@@ -2649,9 +2649,9 @@
                     ]
                 },
                 "misc_param": {
-                    "description": "Any other measurement performed or parameter collected, that is not listed here",
+                    "description": "Structured miscellaneous property assertions for this Biosample. Use when a value cannot cleanly fit an existing, policy-governed slot.",
                     "items": {
-                        "$ref": "#/$defs/TextValue"
+                        "$ref": "#/$defs/PropertyAssertion"
                     },
                     "type": [
                         "array",
@@ -8540,7 +8540,7 @@
         },
         "Instrument": {
             "additionalProperties": false,
-            "description": "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent.",
+            "description": "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. This class models the make and model of the instrument, not the specific instance of the instrument.",
             "properties": {
                 "alternative_identifiers": {
                     "description": "A list of alternative identifiers for the entity.",
@@ -13202,10 +13202,113 @@
             "title": "ProfilePositionEnum",
             "type": "string"
         },
+        "PropertyAssertion": {
+            "additionalProperties": false,
+            "description": "A structured record of data that doesn't fit nicely within the constraints of other NMDC AttributeValues. Uses primitive ranges only.",
+            "properties": {
+                "has_attribute_id": {
+                    "description": "CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term, etc.).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_attribute_label": {
+                    "description": "Human-readable label for the property (e.g., MIxS label, ENVO term label).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_boolean_value": {
+                    "description": "Links a quantity value to a boolean",
+                    "type": [
+                        "boolean",
+                        "null"
+                    ]
+                },
+                "has_datetime_value": {
+                    "description": "Date-time value for the property in ISO-8601 format.",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_maximum_numeric_value": {
+                    "description": "The maximum value part, expressed as number, of the quantity value when the value covers a range.",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_minimum_numeric_value": {
+                    "description": "The minimum value part, expressed as number, of the quantity value when the value covers a range.",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_numeric_value": {
+                    "description": "Links a quantity value to a number",
+                    "type": [
+                        "number",
+                        "null"
+                    ]
+                },
+                "has_quantity_kind_id": {
+                    "description": "Optional CURIE or IRI for the physical quantity kind (e.g., qudt:QuantityKind).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_raw_value": {
+                    "description": "Original contributor string representation (unparsed)",
+                    "type": "string"
+                },
+                "has_unit": {
+                    "description": "UCUM unit code (required only when numeric value is present)",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "has_value_term_id": {
+                    "description": "CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.).",
+                    "type": [
+                        "string",
+                        "null"
+                    ]
+                },
+                "type": {
+                    "description": "the class_uri of the class that has been instantiated",
+                    "enum": [
+                        "nmdc:PropertyAssertion"
+                    ],
+                    "type": "string"
+                }
+            },
+            "required": [
+                "has_raw_value",
+                "type"
+            ],
+            "title": "PropertyAssertion",
+            "type": "object"
+        },
         "Protocol": {
             "additionalProperties": false,
             "description": "",
             "properties": {
+                "analysis_type": {
+                    "description": "Select all the data types associated or available for this biosample",
+                    "items": {
+                        "$ref": "#/$defs/AnalysisTypeEnum"
+                    },
+                    "type": [
+                        "array",
+                        "null"
+                    ]
+                },
                 "description": {
                     "description": "a human-readable description of a thing",
                     "type": [
@@ -13220,6 +13323,10 @@
                         "null"
                     ]
                 },
+                "protocol_for": {
+                    "$ref": "#/$defs/ProtocolForEnum",
+                    "description": "The type of planned process that the protocol describes."
+                },
                 "type": {
                     "description": "the class_uri of the class that has been instantiated",
                     "enum": [
@@ -13258,6 +13365,43 @@
             "title": "ProtocolCategoryEnum",
             "type": "string"
         },
+        "ProtocolForEnum": {
+            "description": "The permitted values for describing the type of planned process that a protocol describes.",
+            "enum": [
+                "AnnotatingWorkflow",
+                "ChemicalConversionProcess",
+                "ChromatographicSeparationProcess",
+                "CollectingBiosamplesFromSite",
+                "DataEmitterProcess",
+                "DataGeneration",
+                "DissolvingProcess",
+                "Extraction",
+                "FiltrationProcess",
+                "LibraryPreparation",
+                "MagsAnalysis",
+                "MassSpectrometry",
+                "MaterialProcessing",
+                "MetabolomicsAnalysis",
+                "MetagenomeAnnotation",
+                "MetagenomeAssembly",
+                "MetaproteomicsAnalysis",
+                "MetatranscriptomeAnnotation",
+                "MetatranscriptomeAssembly",
+                "MetatranscriptomeExpressionAnalysis",
+                "MixingProcess",
+                "NomAnalysis",
+                "NucleotideSequencing",
+                "PlannedProcess",
+                "Pooling",
+                "ReadBasedTaxonomyAnalysis",
+                "ReadQcAnalysis",
+                "StorageProcess",
+                "SubSamplingProcess",
+                "WorkflowExecution"
+            ],
+            "title": "ProtocolForEnum",
+            "type": "string"
+        },
         "QuadPosEnum": {
             "description": "",
             "enum": [
@@ -15665,5 +15809,5 @@
     },
     "title": "NMDC",
     "type": "object",
-    "version": "11.12.0rc2"
+    "version": "11.12.1"
 }

nmdc_schema/nmdc_materialized_patterns.yaml

@@ -13,7 +13,7 @@ notes:
 - not importing any MIxS terms where the relationship between the name (SCN) and the
   id isn't 1:1
 id: https://w3id.org/nmdc/nmdc
-version: 11.12.0rc2
+version: 11.12.1
 license: https://creativecommons.org/publicdomain/zero/1.0/
 prefixes:
   BFO:
@@ -325,39 +325,6 @@ emit_prefixes:
 default_prefix: nmdc
 default_range: string
 types:
-  external_identifier:
-    name: external_identifier
-    description: A CURIE representing an external identifier
-    from_schema: https://w3id.org/nmdc/nmdc
-    see_also:
-    - https://microbiomedata.github.io/nmdc-schema/identifiers/
-    typeof: uriorcurie
-    uri: xsd:anyURI
-    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
-  bytes:
-    name: bytes
-    description: An integer value that corresponds to a size in bytes
-    from_schema: https://w3id.org/nmdc/nmdc
-    see_also:
-    - UO:0000233
-    base: int
-    uri: xsd:long
-  decimal_degree:
-    name: decimal_degree
-    description: A decimal degree expresses latitude or longitude as decimal fractions.
-    from_schema: https://w3id.org/nmdc/nmdc
-    see_also:
-    - https://en.wikipedia.org/wiki/Decimal_degrees
-    base: float
-    uri: xsd:decimal
-  language_code:
-    name: language_code
-    description: A language code conforming to ISO_639-1
-    from_schema: https://w3id.org/nmdc/nmdc
-    see_also:
-    - https://en.wikipedia.org/wiki/ISO_639-1
-    base: str
-    uri: xsd:language
   string:
     name: string
     description: A character string
@@ -588,6 +555,39 @@ types:
     base: str
     uri: xsd:string
     repr: str
+  external_identifier:
+    name: external_identifier
+    description: A CURIE representing an external identifier
+    from_schema: https://w3id.org/nmdc/nmdc
+    see_also:
+    - https://microbiomedata.github.io/nmdc-schema/identifiers/
+    typeof: uriorcurie
+    uri: xsd:anyURI
+    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
+  bytes:
+    name: bytes
+    description: An integer value that corresponds to a size in bytes
+    from_schema: https://w3id.org/nmdc/nmdc
+    see_also:
+    - UO:0000233
+    base: int
+    uri: xsd:long
+  decimal_degree:
+    name: decimal_degree
+    description: A decimal degree expresses latitude or longitude as decimal fractions.
+    from_schema: https://w3id.org/nmdc/nmdc
+    see_also:
+    - https://en.wikipedia.org/wiki/Decimal_degrees
+    base: float
+    uri: xsd:decimal
+  language_code:
+    name: language_code
+    description: A language code conforming to ISO_639-1
+    from_schema: https://w3id.org/nmdc/nmdc
+    see_also:
+    - https://en.wikipedia.org/wiki/ISO_639-1
+    base: str
+    uri: xsd:language
 enums:
   CalibrationTargetEnum:
     name: CalibrationTargetEnum
@@ -5548,6 +5548,74 @@ enums:
       NomAnalysis:
         text: NomAnalysis
         description: A failure has occurred in analyzing NOM data.
+  ProtocolForEnum:
+    name: ProtocolForEnum
+    description: The permitted values for describing the type of planned process that
+      a protocol describes.
+    comments:
+    - These are the non-abstract class descendants of PlannedProcess.
+    from_schema: https://w3id.org/nmdc/nmdc
+    permissible_values:
+      AnnotatingWorkflow:
+        text: AnnotatingWorkflow
+      ChemicalConversionProcess:
+        text: ChemicalConversionProcess
+      ChromatographicSeparationProcess:
+        text: ChromatographicSeparationProcess
+      CollectingBiosamplesFromSite:
+        text: CollectingBiosamplesFromSite
+      DataEmitterProcess:
+        text: DataEmitterProcess
+      DataGeneration:
+        text: DataGeneration
+      DissolvingProcess:
+        text: DissolvingProcess
+      Extraction:
+        text: Extraction
+      FiltrationProcess:
+        text: FiltrationProcess
+      LibraryPreparation:
+        text: LibraryPreparation
+      MagsAnalysis:
+        text: MagsAnalysis
+      MassSpectrometry:
+        text: MassSpectrometry
+      MaterialProcessing:
+        text: MaterialProcessing
+      MetabolomicsAnalysis:
+        text: MetabolomicsAnalysis
+      MetagenomeAnnotation:
+        text: MetagenomeAnnotation
+      MetagenomeAssembly:
+        text: MetagenomeAssembly
+      MetaproteomicsAnalysis:
+        text: MetaproteomicsAnalysis
+      MetatranscriptomeAnnotation:
+        text: MetatranscriptomeAnnotation
+      MetatranscriptomeAssembly:
+        text: MetatranscriptomeAssembly
+      MetatranscriptomeExpressionAnalysis:
+        text: MetatranscriptomeExpressionAnalysis
+      MixingProcess:
+        text: MixingProcess
+      NomAnalysis:
+        text: NomAnalysis
+      NucleotideSequencing:
+        text: NucleotideSequencing
+      PlannedProcess:
+        text: PlannedProcess
+      Pooling:
+        text: Pooling
+      ReadBasedTaxonomyAnalysis:
+        text: ReadBasedTaxonomyAnalysis
+      ReadQcAnalysis:
+        text: ReadQcAnalysis
+      StorageProcess:
+        text: StorageProcess
+      SubSamplingProcess:
+        text: SubSamplingProcess
+      WorkflowExecution:
+        text: WorkflowExecution
   SampleTypeEnum:
     name: SampleTypeEnum
     from_schema: https://w3id.org/nmdc/nmdc
@@ -6541,7 +6609,7 @@ slots:
     annotations:
       storage_units:
         tag: storage_units
-        value: '%|mmol/L|umol/L'
+        value: '%|mmol/L|umol/L|mg/L|g/L'
     description: When solutions A (containing substance X) and B are combined together,
       this slot captures the concentration of X in the combination
     from_schema: https://w3id.org/nmdc/nmdc
@@ -6926,8 +6994,7 @@ slots:
     mappings:
     - qud:unit
     - schema:unitCode
-    range: UnitEnum
-    required: true
+    range: string
   type:
     name: type
     description: the class_uri of the class that has been instantiated
@@ -7024,6 +7091,56 @@ slots:
     range: string
     multivalued: true
     pattern: ^[Hh][Tt][Tt][Pp][Ss]?:\/\/(?!.*[Dd][Oo][Ii]\.[Oo][Rr][Gg]).*$
+  has_attribute_label:
+    name: has_attribute_label
+    description: Human-readable label for the property (e.g., MIxS label, ENVO term
+      label).
+    comments:
+    - This provides a human-friendly name for the asserted property. For example,
+      "bicarbonate ion concentration" or "total phosphorus". The label helps with
+      readability and data discovery.
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: string
+  has_attribute_id:
+    name: has_attribute_id
+    description: CURIE or IRI for the property (MIxS slot, NMDC slot, ENVO/OBI term,
+      etc.).
+    comments:
+    - This provides a resolvable identifier for the property being asserted. Examples
+      include MIXS:0000117 for total phosphorus, or ENVO:01001357 for bicarbonate
+      ion concentration.
+    - Prefer using standard ontology terms (ENVO, PATO, OBI, etc.) or MIxS identifiers
+      when available to enhance interoperability.
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: uriorcurie
+  has_quantity_kind_id:
+    name: has_quantity_kind_id
+    description: Optional CURIE or IRI for the physical quantity kind (e.g., qudt:QuantityKind).
+    comments:
+    - This slot enables precise semantic description of what physical quantity is
+      being measured, independent of the specific units used. For example, qudt:MassConcentration
+      or qudt:Temperature.
+    - Using quantity kind identifiers from QUDT or similar vocabularies improves data
+      integration and enables automated unit conversion.
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: uriorcurie
+  has_value_term_id:
+    name: has_value_term_id
+    description: CURIE or IRI for categorical values (ENVO, PATO, METPO, etc.).
+    comments:
+    - Use this slot when the value of the property is a controlled vocabulary term
+      rather than a numeric or free-text value. For example, ENVO:00002297 for "desert
+      ecosystem" or PATO:0001199 for "dry".
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: uriorcurie
+  has_datetime_value:
+    name: has_datetime_value
+    description: Date-time value for the property in ISO-8601 format.
+    comments:
+    - Use this slot for temporal properties. The value should follow ISO-8601 format
+      (e.g., "2025-06-12T14:30:00Z").
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: string
   processing_institution_workflow_metadata:
     name: processing_institution_workflow_metadata
     description: Information about how workflow results were generated when the processing
@@ -13524,9 +13641,11 @@ slots:
       occurrence:
         tag: occurrence
         value: m
-    description: Any other measurement performed or parameter collected, that is not
-      listed here
+    description: Structured miscellaneous property assertions for this Biosample.
+      Use when a value cannot cleanly fit an existing, policy-governed slot.
     title: miscellaneous parameter
+    todos:
+    - This slot should not be available in the submission portal.
     examples:
     - value: Bicarbonate ion concentration;2075 micromole per kilogram
     from_schema: https://w3id.org/nmdc/nmdc
@@ -13535,7 +13654,7 @@ slots:
     is_a: core field
     string_serialization: '{text};{float} {unit}'
     slot_uri: MIXS:0000752
-    range: TextValue
+    range: PropertyAssertion
     multivalued: true
     inlined_as_list: true
   n_alkanes:
@@ -19756,6 +19875,11 @@ slots:
     - For example, low read count from a sequencer, malformed fastq files, etc.
     from_schema: https://w3id.org/nmdc/nmdc
     range: FailureWhatEnum
+  protocol_for:
+    name: protocol_for
+    description: The type of planned process that the protocol describes.
+    from_schema: https://w3id.org/nmdc/nmdc
+    range: ProtocolForEnum
   emsl_store_temp:
     name: emsl_store_temp
     description: The temperature at which the sample should be stored upon delivery
@@ -22608,6 +22732,8 @@ classes:
       has_unit:
         name: has_unit
         description: The unit of the quantity
+        range: UnitEnum
+        required: true
       has_numeric_value:
         name: has_numeric_value
         description: The number part of the quantity
@@ -22720,6 +22846,72 @@ classes:
         name: longitude
         required: true
     class_uri: nmdc:GeolocationValue
+  PropertyAssertion:
+    name: PropertyAssertion
+    description: A structured record of data that doesn't fit nicely within the constraints
+      of other NMDC AttributeValues. Uses primitive ranges only.
+    comments:
+    - This class enables flexible metadata capture for properties that don't align
+      with existing, policy-governed slots in NMDC schema.
+    - 'Interoperability note: This approach is aligned with the BERtron schema''s
+      ''properties'' slot pattern (see https://github.com/ber-data/bertron-schema),
+      which uses any_of to support both TextValue and QuantityValue ranges. NMDC''s
+      PropertyAssertion provides a more granular approach by using primitive types
+      with optional semantic annotations, enabling better validation while maintaining
+      flexibility for diverse metadata types.'
+    - PropertyAssertion supports both categorical values (via has_value_term_id) and
+      numeric values (via has_numeric_value with optional min/max ranges), along with
+      temporal (has_datetime_value) and boolean (has_boolean_value) data types.
+    examples:
+    - description: Data provided from submission that doesn't conform to required
+        abs_air_humidity units
+      object:
+        type: nmdc:PropertyAssertion
+        has_raw_value: 50 kPa
+        has_attribute_id: MIXS:0000122
+        has_attribute_label: absolute air humidity
+        has_numeric_value: 50
+        has_unit: kPa
+    - description: Data provided from submission that doesn't conform to required
+        UCUM unit
+      object:
+        type: nmdc:PropertyAssertion
+        has_raw_value: 5.5 mL/L
+        has_attribute_id: MIXS:0000119
+        has_attribute_label: dissolved oxygen
+        has_numeric_value: 5.5
+        has_unit: mL/L
+    - description: Unit provided is invalid for UCUM and standard
+      object:
+        type: nmdc:PropertyAssertion
+        has_raw_value: 250 W/m2
+        has_attribute_id: MIXS:0000112
+        has_attribute_label: solar irradiance
+        has_numeric_value: 250
+        has_unit: W/m2
+    from_schema: https://w3id.org/nmdc/nmdc
+    is_a: AttributeValue
+    slots:
+    - has_attribute_label
+    - has_attribute_id
+    - has_quantity_kind_id
+    - has_value_term_id
+    - has_boolean_value
+    - has_datetime_value
+    - has_numeric_value
+    - has_minimum_numeric_value
+    - has_maximum_numeric_value
+    - has_unit
+    slot_usage:
+      has_raw_value:
+        name: has_raw_value
+        description: Original contributor string representation (unparsed)
+        required: true
+      has_unit:
+        name: has_unit
+        description: UCUM unit code (required only when numeric value is present)
+        required: false
+    class_uri: nmdc:PropertyAssertion
   NamedThing:
     name: NamedThing
     description: a databased entity or concept/class
@@ -22824,7 +23016,8 @@ classes:
   Instrument:
     name: Instrument
     description: A material entity that is designed to perform a function in a scientific
-      investigation, but is not a reagent.
+      investigation, but is not a reagent. This class models the make and model of
+      the instrument, not the specific instance of the instrument.
     from_schema: https://w3id.org/nmdc/nmdc
     aliases:
     - device
@@ -22842,6 +23035,13 @@ classes:
           syntax: '{id_nmdc_prefix}:inst-{id_shoulder}-{id_blade}$'
           interpolated: true
     class_uri: nmdc:Instrument
+    unique_keys:
+      main:
+        unique_key_name: main
+        unique_key_slots:
+        - vendor
+        - model
+        description: A unique instrument is defined by its vendor and model.
   PlannedProcess:
     name: PlannedProcess
     title: Planned Process
@@ -22867,6 +23067,8 @@ classes:
     - name
     - type
     - description
+    - protocol_for
+    - analysis_type
     class_uri: nmdc:Protocol
   CreditAssociation:
     name: CreditAssociation

nmdc_schema/nmdc_schema_validation_plugin.py

@@ -0,0 +1,103 @@
+from typing import Any, Optional, Iterator, Union
+
+from linkml.validator.plugins import ValidationPlugin
+from linkml.validator.report import ValidationResult, Severity
+from linkml.validator.validation_context import ValidationContext
+from linkml_runtime import SchemaView
+
+
+def _yield_quantity_value_objects(data: Any, path: Optional[list[Union[str, int]]] = None):
+    """Recursively yield QuantityValue objects from data."""
+    if path is None:
+        path = []
+    if isinstance(data, dict):
+        if data.get("type") == "nmdc:QuantityValue":
+            yield path, data
+        else:
+            # Recursively search nested dictionaries
+            for key, value in data.items():
+                yield from _yield_quantity_value_objects(value, path + [key])
+    elif isinstance(data, list):
+        # Handle lists of objects
+        for i, item in enumerate(data):
+            yield from _yield_quantity_value_objects(item, path + [i])
+
+
+class NmdcSchemaValidationPlugin(ValidationPlugin):
+    """A validation plugin which validates instances using NMDC-specific validation logic.
+
+    This plugin is designed to be used as a part of LinkML's validation framework and in conjunction
+    with the `JsonSchemaValidationPlugin` provided by LinkML. This plugin performs the following
+    additional checks:
+
+      1. Ensure that values for slots with range `QuantityValue` have a `unit` property that is in
+         agreement with the `storage_unit` annotation on the slot
+    """
+
+    def __init__(self, *args, **kwargs) -> None:
+        super().__init__(*args, **kwargs)
+        self._slot_storage_units_cache = {}
+
+    def _slot_storage_units(self, schema_view: SchemaView, slot_name: str) -> Optional[list[str]]:
+        """Get allowed storage_units for a slot."""
+        if slot_name in self._slot_storage_units_cache:
+            return self._slot_storage_units_cache[slot_name]
+
+        slot = schema_view.get_slot(slot_name)
+        if not slot or not slot.annotations:
+            self._slot_storage_units_cache[slot_name] = None
+            return None
+
+        storage_units = None
+        if "storage_units" in slot.annotations:
+            annotation_obj = slot.annotations["storage_units"]
+            if annotation_obj and hasattr(annotation_obj, "value"):
+                # Split on pipes for multiple units
+                storage_units = str(annotation_obj.value).split("|")
+
+        self._slot_storage_units_cache[slot_name] = storage_units
+        return storage_units
+
+    def process(self, instance: Any, context: ValidationContext) -> Iterator[ValidationResult]:
+        """Perform NMDC-specific schema validation on the provided instance
+
+        :param instance: The instance to validate
+        :param context: The validation context which provides a SchemaView artifact
+        :return: Iterator over validation results
+        :rtype: Iterator[ValidationResult]
+        """
+        for data_path, quantity_value in _yield_quantity_value_objects(instance):
+            # Get the `has_unit` property from the QuantityValue instance. If it is missing, yield a
+            # validation error and continue. This is slightly redundant with JSON Schema validation,
+            # but it ensures that we do not attempt further validation on the instance.
+            unit = quantity_value.get("has_unit")
+            str_data_path = '/'.join(str(p) for p in data_path)
+            if unit is None:
+                yield ValidationResult(
+                    type="nmdc-schema validation",
+                    severity=Severity.ERROR,
+                    instance=instance,
+                    instantiates=context.target_class,
+                    message=f"QuantityValue at /{str_data_path} is missing required 'has_unit' property",
+                )
+                continue
+
+            # Find the slot name by looking for the last string in the data path. If one cannot be
+            # found, skip further validation because we cannot determine the relevant slot.
+            try:
+                slot_name = next(key for key in reversed(data_path) if isinstance(key, str))
+            except StopIteration:
+                continue
+
+            storage_units = self._slot_storage_units(context.schema_view, slot_name)
+            if storage_units and unit not in storage_units:
+                yield ValidationResult(
+                    type="nmdc-schema validation",
+                    severity=Severity.ERROR,
+                    instance=instance,
+                    instantiates=context.target_class,
+                    message=(
+                        f"QuantityValue at /{str_data_path} has unit '{unit}' which is not allowed for "
+                        f"slot '{slot_name}' (allowed: {', '.join(storage_units)})"
+                    )
+                )

{nmdc_schema-11.12.0rc2.dist-info → nmdc_schema-11.12.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nmdc_schema
-Version: 11.12.0rc2
+Version: 11.12.1
 Summary: Schema resources for the National Microbiome Data Collaborative (NMDC)
 License: MIT
 License-File: LICENSE