nmdc-schema 11.12.0rc1__py3-none-any.whl → 11.12.0rc2__py3-none-any.whl

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Files changed (11) hide show
  1. nmdc_schema/nmdc-pydantic.py +113 -117
  2. nmdc_schema/nmdc.py +5 -8
  3. nmdc_schema/nmdc.schema.json +2 -1
  4. nmdc_schema/nmdc_materialized_patterns.json +113 -143
  5. nmdc_schema/nmdc_materialized_patterns.schema.json +2 -1
  6. nmdc_schema/nmdc_materialized_patterns.yaml +113 -124
  7. {nmdc_schema-11.12.0rc1.dist-info → nmdc_schema-11.12.0rc2.dist-info}/METADATA +1 -1
  8. {nmdc_schema-11.12.0rc1.dist-info → nmdc_schema-11.12.0rc2.dist-info}/RECORD +11 -11
  9. {nmdc_schema-11.12.0rc1.dist-info → nmdc_schema-11.12.0rc2.dist-info}/WHEEL +0 -0
  10. {nmdc_schema-11.12.0rc1.dist-info → nmdc_schema-11.12.0rc2.dist-info}/entry_points.txt +0 -0
  11. {nmdc_schema-11.12.0rc1.dist-info → nmdc_schema-11.12.0rc2.dist-info}/licenses/LICENSE +0 -0
nmdc_schema/nmdc-pydantic.py CHANGED
@@ -27,7 +27,7 @@ from pydantic import (
27
27
 
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  metamodel_version = "None"
30
- version = "11.12.0rc1"
30
+ version = "11.12.0rc2"
31
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33
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  class ConfiguredBaseModel(BaseModel):
@@ -1108,6 +1108,10 @@ class UnitEnum(str, Enum):
1108
1108
  """
1109
1109
  The Unified Code for Units of Measure (UCUM) representation of atmosphere.
1110
1110
  """
1111
+ V = "V"
1112
+ """
1113
+ The Unified Code for Units of Measure (UCUM) representation of volt.
1114
+ """
1111
1115
  mV = "mV"
1112
1116
  """
1113
1117
  The Unified Code for Units of Measure (UCUM) representation of millivolt.
@@ -5643,8 +5647,6 @@ class Biosample(Sample):
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5647
  'has been submitted '
5644
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  'to NMDC',
5645
5649
  'name': 'alternative_identifiers'},
5646
- 'annual_precpt': {'examples': [{'value': '8.94 inch'}],
5647
- 'name': 'annual_precpt'},
5648
5650
  'associated_studies': {'name': 'associated_studies',
5649
5651
  'pattern': '^(nmdc):sty-([0-9][a-z]{0,6}[0-9])-([A-Za-z0-9]{1,})$',
5650
5652
  'range': 'Study',
@@ -5844,8 +5846,6 @@ class Biosample(Sample):
5844
5846
  '(September, October, November) '
5845
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  'and winter (December, January, '
5846
5848
  'February).'],
5847
- 'examples': [{'value': '0.4 inch'},
5848
- {'value': '10.16 mm'}],
5849
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  'name': 'season_precpt',
5850
5850
  'notes': ['mean and average are the same '
5851
5851
  'thing, but it seems like bad '
@@ -5884,7 +5884,6 @@ class Biosample(Sample):
5884
5884
  'exposure that will influence '
5885
5885
  'soil temperature and '
5886
5886
  'evapotranspiration.',
5887
- 'examples': [{'value': '35'}],
5888
5887
  'name': 'slope_aspect'},
5889
5888
  'slope_gradient': {'examples': [{'value': '10%'},
5890
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  {'value': '10 %'},
@@ -5933,12 +5932,9 @@ class Biosample(Sample):
5933
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  'tot_nitro_cont_meth': {'examples': [{'value': 'https://doi.org/10.2134/agronmonogr9.2.c32'},
5934
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  {'value': 'https://acsess.onlinelibrary.wiley.com/doi/full/10.2136/sssaj2009.0389?casa_token=bm0pYIUdNMgAAAAA%3AOWVRR0STHaOe-afTcTdxn5m1hM8n2ltM0wY-b1iYpYdD9dhwppk5j3LvC2IO5yhOIvyLVeQz4NZRCZo'}],
5935
5934
  'name': 'tot_nitro_cont_meth'},
5936
- 'tot_nitro_content': {'examples': [{'value': '5 mg N/ L'}],
5937
- 'name': 'tot_nitro_content'},
5938
5935
  'tot_org_c_meth': {'examples': [{'value': 'https://doi.org/10.1080/07352680902776556'}],
5939
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  'name': 'tot_org_c_meth'},
5940
- 'tot_org_carb': {'examples': [{'value': '5 mg N/ L'}],
5941
- 'name': 'tot_org_carb',
5937
+ 'tot_org_carb': {'name': 'tot_org_carb',
5942
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  'todos': ['check description. How are they '
5943
5939
  'different?']},
5944
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  'water_cont_soil_meth': {'comments': ['Required if providing '
@@ -6096,7 +6092,7 @@ class Biosample(Sample):
6096
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  'storage_units': {'tag': 'storage_units',
6097
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  'value': '[lb_av]|g/g|kg|kg/kg'}},
6098
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  'domain_of': ['Biosample'],
6099
- 'examples': [{'value': '9 gram per gram'}],
6095
+ 'examples': [{'value': '9 g/g'}],
6100
6096
  'is_a': 'core field',
6101
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  'slot_uri': 'MIXS:0000122'} })
6102
6098
  add_recov_method: Optional[TextValue] = Field(default=None, title="secondary and tertiary recovery methods and start date", description="""Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed for increase of hydrocarbon recovery from resource and start date for each one of them. If \"other\" is specified, please propose entry in \"additional info\" field""", json_schema_extra = { "linkml_meta": {'alias': 'add_recov_method',
@@ -6182,7 +6178,7 @@ class Biosample(Sample):
6182
6178
  'value': 'degree Celsius'},
6183
6179
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
6184
6180
  'domain_of': ['Biosample'],
6185
- 'examples': [{'value': '20 degree Celsius'}],
6181
+ 'examples': [{'value': '20 Cel'}],
6186
6182
  'is_a': 'core field',
6187
6183
  'slot_uri': 'MIXS:0000124'} })
6188
6184
  air_temp_regm: Optional[list[TextValue]] = Field(default=None, title="air temperature regimen", description="""Information about treatment involving an exposure to varying temperatures; should include the temperature, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include different temperature regimens""", json_schema_extra = { "linkml_meta": {'alias': 'air_temp_regm',
@@ -6242,7 +6238,7 @@ class Biosample(Sample):
6242
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  'storage_units': {'tag': 'storage_units',
6243
6239
  'value': 'meq/L|mg/L'}},
6244
6240
  'domain_of': ['Biosample'],
6245
- 'examples': [{'value': '50 milligram per liter'}],
6241
+ 'examples': [{'value': '50 mg/L'}],
6246
6242
  'is_a': 'core field',
6247
6243
  'slot_uri': 'MIXS:0000421'} })
6248
6244
  alkalinity_method: Optional[TextValue] = Field(default=None, title="alkalinity method", description="""Method used for alkalinity measurement""", json_schema_extra = { "linkml_meta": {'alias': 'alkalinity_method',
@@ -6264,7 +6260,7 @@ class Biosample(Sample):
6264
6260
  'value': 'mole per liter'},
6265
6261
  'storage_units': {'tag': 'storage_units', 'value': 'mol/L'}},
6266
6262
  'domain_of': ['Biosample'],
6267
- 'examples': [{'value': '0.005 mole per liter'}],
6263
+ 'examples': [{'value': '0.005 mol/L'}],
6268
6264
  'is_a': 'core field',
6269
6265
  'slot_uri': 'MIXS:0000490'} })
6270
6266
  alt: Optional[QuantityValue] = Field(default=None, title="altitude", description="""Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air""", json_schema_extra = { "linkml_meta": {'alias': 'alt',
@@ -6273,7 +6269,7 @@ class Biosample(Sample):
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  'value': 'measurement value'},
6274
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  'storage_units': {'tag': 'storage_units', 'value': 'm'}},
6275
6271
  'domain_of': ['Biosample'],
6276
- 'examples': [{'value': '100 meter'}],
6272
+ 'examples': [{'value': '100 m'}],
6277
6273
  'is_a': 'environment field',
6278
6274
  'slot_uri': 'MIXS:0000094'} })
6279
6275
  aminopept_act: Optional[QuantityValue] = Field(default=None, title="aminopeptidase activity", description="""Measurement of aminopeptidase activity""", json_schema_extra = { "linkml_meta": {'alias': 'aminopept_act',
@@ -6285,7 +6281,7 @@ class Biosample(Sample):
6285
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  'value': 'mole per liter per hour'},
6286
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  'storage_units': {'tag': 'storage_units', 'value': 'mol/L/h'}},
6287
6283
  'domain_of': ['Biosample'],
6288
- 'examples': [{'value': '0.269 mole per liter per hour'}],
6284
+ 'examples': [{'value': '0.269 mol/L/h'}],
6289
6285
  'is_a': 'core field',
6290
6286
  'slot_uri': 'MIXS:0000172'} })
6291
6287
  ammonium: Optional[QuantityValue] = Field(default=None, title="ammonium", description="""Concentration of ammonium in the sample""", json_schema_extra = { "linkml_meta": {'alias': 'ammonium',
@@ -6299,7 +6295,7 @@ class Biosample(Sample):
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6295
  'storage_units': {'tag': 'storage_units',
6300
6296
  'value': '[ppm]|mg/L|umol/L'}},
6301
6297
  'domain_of': ['Biosample'],
6302
- 'examples': [{'value': '1.5 milligram per liter'}],
6298
+ 'examples': [{'value': '1.5 mg/L'}],
6303
6299
  'is_a': 'core field',
6304
6300
  'slot_uri': 'MIXS:0000427'} })
6305
6301
  amount_light: Optional[QuantityValue] = Field(default=None, title="amount of light", description="""The unit of illuminance and luminous emittance, measuring luminous flux per unit area""", json_schema_extra = { "linkml_meta": {'alias': 'amount_light',
@@ -6334,7 +6330,7 @@ class Biosample(Sample):
6334
6330
  'value': 'millimeter'},
6335
6331
  'storage_units': {'tag': 'storage_units', 'value': 'mm'}},
6336
6332
  'domain_of': ['Biosample'],
6337
- 'examples': [{'value': '8.94 inch'}],
6333
+ 'examples': [{'value': '225 mm'}],
6338
6334
  'is_a': 'core field',
6339
6335
  'slot_uri': 'MIXS:0000644'} })
6340
6336
  annual_temp: Optional[QuantityValue] = Field(default=None, title="mean annual temperature", description="""Mean annual temperature""", json_schema_extra = { "linkml_meta": {'alias': 'annual_temp',
@@ -6346,7 +6342,7 @@ class Biosample(Sample):
6346
6342
  'value': 'degree Celsius'},
6347
6343
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
6348
6344
  'domain_of': ['Biosample'],
6349
- 'examples': [{'value': '12.5 degree Celsius'}],
6345
+ 'examples': [{'value': '12.5 Cel'}],
6350
6346
  'is_a': 'core field',
6351
6347
  'slot_uri': 'MIXS:0000642'} })
6352
6348
  antibiotic_regm: Optional[list[TextValue]] = Field(default=None, title="antibiotic regimen", description="""Information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple antibiotic regimens""", json_schema_extra = { "linkml_meta": {'alias': 'antibiotic_regm',
@@ -6431,7 +6427,7 @@ class Biosample(Sample):
6431
6427
  'value': 'degree Celsius'},
6432
6428
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
6433
6429
  'domain_of': ['Biosample'],
6434
- 'examples': [{'value': '25.5 degree Celsius'}],
6430
+ 'examples': [{'value': '25.5 Cel'}],
6435
6431
  'is_a': 'core field',
6436
6432
  'slot_uri': 'MIXS:0000141'} })
6437
6433
  avg_occup: Optional[TextValue] = Field(default=None, title="average daily occupancy", description="""Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room.""", json_schema_extra = { "linkml_meta": {'alias': 'avg_occup',
@@ -6451,7 +6447,7 @@ class Biosample(Sample):
6451
6447
  'value': 'degree Celsius'},
6452
6448
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
6453
6449
  'domain_of': ['Biosample'],
6454
- 'examples': [{'value': '12.5 degree Celsius'}],
6450
+ 'examples': [{'value': '12.5 Cel'}],
6455
6451
  'is_a': 'core field',
6456
6452
  'slot_uri': 'MIXS:0000142'} })
6457
6453
  bac_prod: Optional[QuantityValue] = Field(default=None, title="bacterial production", description="""Bacterial production in the water column measured by isotope uptake""", json_schema_extra = { "linkml_meta": {'alias': 'bac_prod',
@@ -6464,7 +6460,7 @@ class Biosample(Sample):
6464
6460
  'day'},
6465
6461
  'storage_units': {'tag': 'storage_units', 'value': 'mg/m3/d'}},
6466
6462
  'domain_of': ['Biosample'],
6467
- 'examples': [{'value': '5 milligram per cubic meter per day'}],
6463
+ 'examples': [{'value': '5 mg/m3/d'}],
6468
6464
  'is_a': 'core field',
6469
6465
  'slot_uri': 'MIXS:0000683'} })
6470
6466
  bac_resp: Optional[QuantityValue] = Field(default=None, title="bacterial respiration", description="""Measurement of bacterial respiration in the water column""", json_schema_extra = { "linkml_meta": {'alias': 'bac_resp',
@@ -6479,7 +6475,7 @@ class Biosample(Sample):
6479
6475
  'storage_units': {'tag': 'storage_units',
6480
6476
  'value': 'mg/m3/d|umol/L/h'}},
6481
6477
  'domain_of': ['Biosample'],
6482
- 'examples': [{'value': '300 micromole oxygen per liter per hour'}],
6478
+ 'examples': [{'value': '300 umol/L/h'}],
6483
6479
  'is_a': 'core field',
6484
6480
  'slot_uri': 'MIXS:0000684'} })
6485
6481
  bacteria_carb_prod: Optional[QuantityValue] = Field(default=None, title="bacterial carbon production", description="""Measurement of bacterial carbon production""", json_schema_extra = { "linkml_meta": {'alias': 'bacteria_carb_prod',
@@ -6491,7 +6487,7 @@ class Biosample(Sample):
6491
6487
  'value': 'nanogram per hour'},
6492
6488
  'storage_units': {'tag': 'storage_units', 'value': 'ng/h'}},
6493
6489
  'domain_of': ['Biosample'],
6494
- 'examples': [{'value': '2.53 microgram per liter per hour'}],
6490
+ 'examples': [{'value': '50 ng/h'}],
6495
6491
  'is_a': 'core field',
6496
6492
  'slot_uri': 'MIXS:0000173'} })
6497
6493
  barometric_press: Optional[QuantityValue] = Field(default=None, title="barometric pressure", description="""Force per unit area exerted against a surface by the weight of air above that surface""", json_schema_extra = { "linkml_meta": {'alias': 'barometric_press',
@@ -6503,7 +6499,7 @@ class Biosample(Sample):
6503
6499
  'value': 'millibar'},
6504
6500
  'storage_units': {'tag': 'storage_units', 'value': 'mbar'}},
6505
6501
  'domain_of': ['Biosample'],
6506
- 'examples': [{'value': '5 millibar'}],
6502
+ 'examples': [{'value': '1013 mbar'}],
6507
6503
  'is_a': 'core field',
6508
6504
  'slot_uri': 'MIXS:0000096'} })
6509
6505
  basin: Optional[TextValue] = Field(default=None, title="basin name", description="""Name of the basin (e.g. Campos)""", json_schema_extra = { "linkml_meta": {'alias': 'basin',
@@ -6631,7 +6627,7 @@ class Biosample(Sample):
6631
6627
  'storage_units': {'tag': 'storage_units',
6632
6628
  'value': 'ug/L|ug/g'}},
6633
6629
  'domain_of': ['Biosample'],
6634
- 'examples': [{'value': '14 microgram per liter'}],
6630
+ 'examples': [{'value': '14 ug/L'}],
6635
6631
  'is_a': 'core field',
6636
6632
  'slot_uri': 'MIXS:0000175'} })
6637
6633
  blood_press_diast: Optional[QuantityValue] = Field(default=None, title="host blood pressure diastolic", description="""Resting diastolic blood pressure, measured as mm mercury""", json_schema_extra = { "linkml_meta": {'alias': 'blood_press_diast',
@@ -6667,7 +6663,7 @@ class Biosample(Sample):
6667
6663
  'value': 'parts per million'},
6668
6664
  'storage_units': {'tag': 'storage_units', 'value': '[ppm]'}},
6669
6665
  'domain_of': ['Biosample'],
6670
- 'examples': [{'value': '0.05 parts per million'}],
6666
+ 'examples': [{'value': '0.05 [ppm]'}],
6671
6667
  'is_a': 'core field',
6672
6668
  'slot_uri': 'MIXS:0000176'} })
6673
6669
  build_docs: Optional[BuildDocsEnum] = Field(default=None, title="design, construction, and operation documents", description="""The building design, construction and operation documents""", json_schema_extra = { "linkml_meta": {'alias': 'build_docs',
@@ -6704,7 +6700,7 @@ class Biosample(Sample):
6704
6700
  'preferred_unit': {'tag': 'preferred_unit', 'value': 'year'},
6705
6701
  'storage_units': {'tag': 'storage_units', 'value': 'a'}},
6706
6702
  'domain_of': ['Biosample'],
6707
- 'examples': [{'value': '15'}],
6703
+ 'examples': [{'value': '15 a'}],
6708
6704
  'is_a': 'core field',
6709
6705
  'slot_uri': 'MIXS:0000145'} })
6710
6706
  built_struc_set: Optional[TextValue] = Field(default=None, title="built structure setting", description="""The characterization of the location of the built structure as high or low human density""", json_schema_extra = { "linkml_meta": {'alias': 'built_struc_set',
@@ -6738,7 +6734,7 @@ class Biosample(Sample):
6738
6734
  'storage_units': {'tag': 'storage_units',
6739
6735
  'value': '[ppm]|mg/L|umol/L|mg/kg'}},
6740
6736
  'domain_of': ['Biosample'],
6741
- 'examples': [{'value': '0.2 micromole per liter'}],
6737
+ 'examples': [{'value': '0.2 umol/L'}],
6742
6738
  'is_a': 'core field',
6743
6739
  'slot_uri': 'MIXS:0000432'} })
6744
6740
  carb_dioxide: Optional[QuantityValue] = Field(default=None, title="carbon dioxide", description="""Carbon dioxide (gas) amount or concentration at the time of sampling""", json_schema_extra = { "linkml_meta": {'alias': 'carb_dioxide',
@@ -6752,7 +6748,7 @@ class Biosample(Sample):
6752
6748
  'storage_units': {'tag': 'storage_units',
6753
6749
  'value': '[ppm]|umol/L'}},
6754
6750
  'domain_of': ['Biosample'],
6755
- 'examples': [{'value': '410 parts per million'}],
6751
+ 'examples': [{'value': '410 [ppm]'}],
6756
6752
  'is_a': 'core field',
6757
6753
  'slot_uri': 'MIXS:0000097'} })
6758
6754
  carb_monoxide: Optional[QuantityValue] = Field(default=None, title="carbon monoxide", description="""Carbon monoxide (gas) amount or concentration at the time of sampling""", json_schema_extra = { "linkml_meta": {'alias': 'carb_monoxide',
@@ -6766,7 +6762,7 @@ class Biosample(Sample):
6766
6762
  'storage_units': {'tag': 'storage_units',
6767
6763
  'value': '[ppm]|umol/L'}},
6768
6764
  'domain_of': ['Biosample'],
6769
- 'examples': [{'value': '0.1 parts per million'}],
6765
+ 'examples': [{'value': '0.1 [ppm]'}],
6770
6766
  'is_a': 'core field',
6771
6767
  'slot_uri': 'MIXS:0000098'} })
6772
6768
  carb_nitro_ratio: Optional[QuantityValue] = Field(default=None, title="carbon/nitrogen ratio", description="""Ratio of amount or concentrations of carbon to nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'carb_nitro_ratio',
@@ -6788,7 +6784,7 @@ class Biosample(Sample):
6788
6784
  'value': 'square meter'},
6789
6785
  'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
6790
6786
  'domain_of': ['Biosample'],
6791
- 'examples': [{'value': '25 square meter'}],
6787
+ 'examples': [{'value': '25 m2'}],
6792
6788
  'is_a': 'core field',
6793
6789
  'slot_uri': 'MIXS:0000148'} })
6794
6790
  ceil_cond: Optional[CeilCondEnum] = Field(default=None, title="ceiling condition", description="""The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas""", json_schema_extra = { "linkml_meta": {'alias': 'ceil_cond',
@@ -6933,7 +6929,7 @@ class Biosample(Sample):
6933
6929
  'storage_units': {'tag': 'storage_units',
6934
6930
  'value': '[ppm]|mg/L'}},
6935
6931
  'domain_of': ['Biosample'],
6936
- 'examples': [{'value': '5000 milligram per liter'}],
6932
+ 'examples': [{'value': '5000 mg/L'}],
6937
6933
  'is_a': 'core field',
6938
6934
  'slot_uri': 'MIXS:0000429'} })
6939
6935
  chlorophyll: Optional[QuantityValue] = Field(default=None, title="chlorophyll", description="""Concentration of chlorophyll""", json_schema_extra = { "linkml_meta": {'alias': 'chlorophyll',
@@ -6947,7 +6943,7 @@ class Biosample(Sample):
6947
6943
  'storage_units': {'tag': 'storage_units',
6948
6944
  'value': 'mg/m3|ug/L'}},
6949
6945
  'domain_of': ['Biosample'],
6950
- 'examples': [{'value': '5 milligram per cubic meter'}],
6946
+ 'examples': [{'value': '5 mg/m3'}],
6951
6947
  'is_a': 'core field',
6952
6948
  'slot_uri': 'MIXS:0000177'} })
6953
6949
  climate_environment: Optional[list[TextValue]] = Field(default=None, title="climate environment", description="""Treatment involving an exposure to a particular climate; treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple climates""", json_schema_extra = { "linkml_meta": {'alias': 'climate_environment',
@@ -6984,7 +6980,7 @@ class Biosample(Sample):
6984
6980
  'storage_units': {'tag': 'storage_units',
6985
6981
  'value': 'mS/cm|uS/cm'}},
6986
6982
  'domain_of': ['Biosample'],
6987
- 'examples': [{'value': '10 milliSiemens per centimeter'}],
6983
+ 'examples': [{'value': '10 uS/cm'}],
6988
6984
  'is_a': 'core field',
6989
6985
  'slot_uri': 'MIXS:0000692'} })
6990
6986
  cool_syst_id: Optional[TextValue] = Field(default=None, title="cooling system identifier", description="""The cooling system identifier""", json_schema_extra = { "linkml_meta": {'alias': 'cool_syst_id',
@@ -7075,7 +7071,7 @@ class Biosample(Sample):
7075
7071
  'storage_units': {'tag': 'storage_units',
7076
7072
  'value': 'g/cm3|g/m3|kg/m3'}},
7077
7073
  'domain_of': ['Biosample'],
7078
- 'examples': [{'value': '1000 kilogram per cubic meter'}],
7074
+ 'examples': [{'value': '1000 kg/m3'}],
7079
7075
  'is_a': 'core field',
7080
7076
  'slot_uri': 'MIXS:0000435'} })
7081
7077
  depos_env: Optional[DeposEnvEnum] = Field(default=None, title="depositional environment", description="""Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment). If \"other\" is specified, please propose entry in \"additional info\" field""", json_schema_extra = { "linkml_meta": {'alias': 'depos_env',
@@ -7093,7 +7089,7 @@ class Biosample(Sample):
7093
7089
  'value': 'measurement value'},
7094
7090
  'storage_units': {'tag': 'storage_units', 'value': 'm'}},
7095
7091
  'domain_of': ['Biosample'],
7096
- 'examples': [{'value': '10 meter'}],
7092
+ 'examples': [{'value': '10 m'}],
7097
7093
  'is_a': 'environment field',
7098
7094
  'slot_uri': 'MIXS:0000018'} })
7099
7095
  dew_point: Optional[QuantityValue] = Field(default=None, title="dew point", description="""The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water.""", json_schema_extra = { "linkml_meta": {'alias': 'dew_point',
@@ -7105,7 +7101,7 @@ class Biosample(Sample):
7105
7101
  'value': 'degree Celsius'},
7106
7102
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
7107
7103
  'domain_of': ['Biosample'],
7108
- 'examples': [{'value': '22 degree Celsius'}],
7104
+ 'examples': [{'value': '22 Cel'}],
7109
7105
  'is_a': 'core field',
7110
7106
  'slot_uri': 'MIXS:0000129'} })
7111
7107
  diether_lipids: Optional[list[TextValue]] = Field(default=None, title="diether lipids", description="""Concentration of diether lipids; can include multiple types of diether lipids""", json_schema_extra = { "linkml_meta": {'alias': 'diether_lipids',
@@ -7132,7 +7128,7 @@ class Biosample(Sample):
7132
7128
  'storage_units': {'tag': 'storage_units',
7133
7129
  'value': 'mg/L|umol/L'}},
7134
7130
  'domain_of': ['Biosample'],
7135
- 'examples': [{'value': '5 milligram per liter'}],
7131
+ 'examples': [{'value': '5 mg/L'}],
7136
7132
  'is_a': 'core field',
7137
7133
  'slot_uri': 'MIXS:0000436'} })
7138
7134
  diss_hydrogen: Optional[QuantityValue] = Field(default=None, title="dissolved hydrogen", description="""Concentration of dissolved hydrogen""", json_schema_extra = { "linkml_meta": {'alias': 'diss_hydrogen',
@@ -7144,7 +7140,7 @@ class Biosample(Sample):
7144
7140
  'value': 'micromole per liter'},
7145
7141
  'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
7146
7142
  'domain_of': ['Biosample'],
7147
- 'examples': [{'value': '0.3 micromole per liter'}],
7143
+ 'examples': [{'value': '0.3 umol/L'}],
7148
7144
  'is_a': 'core field',
7149
7145
  'slot_uri': 'MIXS:0000179'} })
7150
7146
  diss_inorg_carb: Optional[QuantityValue] = Field(default=None, title="dissolved inorganic carbon", description="""Dissolved inorganic carbon concentration in the sample, typically measured after filtering the sample using a 0.45 micrometer filter""", json_schema_extra = { "linkml_meta": {'alias': 'diss_inorg_carb',
@@ -7156,9 +7152,9 @@ class Biosample(Sample):
7156
7152
  'value': 'microgram per liter, milligram '
7157
7153
  'per liter, parts per million'},
7158
7154
  'storage_units': {'tag': 'storage_units',
7159
- 'value': '[ppm]|mg/L|ug/L'}},
7155
+ 'value': '[ppm]|mg/L|ug/L|umol/kg'}},
7160
7156
  'domain_of': ['Biosample'],
7161
- 'examples': [{'value': '2059 micromole per kilogram'}],
7157
+ 'examples': [{'value': '2059 umol/kg'}],
7162
7158
  'is_a': 'core field',
7163
7159
  'slot_uri': 'MIXS:0000434'} })
7164
7160
  diss_inorg_nitro: Optional[QuantityValue] = Field(default=None, title="dissolved inorganic nitrogen", description="""Concentration of dissolved inorganic nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'diss_inorg_nitro',
@@ -7172,7 +7168,7 @@ class Biosample(Sample):
7172
7168
  'storage_units': {'tag': 'storage_units',
7173
7169
  'value': 'ug/L|umol/L|mg/L'}},
7174
7170
  'domain_of': ['Biosample'],
7175
- 'examples': [{'value': '761 micromole per liter'}],
7171
+ 'examples': [{'value': '761 umol/L'}],
7176
7172
  'is_a': 'core field',
7177
7173
  'slot_uri': 'MIXS:0000698'} })
7178
7174
  diss_inorg_phosp: Optional[QuantityValue] = Field(default=None, title="dissolved inorganic phosphorus", description="""Concentration of dissolved inorganic phosphorus in the sample""", json_schema_extra = { "linkml_meta": {'alias': 'diss_inorg_phosp',
@@ -7184,9 +7180,9 @@ class Biosample(Sample):
7184
7180
  'value': 'microgram per liter, milligram '
7185
7181
  'per liter, parts per million'},
7186
7182
  'storage_units': {'tag': 'storage_units',
7187
- 'value': '[ppm]|mg/L|ug/L'}},
7183
+ 'value': '[ppm]|mg/L|ug/L|umol/L'}},
7188
7184
  'domain_of': ['Biosample'],
7189
- 'examples': [{'value': '56.5 micromole per liter'}],
7185
+ 'examples': [{'value': '56.5 umol/L'}],
7190
7186
  'is_a': 'core field',
7191
7187
  'slot_uri': 'MIXS:0000106'} })
7192
7188
  diss_iron: Optional[QuantityValue] = Field(default=None, title="dissolved iron", description="""Concentration of dissolved iron in the sample""", json_schema_extra = { "linkml_meta": {'alias': 'diss_iron',
@@ -7212,7 +7208,7 @@ class Biosample(Sample):
7212
7208
  'storage_units': {'tag': 'storage_units',
7213
7209
  'value': 'mg/L|umol/L|ug/L'}},
7214
7210
  'domain_of': ['Biosample'],
7215
- 'examples': [{'value': '197 micromole per liter'}],
7211
+ 'examples': [{'value': '197 umol/L'}],
7216
7212
  'is_a': 'core field',
7217
7213
  'slot_uri': 'MIXS:0000433'} })
7218
7214
  diss_org_nitro: Optional[QuantityValue] = Field(default=None, title="dissolved organic nitrogen", description="""Dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2""", json_schema_extra = { "linkml_meta": {'alias': 'diss_org_nitro',
@@ -7226,7 +7222,7 @@ class Biosample(Sample):
7226
7222
  'storage_units': {'tag': 'storage_units',
7227
7223
  'value': 'mg/L|ug/L'}},
7228
7224
  'domain_of': ['Biosample'],
7229
- 'examples': [{'value': '0.05 micromole per liter'}],
7225
+ 'examples': [{'value': '0.05 mg/L'}],
7230
7226
  'is_a': 'core field',
7231
7227
  'slot_uri': 'MIXS:0000162'} })
7232
7228
  diss_oxygen: Optional[QuantityValue] = Field(default=None, title="dissolved oxygen", description="""Concentration of dissolved oxygen""", json_schema_extra = { "linkml_meta": {'alias': 'diss_oxygen',
@@ -7240,7 +7236,7 @@ class Biosample(Sample):
7240
7236
  'storage_units': {'tag': 'storage_units',
7241
7237
  'value': 'mg/L|umol/kg|umol/L'}},
7242
7238
  'domain_of': ['Biosample'],
7243
- 'examples': [{'value': '175 micromole per kilogram'}],
7239
+ 'examples': [{'value': '175 umol/L'}],
7244
7240
  'is_a': 'core field',
7245
7241
  'slot_uri': 'MIXS:0000119'} })
7246
7242
  diss_oxygen_fluid: Optional[QuantityValue] = Field(default=None, title="dissolved oxygen in fluids", description="""Concentration of dissolved oxygen in the oil field produced fluids as it contributes to oxgen-corrosion and microbial activity (e.g. Mic).""", json_schema_extra = { "linkml_meta": {'alias': 'diss_oxygen_fluid',
@@ -7320,7 +7316,7 @@ class Biosample(Sample):
7320
7316
  'value': 'square meter'},
7321
7317
  'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
7322
7318
  'domain_of': ['Biosample'],
7323
- 'examples': [{'value': '2.5 square meter'}],
7319
+ 'examples': [{'value': '2.5 m2'}],
7324
7320
  'is_a': 'core field',
7325
7321
  'slot_uri': 'MIXS:0000158'} })
7326
7322
  door_type: Optional[DoorTypeEnum] = Field(default=None, title="door type", description="""The type of door material""", json_schema_extra = { "linkml_meta": {'alias': 'door_type',
@@ -7373,7 +7369,7 @@ class Biosample(Sample):
7373
7369
  'storage_units': {'tag': 'storage_units',
7374
7370
  'value': 'umol/m2/s'}},
7375
7371
  'domain_of': ['Biosample'],
7376
- 'examples': [{'value': '28.71 microEinstein per square meter per second'}],
7372
+ 'examples': [{'value': '28.71 umol/m2/s'}],
7377
7373
  'is_a': 'core field',
7378
7374
  'slot_uri': 'MIXS:0000703'} })
7379
7375
  drainage_class: Optional[DrainageClassEnum] = Field(default=None, title="drainage classification", description="""Drainage classification from a standard system such as the USDA system""", json_schema_extra = { "linkml_meta": {'alias': 'drainage_class',
@@ -7779,9 +7775,9 @@ class Biosample(Sample):
7779
7775
  'preferred_unit': {'tag': 'preferred_unit',
7780
7776
  'value': 'milligram chlorophyll a per '
7781
7777
  'cubic meter, volts'},
7782
- 'storage_units': {'tag': 'storage_units', 'value': 'mg/m3'}},
7778
+ 'storage_units': {'tag': 'storage_units', 'value': 'mg/m3|V'}},
7783
7779
  'domain_of': ['Biosample'],
7784
- 'examples': [{'value': '2.5 volts'}],
7780
+ 'examples': [{'value': '2.5 V'}],
7785
7781
  'is_a': 'core field',
7786
7782
  'slot_uri': 'MIXS:0000704'} })
7787
7783
  freq_clean: Optional[QuantityValue] = Field(default=None, title="frequency of cleaning", description="""The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.""", json_schema_extra = { "linkml_meta": {'alias': 'freq_clean',
@@ -7904,7 +7900,7 @@ class Biosample(Sample):
7904
7900
  'value': 'mol per liter per hour'},
7905
7901
  'storage_units': {'tag': 'storage_units', 'value': 'mol/L/h'}},
7906
7902
  'domain_of': ['Biosample'],
7907
- 'examples': [{'value': '5 mol per liter per hour'}],
7903
+ 'examples': [{'value': '5 mol/L/h'}],
7908
7904
  'is_a': 'core field',
7909
7905
  'slot_uri': 'MIXS:0000137'} })
7910
7906
  gravidity: Optional[TextValue] = Field(default=None, title="gravidity", description="""Whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used""", json_schema_extra = { "linkml_meta": {'alias': 'gravidity',
@@ -8164,7 +8160,7 @@ class Biosample(Sample):
8164
8160
  'value': 'year, day, hour'},
8165
8161
  'storage_units': {'tag': 'storage_units', 'value': 'a|d|h'}},
8166
8162
  'domain_of': ['Biosample'],
8167
- 'examples': [{'value': '10 days'}],
8163
+ 'examples': [{'value': '10 d'}],
8168
8164
  'is_a': 'core field',
8169
8165
  'slot_uri': 'MIXS:0000255'} })
8170
8166
  host_body_habitat: Optional[TextValue] = Field(default=None, title="host body habitat", description="""Original body habitat where the sample was obtained from""", json_schema_extra = { "linkml_meta": {'alias': 'host_body_habitat',
@@ -8206,7 +8202,7 @@ class Biosample(Sample):
8206
8202
  'value': 'degree Celsius'},
8207
8203
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
8208
8204
  'domain_of': ['Biosample'],
8209
- 'examples': [{'value': '15 degree Celsius'}],
8205
+ 'examples': [{'value': '15 Cel'}],
8210
8206
  'is_a': 'core field',
8211
8207
  'slot_uri': 'MIXS:0000274'} })
8212
8208
  host_color: Optional[TextValue] = Field(default=None, title="host color", description="""The color of host""", json_schema_extra = { "linkml_meta": {'alias': 'host_color',
@@ -8247,7 +8243,7 @@ class Biosample(Sample):
8247
8243
  'value': 'kilogram, gram'},
8248
8244
  'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
8249
8245
  'domain_of': ['Biosample'],
8250
- 'examples': [{'value': '500 gram'}],
8246
+ 'examples': [{'value': '500 g'}],
8251
8247
  'is_a': 'core field',
8252
8248
  'slot_uri': 'MIXS:0000257'} })
8253
8249
  host_family_relation: Optional[list[str]] = Field(default=None, title="host family relationship", description="""Familial relationships to other hosts in the same study; can include multiple relationships""", json_schema_extra = { "linkml_meta": {'alias': 'host_family_relation',
@@ -8290,7 +8286,7 @@ class Biosample(Sample):
8290
8286
  'value': 'centimeter, millimeter, meter'},
8291
8287
  'storage_units': {'tag': 'storage_units', 'value': 'cm|m|mm'}},
8292
8288
  'domain_of': ['Biosample'],
8293
- 'examples': [{'value': '0.1 meter'}],
8289
+ 'examples': [{'value': '0.1 m'}],
8294
8290
  'is_a': 'core field',
8295
8291
  'slot_uri': 'MIXS:0000264'} })
8296
8292
  host_last_meal: Optional[list[TextValue]] = Field(default=None, title="host last meal", description="""Content of last meal and time since feeding; can include multiple values""", json_schema_extra = { "linkml_meta": {'alias': 'host_last_meal',
@@ -8312,7 +8308,7 @@ class Biosample(Sample):
8312
8308
  'value': 'centimeter, millimeter, meter'},
8313
8309
  'storage_units': {'tag': 'storage_units', 'value': 'cm|m|mm'}},
8314
8310
  'domain_of': ['Biosample'],
8315
- 'examples': [{'value': '1 meter'}],
8311
+ 'examples': [{'value': '1 m'}],
8316
8312
  'is_a': 'core field',
8317
8313
  'slot_uri': 'MIXS:0000256'} })
8318
8314
  host_life_stage: Optional[TextValue] = Field(default=None, title="host life stage", description="""Description of life stage of host""", json_schema_extra = { "linkml_meta": {'alias': 'host_life_stage',
@@ -8416,7 +8412,7 @@ class Biosample(Sample):
8416
8412
  'value': 'kilogram, gram'},
8417
8413
  'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
8418
8414
  'domain_of': ['Biosample'],
8419
- 'examples': [{'value': '2500 gram'}],
8415
+ 'examples': [{'value': '2500 g'}],
8420
8416
  'is_a': 'core field',
8421
8417
  'slot_uri': 'MIXS:0000263'} })
8422
8418
  host_wet_mass: Optional[QuantityValue] = Field(default=None, title="host wet mass", description="""Measurement of wet mass""", json_schema_extra = { "linkml_meta": {'alias': 'host_wet_mass',
@@ -8428,7 +8424,7 @@ class Biosample(Sample):
8428
8424
  'value': 'kilogram, gram'},
8429
8425
  'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
8430
8426
  'domain_of': ['Biosample'],
8431
- 'examples': [{'value': '1500 gram'}],
8427
+ 'examples': [{'value': '1500 g'}],
8432
8428
  'is_a': 'core field',
8433
8429
  'slot_uri': 'MIXS:0000567'} })
8434
8430
  humidity: Optional[QuantityValue] = Field(default=None, title="humidity", description="""Amount of water vapour in the air, at the time of sampling""", json_schema_extra = { "linkml_meta": {'alias': 'humidity',
@@ -8440,7 +8436,7 @@ class Biosample(Sample):
8440
8436
  'value': 'gram per cubic meter'},
8441
8437
  'storage_units': {'tag': 'storage_units', 'value': 'g/m3|%'}},
8442
8438
  'domain_of': ['Biosample'],
8443
- 'examples': [{'value': '25 gram per cubic meter'}],
8439
+ 'examples': [{'value': '25 g/m3'}],
8444
8440
  'is_a': 'core field',
8445
8441
  'slot_uri': 'MIXS:0000100'} })
8446
8442
  humidity_regm: Optional[list[TextValue]] = Field(default=None, title="humidity regimen", description="""Information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple regimens""", json_schema_extra = { "linkml_meta": {'alias': 'humidity_regm',
@@ -8573,7 +8569,7 @@ class Biosample(Sample):
8573
8569
  'preferred_unit': {'tag': 'preferred_unit', 'value': 'lux'},
8574
8570
  'storage_units': {'tag': 'storage_units', 'value': 'lx'}},
8575
8571
  'domain_of': ['Biosample'],
8576
- 'examples': [{'value': '0.3 lux'}],
8572
+ 'examples': [{'value': '0.3 lx'}],
8577
8573
  'is_a': 'core field',
8578
8574
  'slot_uri': 'MIXS:0000706'} })
8579
8575
  light_regm: Optional[TextValue] = Field(default=None, title="light regimen", description="""Information about treatment(s) involving exposure to light, including both light intensity and quality.""", json_schema_extra = { "linkml_meta": {'alias': 'light_regm',
@@ -8670,7 +8666,7 @@ class Biosample(Sample):
8670
8666
  'storage_units': {'tag': 'storage_units',
8671
8667
  'value': '[ppm]|mg/L|mol/L|umol/kg|mg/kg'}},
8672
8668
  'domain_of': ['Biosample'],
8673
- 'examples': [{'value': '52.8 micromole per kilogram'}],
8669
+ 'examples': [{'value': '52.8 umol/kg'}],
8674
8670
  'is_a': 'core field',
8675
8671
  'slot_uri': 'MIXS:0000431'} })
8676
8672
  max_occup: Optional[QuantityValue] = Field(default=None, title="maximum occupancy", description="""The maximum amount of people allowed in the indoor environment""", json_schema_extra = { "linkml_meta": {'alias': 'max_occup',
@@ -8692,7 +8688,7 @@ class Biosample(Sample):
8692
8688
  'value': 'meter per second'},
8693
8689
  'storage_units': {'tag': 'storage_units', 'value': 'm/s'}},
8694
8690
  'domain_of': ['Biosample'],
8695
- 'examples': [{'value': '0.5 meter per second'}],
8691
+ 'examples': [{'value': '0.5 m/s'}],
8696
8692
  'is_a': 'core field',
8697
8693
  'slot_uri': 'MIXS:0000498'} })
8698
8694
  mean_peak_frict_vel: Optional[QuantityValue] = Field(default=None, title="mean peak friction velocity", description="""Measurement of mean peak friction velocity""", json_schema_extra = { "linkml_meta": {'alias': 'mean_peak_frict_vel',
@@ -8704,7 +8700,7 @@ class Biosample(Sample):
8704
8700
  'value': 'meter per second'},
8705
8701
  'storage_units': {'tag': 'storage_units', 'value': 'm/s'}},
8706
8702
  'domain_of': ['Biosample'],
8707
- 'examples': [{'value': '1 meter per second'}],
8703
+ 'examples': [{'value': '1 m/s'}],
8708
8704
  'is_a': 'core field',
8709
8705
  'slot_uri': 'MIXS:0000502'} })
8710
8706
  mech_struc: Optional[MechStrucEnum] = Field(default=None, title="mechanical structure", description="""mechanical structure: a moving structure""", json_schema_extra = { "linkml_meta": {'alias': 'mech_struc',
@@ -8737,7 +8733,7 @@ class Biosample(Sample):
8737
8733
  'storage_units': {'tag': 'storage_units',
8738
8734
  'value': '[ppb]|[ppm]|umol/L'}},
8739
8735
  'domain_of': ['Biosample'],
8740
- 'examples': [{'value': '1800 parts per billion'}],
8736
+ 'examples': [{'value': '1800 [ppb]'}],
8741
8737
  'is_a': 'core field',
8742
8738
  'slot_uri': 'MIXS:0000101'} })
8743
8739
  micro_biomass_meth: Optional[str] = Field(default=None, title="microbial biomass method", description="""Reference or method used in determining microbial biomass""", json_schema_extra = { "linkml_meta": {'alias': 'micro_biomass_meth',
@@ -8816,7 +8812,7 @@ class Biosample(Sample):
8816
8812
  'storage_units': {'tag': 'storage_units',
8817
8813
  'value': '[ppm]|mg/L|umol/L'}},
8818
8814
  'domain_of': ['Biosample'],
8819
- 'examples': [{'value': '65 micromole per liter'}],
8815
+ 'examples': [{'value': '65 umol/L'}],
8820
8816
  'is_a': 'core field',
8821
8817
  'slot_uri': 'MIXS:0000425'} })
8822
8818
  nitrite: Optional[QuantityValue] = Field(default=None, title="nitrite", description="""Concentration of nitrite in the sample""", json_schema_extra = { "linkml_meta": {'alias': 'nitrite',
@@ -8830,7 +8826,7 @@ class Biosample(Sample):
8830
8826
  'storage_units': {'tag': 'storage_units',
8831
8827
  'value': '[ppm]|mg/L|umol/L'}},
8832
8828
  'domain_of': ['Biosample'],
8833
- 'examples': [{'value': '0.5 micromole per liter'}],
8829
+ 'examples': [{'value': '0.5 umol/L'}],
8834
8830
  'is_a': 'core field',
8835
8831
  'slot_uri': 'MIXS:0000426'} })
8836
8832
  nitro: Optional[QuantityValue] = Field(default=None, title="nitrogen", description="""Concentration of nitrogen (total)""", json_schema_extra = { "linkml_meta": {'alias': 'nitro',
@@ -8843,7 +8839,7 @@ class Biosample(Sample):
8843
8839
  'storage_units': {'tag': 'storage_units',
8844
8840
  'value': 'umol/L|%'}},
8845
8841
  'domain_of': ['Biosample'],
8846
- 'examples': [{'value': '4.2 micromole per liter'}],
8842
+ 'examples': [{'value': '4.2 umol/L'}],
8847
8843
  'is_a': 'core field',
8848
8844
  'slot_uri': 'MIXS:0000504'} })
8849
8845
  non_min_nutr_regm: Optional[list[str]] = Field(default=None, title="non-mineral nutrient regimen", description="""Information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment regimen including how many times the treatment was repeated, how long each treatment lasted, and the start and end time of the entire treatment; can include multiple non-mineral nutrient regimens""", json_schema_extra = { "linkml_meta": {'alias': 'non_min_nutr_regm',
@@ -8932,9 +8928,9 @@ class Biosample(Sample):
8932
8928
  'preferred_unit': {'tag': 'preferred_unit',
8933
8929
  'value': 'micromole per liter'},
8934
8930
  'storage_units': {'tag': 'storage_units',
8935
- 'value': 'umol/L|%'}},
8931
+ 'value': 'umol/L|%|mg/L'}},
8936
8932
  'domain_of': ['Biosample'],
8937
- 'examples': [{'value': '1.5 microgram per liter'}],
8933
+ 'examples': [{'value': '0.015 mg/L'}],
8938
8934
  'is_a': 'core field',
8939
8935
  'slot_uri': 'MIXS:0000508'} })
8940
8936
  org_count_qpcr_info: Optional[str] = Field(default=None, title="organism count qPCR information", description="""If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)""", json_schema_extra = { "linkml_meta": {'alias': 'org_count_qpcr_info',
@@ -8966,7 +8962,7 @@ class Biosample(Sample):
8966
8962
  'value': 'microgram per liter'},
8967
8963
  'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
8968
8964
  'domain_of': ['Biosample'],
8969
- 'examples': [{'value': '1.75 milligram per cubic meter'}],
8965
+ 'examples': [{'value': '200 ug/L'}],
8970
8966
  'is_a': 'core field',
8971
8967
  'slot_uri': 'MIXS:0000204'} })
8972
8968
  org_nitro: Optional[QuantityValue] = Field(default=None, title="organic nitrogen", description="""Concentration of organic nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'org_nitro',
@@ -8978,7 +8974,7 @@ class Biosample(Sample):
8978
8974
  'value': 'microgram per liter'},
8979
8975
  'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
8980
8976
  'domain_of': ['Biosample'],
8981
- 'examples': [{'value': '4 micromole per liter'}],
8977
+ 'examples': [{'value': '4 ug/L'}],
8982
8978
  'is_a': 'core field',
8983
8979
  'slot_uri': 'MIXS:0000205'} })
8984
8980
  org_particles: Optional[list[TextValue]] = Field(default=None, title="organic particles", description="""Concentration of particles such as faeces, hairs, food, vomit, paper fibers, plant material, humus, etc.""", json_schema_extra = { "linkml_meta": {'alias': 'org_particles',
@@ -9040,7 +9036,7 @@ class Biosample(Sample):
9040
9036
  'storage_units': {'tag': 'storage_units',
9041
9037
  'value': '[ppm]|mg/L'}},
9042
9038
  'domain_of': ['Biosample'],
9043
- 'examples': [{'value': '600 parts per million'}],
9039
+ 'examples': [{'value': '600 [ppm]'}],
9044
9040
  'is_a': 'core field',
9045
9041
  'slot_uri': 'MIXS:0000104'} })
9046
9042
  part_org_carb: Optional[QuantityValue] = Field(default=None, title="particulate organic carbon", description="""Concentration of particulate organic carbon""", json_schema_extra = { "linkml_meta": {'alias': 'part_org_carb',
@@ -9053,7 +9049,7 @@ class Biosample(Sample):
9053
9049
  'storage_units': {'tag': 'storage_units',
9054
9050
  'value': 'ug/L|mg/L'}},
9055
9051
  'domain_of': ['Biosample'],
9056
- 'examples': [{'value': '1.92 micromole per liter'}],
9052
+ 'examples': [{'value': '0.02 mg/L'}],
9057
9053
  'is_a': 'core field',
9058
9054
  'slot_uri': 'MIXS:0000515'} })
9059
9055
  part_org_nitro: Optional[QuantityValue] = Field(default=None, title="particulate organic nitrogen", description="""Concentration of particulate organic nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'part_org_nitro',
@@ -9067,7 +9063,7 @@ class Biosample(Sample):
9067
9063
  'storage_units': {'tag': 'storage_units',
9068
9064
  'value': 'ug/L|umol/L|mg/L'}},
9069
9065
  'domain_of': ['Biosample'],
9070
- 'examples': [{'value': '0.3 micromole per liter'}],
9066
+ 'examples': [{'value': '0.3 umol/L'}],
9071
9067
  'is_a': 'core field',
9072
9068
  'slot_uri': 'MIXS:0000719'} })
9073
9069
  particle_class: Optional[list[TextValue]] = Field(default=None, title="particle classification", description="""Particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values""", json_schema_extra = { "linkml_meta": {'alias': 'particle_class',
@@ -9132,7 +9128,7 @@ class Biosample(Sample):
9132
9128
  'value': 'micromole per liter'},
9133
9129
  'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
9134
9130
  'domain_of': ['Biosample'],
9135
- 'examples': [{'value': '0.05 micromole per liter'}],
9131
+ 'examples': [{'value': '0.05 umol/L'}],
9136
9132
  'is_a': 'core field',
9137
9133
  'slot_uri': 'MIXS:0000516'} })
9138
9134
  ph: Optional[float] = Field(default=None, title="pH", description="""Ph measurement of the sample, or liquid portion of sample, or aqueous phase of the fluid""", json_schema_extra = { "linkml_meta": {'alias': 'ph',
@@ -9190,7 +9186,7 @@ class Biosample(Sample):
9190
9186
  'value': 'micromole per liter'},
9191
9187
  'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
9192
9188
  'domain_of': ['Biosample'],
9193
- 'examples': [{'value': '0.7 micromole per liter'}],
9189
+ 'examples': [{'value': '0.7 umol/L'}],
9194
9190
  'is_a': 'core field',
9195
9191
  'slot_uri': 'MIXS:0000505'} })
9196
9192
  phosplipid_fatt_acid: Optional[list[TextValue]] = Field(default=None, title="phospholipid fatty acid", description="""Concentration of phospholipid fatty acids; can include multiple values""", json_schema_extra = { "linkml_meta": {'alias': 'phosplipid_fatt_acid',
@@ -9217,7 +9213,7 @@ class Biosample(Sample):
9217
9213
  'storage_units': {'tag': 'storage_units',
9218
9214
  'value': 'umol/m2/s'}},
9219
9215
  'domain_of': ['Biosample'],
9220
- 'examples': [{'value': '3.926 micromole photons per second per square meter'}],
9216
+ 'examples': [{'value': '3.926 umol/m2/s'}],
9221
9217
  'is_a': 'core field',
9222
9218
  'slot_uri': 'MIXS:0000725'} })
9223
9219
  plant_growth_med: Optional[Union[ControlledTermValue,ControlledIdentifiedTermValue]] = Field(default=None, title="plant growth medium", description="""Specification of the media for growing the plants or tissue cultured samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in vitro liquid culture medium. Recommended value is a specific value from EO:plant growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147) or other controlled vocabulary""", json_schema_extra = { "linkml_meta": {'alias': 'plant_growth_med',
@@ -9295,7 +9291,7 @@ class Biosample(Sample):
9295
9291
  'storage_units': {'tag': 'storage_units',
9296
9292
  'value': '[ppm]|mg/L|mg/kg'}},
9297
9293
  'domain_of': ['Biosample'],
9298
- 'examples': [{'value': '463 milligram per liter'}],
9294
+ 'examples': [{'value': '463 mg/L'}],
9299
9295
  'is_a': 'core field',
9300
9296
  'slot_uri': 'MIXS:0000430'} })
9301
9297
  pour_point: Optional[QuantityValue] = Field(default=None, title="pour point", description="""Temperature at which a liquid becomes semi solid and loses its flow characteristics. In crude oil a high¬†pour point¬†is generally associated with a high paraffin content, typically found in crude deriving from a larger proportion of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)""", json_schema_extra = { "linkml_meta": {'alias': 'pour_point',
@@ -9338,7 +9334,7 @@ class Biosample(Sample):
9338
9334
  'value': 'atmosphere'},
9339
9335
  'storage_units': {'tag': 'storage_units', 'value': 'atm'}},
9340
9336
  'domain_of': ['Biosample'],
9341
- 'examples': [{'value': '50 atmosphere'}],
9337
+ 'examples': [{'value': '50 atm'}],
9342
9338
  'is_a': 'core field',
9343
9339
  'slot_uri': 'MIXS:0000412'} })
9344
9340
  prev_land_use_meth: Optional[str] = Field(default=None, title="history/previous land use method", description="""Reference or method used in determining previous land use and dates""", json_schema_extra = { "linkml_meta": {'alias': 'prev_land_use_meth',
@@ -9373,7 +9369,7 @@ class Biosample(Sample):
9373
9369
  'storage_units': {'tag': 'storage_units',
9374
9370
  'value': 'g/m2/d|mg/m3/d'}},
9375
9371
  'domain_of': ['Biosample'],
9376
- 'examples': [{'value': '100 milligram per cubic meter per day'}],
9372
+ 'examples': [{'value': '100 mg/m3/d'}],
9377
9373
  'is_a': 'core field',
9378
9374
  'slot_uri': 'MIXS:0000728'} })
9379
9375
  primary_treatment: Optional[TextValue] = Field(default=None, title="primary treatment", description="""The process to produce both a generally homogeneous liquid capable of being treated biologically and a sludge that can be separately treated or processed""", json_schema_extra = { "linkml_meta": {'alias': 'primary_treatment',
@@ -9474,7 +9470,7 @@ class Biosample(Sample):
9474
9470
  'value': 'millivolt'},
9475
9471
  'storage_units': {'tag': 'storage_units', 'value': 'mV'}},
9476
9472
  'domain_of': ['Biosample'],
9477
- 'examples': [{'value': '300 millivolt'}],
9473
+ 'examples': [{'value': '300 mV'}],
9478
9474
  'is_a': 'core field',
9479
9475
  'slot_uri': 'MIXS:0000182'} })
9480
9476
  rel_air_humidity: Optional[QuantityValue] = Field(default=None, title="relative air humidity", description="""Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air""", json_schema_extra = { "linkml_meta": {'alias': 'rel_air_humidity',
@@ -9814,7 +9810,7 @@ class Biosample(Sample):
9814
9810
  'percentage'},
9815
9811
  'storage_units': {'tag': 'storage_units', 'value': '%|mg/L'}},
9816
9812
  'domain_of': ['Biosample'],
9817
- 'examples': [{'value': '25 practical salinity unit'}],
9813
+ 'examples': [{'value': '70 mg/L'}],
9818
9814
  'is_a': 'core field',
9819
9815
  'slot_uri': 'MIXS:0000183'} })
9820
9816
  salinity_meth: Optional[TextValue] = Field(default=None, title="salinity method", description="""Reference or method used in determining salinity""", json_schema_extra = { "linkml_meta": {'alias': 'salinity_meth',
@@ -9926,7 +9922,7 @@ class Biosample(Sample):
9926
9922
  'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
9927
9923
  'storage_units': {'tag': 'storage_units', 'value': 'm'}},
9928
9924
  'domain_of': ['Biosample'],
9929
- 'examples': [{'value': '1534 meter;MSL'}],
9925
+ 'examples': [{'value': '1534 m'}],
9930
9926
  'is_a': 'core field',
9931
9927
  'slot_uri': 'MIXS:0000413'} })
9932
9928
  samp_name: Optional[str] = Field(default=None, title="sample name", description="""A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.""", json_schema_extra = { "linkml_meta": {'alias': 'samp_name',
@@ -9967,7 +9963,7 @@ class Biosample(Sample):
9967
9963
  'storage_units': {'tag': 'storage_units',
9968
9964
  'value': 'L|g|mL|mg'}},
9969
9965
  'domain_of': ['Biosample'],
9970
- 'examples': [{'value': '5 liter'}],
9966
+ 'examples': [{'value': '5 L'}],
9971
9967
  'is_a': 'nucleic acid sequence source field',
9972
9968
  'slot_uri': 'MIXS:0000001'} })
9973
9969
  samp_sort_meth: Optional[list[TextValue]] = Field(default=None, title="sample size sorting method", description="""Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor.""", json_schema_extra = { "linkml_meta": {'alias': 'samp_sort_meth',
@@ -10009,7 +10005,7 @@ class Biosample(Sample):
10009
10005
  'value': 'degree Celsius'},
10010
10006
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
10011
10007
  'domain_of': ['Biosample'],
10012
- 'examples': [{'value': '-80 degree Celsius'}],
10008
+ 'examples': [{'value': '-80 Cel'}],
10013
10009
  'is_a': 'core field',
10014
10010
  'slot_uri': 'MIXS:0000110'} })
10015
10011
  samp_subtype: Optional[SampSubtypeEnum] = Field(default=None, title="sample subtype", description="""Name of sample sub-type. For example if \"sample type\" is \"Produced Water\" then subtype could be \"Oil Phase\" or \"Water Phase\". If \"other\" is specified, please propose entry in \"additional info\" field""", json_schema_extra = { "linkml_meta": {'alias': 'samp_subtype',
@@ -10138,7 +10134,7 @@ class Biosample(Sample):
10138
10134
  '(June, July, August), autumn (September, October, November) and '
10139
10135
  'winter (December, January, February).'],
10140
10136
  'domain_of': ['Biosample'],
10141
- 'examples': [{'value': '0.4 inch'}, {'value': '10.16 mm'}],
10137
+ 'examples': [{'value': '10 mm'}],
10142
10138
  'is_a': 'core field',
10143
10139
  'notes': ['mean and average are the same thing, but it seems like bad '
10144
10140
  'practice to not be consistent. Changed mean to average'],
@@ -10154,7 +10150,7 @@ class Biosample(Sample):
10154
10150
  'value': 'degree Celsius'},
10155
10151
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
10156
10152
  'domain_of': ['Biosample'],
10157
- 'examples': [{'value': '18 degree Celsius'}],
10153
+ 'examples': [{'value': '18 Cel'}],
10158
10154
  'is_a': 'core field',
10159
10155
  'slot_uri': 'MIXS:0000643'} })
10160
10156
  season_use: Optional[SeasonUseEnum] = Field(default=None, title="seasonal use", description="""The seasons the space is occupied""", json_schema_extra = { "linkml_meta": {'alias': 'season_use',
@@ -10268,7 +10264,7 @@ class Biosample(Sample):
10268
10264
  'value': 'micromole per liter'},
10269
10265
  'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
10270
10266
  'domain_of': ['Biosample'],
10271
- 'examples': [{'value': '0.05 micromole per liter'}],
10267
+ 'examples': [{'value': '0.05 umol/L'}],
10272
10268
  'is_a': 'core field',
10273
10269
  'slot_uri': 'MIXS:0000184'} })
10274
10270
  size_frac: Optional[TextValue] = Field(default=None, title="size fraction selected", description="""Filtering pore size used in sample preparation""", json_schema_extra = { "linkml_meta": {'alias': 'size_frac',
@@ -10288,7 +10284,7 @@ class Biosample(Sample):
10288
10284
  'value': 'micrometer'},
10289
10285
  'storage_units': {'tag': 'storage_units', 'value': 'um'}},
10290
10286
  'domain_of': ['Biosample'],
10291
- 'examples': [{'value': '0.2 micrometer'}],
10287
+ 'examples': [{'value': '0.2 um'}],
10292
10288
  'is_a': 'core field',
10293
10289
  'slot_uri': 'MIXS:0000735'} })
10294
10290
  size_frac_up: Optional[QuantityValue] = Field(default=None, title="size-fraction upper threshold", description="""Refers to the mesh/pore size used to retain the sample. Materials smaller than the size threshold are excluded from the sample""", json_schema_extra = { "linkml_meta": {'alias': 'size_frac_up',
@@ -10299,7 +10295,7 @@ class Biosample(Sample):
10299
10295
  'value': 'micrometer'},
10300
10296
  'storage_units': {'tag': 'storage_units', 'value': 'um'}},
10301
10297
  'domain_of': ['Biosample'],
10302
- 'examples': [{'value': '20 micrometer'}],
10298
+ 'examples': [{'value': '20 um'}],
10303
10299
  'is_a': 'core field',
10304
10300
  'slot_uri': 'MIXS:0000736'} })
10305
10301
  slope_aspect: Optional[QuantityValue] = Field(default=None, title="slope aspect", description="""The direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees). This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.""", json_schema_extra = { "linkml_meta": {'alias': 'slope_aspect',
@@ -10313,7 +10309,7 @@ class Biosample(Sample):
10313
10309
  'degrees from 0 to 360, where 0 is north-facing, 90 is '
10314
10310
  'east-facing, 180 is south-facing, and 270 is west-facing.'],
10315
10311
  'domain_of': ['Biosample'],
10316
- 'examples': [{'value': '35'}],
10312
+ 'examples': [{'value': '35 deg'}],
10317
10313
  'is_a': 'core field',
10318
10314
  'slot_uri': 'MIXS:0000647'} })
10319
10315
  slope_gradient: Optional[QuantityValue] = Field(default=None, title="slope gradient", description="""Commonly called 'slope'. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer""", json_schema_extra = { "linkml_meta": {'alias': 'slope_gradient',
@@ -10352,7 +10348,7 @@ class Biosample(Sample):
10352
10348
  'storage_units': {'tag': 'storage_units',
10353
10349
  'value': '[ppm]|mg/L'}},
10354
10350
  'domain_of': ['Biosample'],
10355
- 'examples': [{'value': '10.5 milligram per liter'}],
10351
+ 'examples': [{'value': '10.5 mg/L'}],
10356
10352
  'is_a': 'core field',
10357
10353
  'slot_uri': 'MIXS:0000428'} })
10358
10354
  soil_horizon: Optional[SoilHorizonEnum] = Field(default=None, title="soil horizon", description="""Specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath""", json_schema_extra = { "linkml_meta": {'alias': 'soil_horizon',
@@ -10417,7 +10413,7 @@ class Biosample(Sample):
10417
10413
  'storage_units': {'tag': 'storage_units',
10418
10414
  'value': 'kW/m2/d|erg/cm2/s'}},
10419
10415
  'domain_of': ['Biosample'],
10420
- 'examples': [{'value': '1.36 kilowatts per square meter per day'}],
10416
+ 'examples': [{'value': '1.36 kW/m2/d'}],
10421
10417
  'is_a': 'core field',
10422
10418
  'slot_uri': 'MIXS:0000112'} })
10423
10419
  soluble_inorg_mat: Optional[list[TextValue]] = Field(default=None, title="soluble inorganic material", description="""Concentration of substances such as ammonia, road-salt, sea-salt, cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc.""", json_schema_extra = { "linkml_meta": {'alias': 'soluble_inorg_mat',
@@ -10461,7 +10457,7 @@ class Biosample(Sample):
10461
10457
  'storage_units': {'tag': 'storage_units',
10462
10458
  'value': '[ppm]|mg/L|umol/L|ug/L'}},
10463
10459
  'domain_of': ['Biosample'],
10464
- 'examples': [{'value': '0.1 milligram per liter'}],
10460
+ 'examples': [{'value': '0.1 mg/L'}],
10465
10461
  'is_a': 'core field',
10466
10462
  'slot_uri': 'MIXS:0000738'} })
10467
10463
  source_mat_id: Optional[TextValue] = Field(default=None, title="source material identifier", description="""A globally unique identifier assigned to the biological sample.""", json_schema_extra = { "linkml_meta": {'alias': 'source_mat_id',
@@ -10597,7 +10593,7 @@ class Biosample(Sample):
10597
10593
  'storage_units': {'tag': 'storage_units',
10598
10594
  'value': '[ppm]|mg/L|umol/L'}},
10599
10595
  'domain_of': ['Biosample'],
10600
- 'examples': [{'value': '5 micromole per liter'}],
10596
+ 'examples': [{'value': '5 umol/L'}],
10601
10597
  'is_a': 'core field',
10602
10598
  'slot_uri': 'MIXS:0000423'} })
10603
10599
  sulfate_fw: Optional[QuantityValue] = Field(default=None, title="sulfate in formation water", description="""Original sulfate concentration in the hydrocarbon resource""", json_schema_extra = { "linkml_meta": {'alias': 'sulfate_fw',
@@ -10623,7 +10619,7 @@ class Biosample(Sample):
10623
10619
  'storage_units': {'tag': 'storage_units',
10624
10620
  'value': '[ppm]|mg/L|umol/L'}},
10625
10621
  'domain_of': ['Biosample'],
10626
- 'examples': [{'value': '2 micromole per liter'}],
10622
+ 'examples': [{'value': '2 umol/L'}],
10627
10623
  'is_a': 'core field',
10628
10624
  'slot_uri': 'MIXS:0000424'} })
10629
10625
  surf_air_cont: Optional[list[SurfAirContEnum]] = Field(default=None, title="surface-air contaminant", description="""Contaminant identified on surface""", json_schema_extra = { "linkml_meta": {'alias': 'surf_air_cont',
@@ -10668,7 +10664,7 @@ class Biosample(Sample):
10668
10664
  'storage_units': {'tag': 'storage_units',
10669
10665
  'value': '[ppm]|g/m2|g/m3'}},
10670
10666
  'domain_of': ['Biosample'],
10671
- 'examples': [{'value': '0.01 gram per square meter'}],
10667
+ 'examples': [{'value': '0.01 g/m2'}],
10672
10668
  'is_a': 'core field',
10673
10669
  'slot_uri': 'MIXS:0000128'} })
10674
10670
  surf_moisture_ph: Optional[float] = Field(default=None, title="surface moisture pH", description="""ph measurement of surface""", json_schema_extra = { "linkml_meta": {'alias': 'surf_moisture_ph',
@@ -10689,7 +10685,7 @@ class Biosample(Sample):
10689
10685
  'value': 'degree Celsius'},
10690
10686
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
10691
10687
  'domain_of': ['Biosample'],
10692
- 'examples': [{'value': '15 degree Celsius'}],
10688
+ 'examples': [{'value': '15 Cel'}],
10693
10689
  'is_a': 'core field',
10694
10690
  'slot_uri': 'MIXS:0000125'} })
10695
10691
  suspend_part_matter: Optional[QuantityValue] = Field(default=None, title="suspended particulate matter", description="""Concentration of suspended particulate matter""", json_schema_extra = { "linkml_meta": {'alias': 'suspend_part_matter',
@@ -10701,7 +10697,7 @@ class Biosample(Sample):
10701
10697
  'value': 'milligram per liter'},
10702
10698
  'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
10703
10699
  'domain_of': ['Biosample'],
10704
- 'examples': [{'value': '0.5 milligram per liter'}],
10700
+ 'examples': [{'value': '0.5 mg/L'}],
10705
10701
  'is_a': 'core field',
10706
10702
  'slot_uri': 'MIXS:0000741'} })
10707
10703
  suspend_solids: Optional[list[TextValue]] = Field(default=None, title="suspended solids", description="""Concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter; can include multiple substances""", json_schema_extra = { "linkml_meta": {'alias': 'suspend_solids',
@@ -10739,7 +10735,7 @@ class Biosample(Sample):
10739
10735
  'value': 'degree Celsius'},
10740
10736
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
10741
10737
  'domain_of': ['Biosample'],
10742
- 'examples': [{'value': '25 degree Celsius'}],
10738
+ 'examples': [{'value': '25 Cel'}],
10743
10739
  'is_a': 'environment field',
10744
10740
  'slot_uri': 'MIXS:0000113'} })
10745
10741
  temp_out: Optional[QuantityValue] = Field(default=None, title="temperature outside house", description="""The recorded temperature value at sampling time outside""", json_schema_extra = { "linkml_meta": {'alias': 'temp_out',
@@ -10751,7 +10747,7 @@ class Biosample(Sample):
10751
10747
  'value': 'degree Celsius'},
10752
10748
  'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
10753
10749
  'domain_of': ['Biosample'],
10754
- 'examples': [{'value': '5 degree Celsius'}],
10750
+ 'examples': [{'value': '5 Cel'}],
10755
10751
  'is_a': 'core field',
10756
10752
  'slot_uri': 'MIXS:0000197'} })
10757
10753
  tertiary_treatment: Optional[TextValue] = Field(default=None, title="tertiary treatment", description="""The process providing a final treatment stage to raise the effluent quality before it is discharged to the receiving environment""", json_schema_extra = { "linkml_meta": {'alias': 'tertiary_treatment',
@@ -10830,7 +10826,7 @@ class Biosample(Sample):
10830
10826
  'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
10831
10827
  'storage_units': {'tag': 'storage_units', 'value': 'm'}},
10832
10828
  'domain_of': ['Biosample'],
10833
- 'examples': [{'value': '500 meter'}],
10829
+ 'examples': [{'value': '500 m'}],
10834
10830
  'is_a': 'core field',
10835
10831
  'slot_uri': 'MIXS:0000634'} })
10836
10832
  tot_diss_nitro: Optional[QuantityValue] = Field(default=None, title="total dissolved nitrogen", description="""Total dissolved nitrogen concentration, reported as nitrogen, measured by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'tot_diss_nitro',
@@ -10843,7 +10839,7 @@ class Biosample(Sample):
10843
10839
  'storage_units': {'tag': 'storage_units',
10844
10840
  'value': 'ug/L|umol/L'}},
10845
10841
  'domain_of': ['Biosample'],
10846
- 'examples': [{'value': '40 microgram per liter'}],
10842
+ 'examples': [{'value': '40 ug/L'}],
10847
10843
  'is_a': 'core field',
10848
10844
  'slot_uri': 'MIXS:0000744'} })
10849
10845
  tot_inorg_nitro: Optional[QuantityValue] = Field(default=None, title="total inorganic nitrogen", description="""Total inorganic nitrogen content""", json_schema_extra = { "linkml_meta": {'alias': 'tot_inorg_nitro',
@@ -10855,7 +10851,7 @@ class Biosample(Sample):
10855
10851
  'value': 'microgram per liter'},
10856
10852
  'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
10857
10853
  'domain_of': ['Biosample'],
10858
- 'examples': [{'value': '40 microgram per liter'}],
10854
+ 'examples': [{'value': '40 ug/L'}],
10859
10855
  'is_a': 'core field',
10860
10856
  'slot_uri': 'MIXS:0000745'} })
10861
10857
  tot_iron: Optional[QuantityValue] = Field(default=None, title="total iron", description="""Concentration of total iron in the sample""", json_schema_extra = { "linkml_meta": {'alias': 'tot_iron',
@@ -10883,7 +10879,7 @@ class Biosample(Sample):
10883
10879
  'storage_units': {'tag': 'storage_units',
10884
10880
  'value': 'mg/L|ug/L|umol/L|%'}},
10885
10881
  'domain_of': ['Biosample'],
10886
- 'examples': [{'value': '50 micromole per liter'}],
10882
+ 'examples': [{'value': '50 umol/L'}],
10887
10883
  'is_a': 'core field',
10888
10884
  'slot_uri': 'MIXS:0000102'} })
10889
10885
  tot_nitro_cont_meth: Optional[str] = Field(default=None, title="total nitrogen content method", description="""Reference or method used in determining the total nitrogen""", json_schema_extra = { "linkml_meta": {'alias': 'tot_nitro_cont_meth',
@@ -10908,7 +10904,7 @@ class Biosample(Sample):
10908
10904
  'storage_units': {'tag': 'storage_units',
10909
10905
  'value': 'mg/L|ug/L|umol/L|%'}},
10910
10906
  'domain_of': ['Biosample'],
10911
- 'examples': [{'value': '5 mg N/ L'}],
10907
+ 'examples': [{'value': '5 mg/L'}],
10912
10908
  'is_a': 'core field',
10913
10909
  'slot_uri': 'MIXS:0000530'} })
10914
10910
  tot_org_c_meth: Optional[TextValue] = Field(default=None, title="total organic carbon method", description="""Reference or method used in determining total organic carbon""", json_schema_extra = { "linkml_meta": {'alias': 'tot_org_c_meth',
@@ -10931,7 +10927,7 @@ class Biosample(Sample):
10931
10927
  'material'},
10932
10928
  'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
10933
10929
  'domain_of': ['Biosample'],
10934
- 'examples': [{'value': '5 mg N/ L'}],
10930
+ 'examples': [{'value': '5 mg/L'}],
10935
10931
  'is_a': 'core field',
10936
10932
  'slot_uri': 'MIXS:0000533',
10937
10933
  'todos': ['check description. How are they different?']} })
@@ -10946,7 +10942,7 @@ class Biosample(Sample):
10946
10942
  'storage_units': {'tag': 'storage_units',
10947
10943
  'value': 'ug/L|umol/L'}},
10948
10944
  'domain_of': ['Biosample'],
10949
- 'examples': [{'value': '35 micromole per liter'}],
10945
+ 'examples': [{'value': '35 umol/L'}],
10950
10946
  'is_a': 'core field',
10951
10947
  'slot_uri': 'MIXS:0000747'} })
10952
10948
  tot_phosp: Optional[QuantityValue] = Field(default=None, title="total phosphorus", description="""Total phosphorus concentration in the sample, calculated by: total phosphorus = total dissolved phosphorus + particulate phosphorus""", json_schema_extra = { "linkml_meta": {'alias': 'tot_phosp',
@@ -10960,7 +10956,7 @@ class Biosample(Sample):
10960
10956
  'storage_units': {'tag': 'storage_units',
10961
10957
  'value': '[ppm]|mg/L|umol/L'}},
10962
10958
  'domain_of': ['Biosample'],
10963
- 'examples': [{'value': '0.03 milligram per liter'}],
10959
+ 'examples': [{'value': '0.03 mg/L'}],
10964
10960
  'is_a': 'core field',
10965
10961
  'slot_uri': 'MIXS:0000117'} })
10966
10962
  tot_phosphate: Optional[QuantityValue] = Field(default=None, title="total phosphate", description="""Total amount or concentration of phosphate""", json_schema_extra = { "linkml_meta": {'alias': 'tot_phosphate',
@@ -11029,7 +11025,7 @@ class Biosample(Sample):
11029
11025
  'storage_units': {'tag': 'storage_units',
11030
11026
  'value': '[NTU]|[FNU]'}},
11031
11027
  'domain_of': ['Biosample'],
11032
- 'examples': [{'value': '0.3 nephelometric turbidity units'}],
11028
+ 'examples': [{'value': '0.3 [NTU]'}],
11033
11029
  'is_a': 'core field',
11034
11030
  'slot_uri': 'MIXS:0000191'} })
11035
11031
  tvdss_of_hcr_press: Optional[QuantityValue] = Field(default=None, title="depth (TVDSS) of hydrocarbon resource pressure", description="""True vertical depth subsea (TVDSS) of the hydrocarbon resource where the original pressure was measured (e.g. 1578 m).""", json_schema_extra = { "linkml_meta": {'alias': 'tvdss_of_hcr_press',
@@ -11075,7 +11071,7 @@ class Biosample(Sample):
11075
11071
  'storage_units': {'tag': 'storage_units',
11076
11072
  'value': 'L/s|m3/min'}},
11077
11073
  'domain_of': ['Biosample'],
11078
- 'examples': [{'value': '750 cubic meter per minute'}],
11074
+ 'examples': [{'value': '750 m3/min'}],
11079
11075
  'is_a': 'core field',
11080
11076
  'slot_uri': 'MIXS:0000114'} })
11081
11077
  ventilation_type: Optional[TextValue] = Field(default=None, title="ventilation type", description="""Ventilation system used in the sampled premises""", json_schema_extra = { "linkml_meta": {'alias': 'ventilation_type',
@@ -11298,7 +11294,7 @@ class Biosample(Sample):
11298
11294
  'storage_units': {'tag': 'storage_units',
11299
11295
  'value': '[kn_i]|m3/s'}},
11300
11296
  'domain_of': ['Biosample'],
11301
- 'examples': [{'value': '10 cubic meter per second'}],
11297
+ 'examples': [{'value': '10 m3/s'}],
11302
11298
  'is_a': 'core field',
11303
11299
  'slot_uri': 'MIXS:0000203'} })
11304
11300
  water_cut: Optional[QuantityValue] = Field(default=None, title="water cut", description="""Current amount of water (%) in a produced fluid stream; or the average of the combined streams""", json_schema_extra = { "linkml_meta": {'alias': 'water_cut',
@@ -11413,7 +11409,7 @@ class Biosample(Sample):
11413
11409
  'storage_units': {'tag': 'storage_units',
11414
11410
  'value': 'km/h|m/s'}},
11415
11411
  'domain_of': ['Biosample'],
11416
- 'examples': [{'value': '21 kilometer per hour'}],
11412
+ 'examples': [{'value': '21 km/h'}],
11417
11413
  'is_a': 'core field',
11418
11414
  'slot_uri': 'MIXS:0000118'} })
11419
11415
  window_cond: Optional[WindowCondEnum] = Field(default=None, title="window condition", description="""The physical condition of the window at the time of sampling""", json_schema_extra = { "linkml_meta": {'alias': 'window_cond',
@@ -11951,7 +11947,7 @@ class Biosample(Sample):
11951
11947
  'comments': ['This is the mass of lime, in mg, needed to raise the pH of one '
11952
11948
  'kg of soil by one pH unit'],
11953
11949
  'domain_of': ['Biosample'],
11954
- 'examples': [{'value': '543 mg/kg'}],
11950
+ 'examples': [{'value': '543 [ppm]'}],
11955
11951
  'see_also': ['https://www.ornl.gov/content/bio-scales-0',
11956
11952
  'https://secure.caes.uga.edu/extension/publications/files/pdf/C%20874_5.PDF']} })
11957
11953
  lbceq: Optional[QuantityValue] = Field(default=None, title="lime buffer capacity (after 5 day incubation)", description="""lime buffer capacity, determined at equilibrium after 5 day incubation""", json_schema_extra = { "linkml_meta": {'alias': 'lbceq',
@@ -11965,7 +11961,7 @@ class Biosample(Sample):
11965
11961
  'comments': ['This is the mass of lime, in mg, needed to raise the pH of one '
11966
11962
  'kg of soil by one pH unit'],
11967
11963
  'domain_of': ['Biosample'],
11968
- 'examples': [{'value': '1575 mg/kg'}],
11964
+ 'examples': [{'value': '1575 [ppm]'}],
11969
11965
  'see_also': ['https://www.ornl.gov/content/bio-scales-0']} })
11970
11966
  id: str = Field(default=..., description="""An NMDC assigned unique identifier for a biosample submitted to NMDC.""", json_schema_extra = { "linkml_meta": {'alias': 'id',
11971
11967
  'domain_of': ['NamedThing'],