nmdc-schema 11.11.1__py3-none-any.whl → 11.12.0rc1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- nmdc_schema/nmdc-pydantic.py +601 -224
- nmdc_schema/nmdc.py +133 -39
- nmdc_schema/nmdc.schema.json +37 -14
- nmdc_schema/nmdc_materialized_patterns.json +1090 -57
- nmdc_schema/nmdc_materialized_patterns.schema.json +37 -14
- nmdc_schema/nmdc_materialized_patterns.yaml +845 -52
- {nmdc_schema-11.11.1.dist-info → nmdc_schema-11.12.0rc1.dist-info}/METADATA +1 -1
- {nmdc_schema-11.11.1.dist-info → nmdc_schema-11.12.0rc1.dist-info}/RECORD +11 -11
- {nmdc_schema-11.11.1.dist-info → nmdc_schema-11.12.0rc1.dist-info}/WHEEL +1 -1
- {nmdc_schema-11.11.1.dist-info → nmdc_schema-11.12.0rc1.dist-info}/entry_points.txt +9 -0
- {nmdc_schema-11.11.1.dist-info → nmdc_schema-11.12.0rc1.dist-info}/licenses/LICENSE +0 -0
nmdc_schema/nmdc-pydantic.py
CHANGED
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@@ -27,7 +27,7 @@ from pydantic import (
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metamodel_version = "None"
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version = "11.
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version = "11.12.0rc1"
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class ConfiguredBaseModel(BaseModel):
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@@ -960,11 +960,11 @@ class UnitEnum(str, Enum):
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960
960
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"""
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961
961
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The Unified Code for Units of Measure (UCUM) representation of percent.
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"""
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963
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963
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JSOLIDUSdegree_Celsius = "J/K"
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"""
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965
965
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The Unified Code for Units of Measure (UCUM) representation of joule per kelvin.
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966
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"""
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967
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degrees_Celsius = "Cel"
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"""
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969
969
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The Unified Code for Units of Measure (UCUM) representation of degrees Celsius; a SI unit of temperature equal to one unit Kelvin.
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970
970
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"""
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@@ -972,6 +972,10 @@ class UnitEnum(str, Enum):
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"""
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973
973
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The Unified Code for Units of Measure (UCUM) representation of centimeter.
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"""
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cP = "cP"
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"""
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The Unified Code for Units of Measure (UCUM) representation of centipoise.
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978
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"""
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d = "d"
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"""
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981
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The Unified Code for Units of Measure (UCUM) representation of day.
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@@ -1040,7 +1044,7 @@ class UnitEnum(str, Enum):
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"""
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1045
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The Unified Code for Units of Measure (UCUM) representation of watts per square meter.
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"""
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-
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years = "a"
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"""
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The Unified Code for Units of Measure (UCUM) representation of year.
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"""
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@@ -1076,7 +1080,7 @@ class UnitEnum(str, Enum):
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"""
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The Unified Code for Units of Measure (UCUM) representation of micromoles per kilogram.
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"""
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micromoles_per_square_meter_per_second = "umol/m2/s"
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"""
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The Unified Code for Units of Measure (UCUM) representation of micromoles per square meter per second.
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"""
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@@ -1108,10 +1112,6 @@ class UnitEnum(str, Enum):
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"""
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The Unified Code for Units of Measure (UCUM) representation of millivolt.
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"""
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1111
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PSU = "PSU"
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"""
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The Unified Code for Units of Measure (UCUM) representation of practical salinity unit.
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"""
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L = "L"
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"""
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1117
1117
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The Unified Code for Units of Measure (UCUM) representation of liter.
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@@ -1120,11 +1120,7 @@ class UnitEnum(str, Enum):
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1120
1120
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"""
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1121
1121
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The Unified Code for Units of Measure (UCUM) representation of micrometer.
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1122
1122
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"""
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1123
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-
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1124
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"""
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1125
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The Unified Code for Units of Measure (UCUM) representation of year.
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"""
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number_1 = "1"
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ratioSOLIDUSunitless = "1"
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"""
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The Unified Code for Units of Measure (UCUM) representation of dimensionless quantity.
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"""
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@@ -1136,7 +1132,7 @@ class UnitEnum(str, Enum):
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"""
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The Unified Code for Units of Measure (UCUM) representation of kilogram.
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"""
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-
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LEFT_SQUARE_BRACKETppthRIGHT_SQUARE_BRACKET = "[ppth]"
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"""
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1141
1137
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The Unified Code for Units of Measure (UCUM) representation of parts per thousand.
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"""
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@@ -1144,7 +1140,7 @@ class UnitEnum(str, Enum):
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"""
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1141
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The Unified Code for Units of Measure (UCUM) representation of gram per gram.
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"""
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-
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lux = "lx"
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"""
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1145
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The Unified Code for Units of Measure (UCUM) representation of lux.
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"""
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@@ -1292,6 +1288,10 @@ class UnitEnum(str, Enum):
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1288
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"""
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1293
1289
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The Unified Code for Units of Measure (UCUM) representation of hertz.
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1290
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"""
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number_1SOLIDUSd = "1/d"
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1292
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"""
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1293
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The Unified Code for Units of Measure (UCUM) representation of per day (frequency).
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1294
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"""
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1295
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kHz = "kHz"
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1296
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"""
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1297
1297
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The Unified Code for Units of Measure (UCUM) representation of kilohertz.
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@@ -1332,42 +1332,14 @@ class UnitEnum(str, Enum):
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"""
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1333
1333
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The Unified Code for Units of Measure (UCUM) representation of kilowatt.
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"""
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-
API = "API"
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"""
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The Unified Code for Units of Measure (UCUM) representation of API units.
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"""
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mbar = "mbar"
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"""
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1341
1337
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The Unified Code for Units of Measure (UCUM) representation of millibar.
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"""
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ratio = "ratio"
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"""
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1345
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The Unified Code for Units of Measure (UCUM) representation of ratio (dimensionless).
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"""
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JSOLIDUSCel = "J/Cel"
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"""
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1349
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The Unified Code for Units of Measure (UCUM) representation of joules per Celsius.
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1350
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"""
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uESOLIDUSm2SOLIDUSs = "uE/m2/s"
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1352
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"""
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1353
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The Unified Code for Units of Measure (UCUM) representation of microeinsteins per square meter per second.
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1354
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"""
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1339
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kWSOLIDUSm2 = "kW/m2"
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1340
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"""
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1341
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The Unified Code for Units of Measure (UCUM) representation of kilowatts per square meter.
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"""
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people = "people"
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"""
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1361
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The Unified Code for Units of Measure (UCUM) representation of people count.
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"""
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1363
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pets = "pets"
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-
"""
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1365
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The Unified Code for Units of Measure (UCUM) representation of pet count.
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"""
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plants = "plants"
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"""
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The Unified Code for Units of Measure (UCUM) representation of plant count.
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"""
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1343
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umolSOLIDUSsSOLIDUSm2 = "umol/s/m2"
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"""
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1373
1345
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The Unified Code for Units of Measure (UCUM) representation of micromoles per second per square meter.
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@@ -1380,7 +1352,7 @@ class UnitEnum(str, Enum):
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1380
1352
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"""
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1381
1353
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The Unified Code for Units of Measure (UCUM) representation of liters per hour.
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1382
1354
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"""
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-
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1355
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LEFT_SQUARE_BRACKETpHRIGHT_SQUARE_BRACKET = "[pH]"
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1384
1356
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"""
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1385
1357
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The Unified Code for Units of Measure (UCUM) representation of pH units.
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1386
1358
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"""
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@@ -1388,10 +1360,14 @@ class UnitEnum(str, Enum):
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1388
1360
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"""
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1389
1361
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The Unified Code for Units of Measure (UCUM) representation of kilowatts per square meter per day.
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1390
1362
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"""
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1391
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-
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Nephelometric_Turbidity_Units = "[NTU]"
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1392
1364
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"""
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1393
1365
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The Unified Code for Units of Measure (UCUM) representation of Nephelometric Turbidity Units.
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"""
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1367
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Formazin_Nephelometric_Units = "[FNU]"
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"""
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1369
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The Unified Code for Units of Measure (UCUM) representation of Formazin Nephelometric Units.
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"""
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1371
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m3SOLIDUSmin = "m3/min"
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1372
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"""
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1397
1373
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The Unified Code for Units of Measure (UCUM) representation of cubic meters per minute.
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@@ -1400,6 +1376,122 @@ class UnitEnum(str, Enum):
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1400
1376
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"""
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1401
1377
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The Unified Code for Units of Measure (UCUM) representation of kilometers per hour.
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1402
1378
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"""
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1379
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pounds_LEFT_PARENTHESISavoirdupoisRIGHT_PARENTHESIS = "[lb_av]"
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1380
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"""
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1381
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The Unified Code for Units of Measure (UCUM) representation of pound (avoirdupois).
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1382
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"""
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1383
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kgSOLIDUSkg = "kg/kg"
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1384
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"""
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1385
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The Unified Code for Units of Measure (UCUM) representation of kilogram per kilogram.
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1386
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"""
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1387
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+
ugSOLIDUSm3 = "ug/m3"
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1388
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"""
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1389
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The Unified Code for Units of Measure (UCUM) representation of micrograms per cubic meter.
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1390
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"""
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1391
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meqSOLIDUSL = "meq/L"
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1392
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"""
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1393
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The Unified Code for Units of Measure (UCUM) representation of milliequivalents per liter.
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1394
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"""
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1395
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lmSOLIDUSm2 = "lm/m2"
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1396
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+
"""
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1397
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+
The Unified Code for Units of Measure (UCUM) representation of lumens per square meter.
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1398
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+
"""
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1399
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+
mg = "mg"
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1400
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+
"""
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1401
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The Unified Code for Units of Measure (UCUM) representation of milligram.
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1402
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"""
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1403
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umolSOLIDUSLSOLIDUSh = "umol/L/h"
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1404
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"""
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1405
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The Unified Code for Units of Measure (UCUM) representation of micromoles per liter per hour.
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1406
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"""
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1407
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gSOLIDUScm3 = "g/cm3"
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1408
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"""
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1409
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The Unified Code for Units of Measure (UCUM) representation of grams per cubic centimeter.
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1410
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"""
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1411
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gSOLIDUSL = "g/L"
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1412
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"""
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1413
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The Unified Code for Units of Measure (UCUM) representation of grams per liter.
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1414
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"""
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1415
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+
wk = "wk"
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1416
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+
"""
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1417
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The Unified Code for Units of Measure (UCUM) representation of week.
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1418
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+
"""
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1419
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standard_gravity = "[g]"
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1420
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"""
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1421
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The Unified Code for Units of Measure (UCUM) representation of standard gravity.
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1422
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+
"""
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1423
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+
mSOLIDUSs2 = "m/s2"
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1424
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+
"""
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1425
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+
The Unified Code for Units of Measure (UCUM) representation of meters per second squared.
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1426
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+
"""
|
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1427
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+
molSOLIDUSg = "mol/g"
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1428
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+
"""
|
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1429
|
+
The Unified Code for Units of Measure (UCUM) representation of moles per gram.
|
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1430
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+
"""
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1431
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gSOLIDUSm2SOLIDUSd = "g/m2/d"
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1432
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"""
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1433
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+
The Unified Code for Units of Measure (UCUM) representation of grams per square meter per day.
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1434
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+
"""
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1435
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+
Gy = "Gy"
|
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1436
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+
"""
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1437
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+
The Unified Code for Units of Measure (UCUM) representation of gray (absorbed dose).
|
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1438
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+
"""
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1439
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rad_LEFT_PARENTHESISradiation_absorbed_doseRIGHT_PARENTHESIS = "RAD"
|
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1440
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+
"""
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1441
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The Unified Code for Units of Measure (UCUM) representation of rad (radiation absorbed dose).
|
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1442
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+
"""
|
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1443
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+
square_feet = "[sft_i]"
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1444
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+
"""
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1445
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The Unified Code for Units of Measure (UCUM) representation of square feet.
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1446
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+
"""
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1447
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cubic_feet = "[cft_i]"
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1448
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"""
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1449
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The Unified Code for Units of Measure (UCUM) representation of cubic feet.
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1450
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"""
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1451
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m3 = "m3"
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1452
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+
"""
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1453
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+
The Unified Code for Units of Measure (UCUM) representation of cubic meter.
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1454
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+
"""
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1455
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ug = "ug"
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1456
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+
"""
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1457
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The Unified Code for Units of Measure (UCUM) representation of microgram.
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1458
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+
"""
|
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1459
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+
millimeters_per_year = "mm/a"
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1460
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+
"""
|
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1461
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+
The Unified Code for Units of Measure (UCUM) representation of millimeters per year.
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1462
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+
"""
|
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1463
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+
cm2 = "cm2"
|
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1464
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+
"""
|
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1465
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+
The Unified Code for Units of Measure (UCUM) representation of square centimeter.
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1466
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+
"""
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1467
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ergSOLIDUScm2SOLIDUSs = "erg/cm2/s"
|
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1468
|
+
"""
|
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1469
|
+
The Unified Code for Units of Measure (UCUM) representation of ergs per square centimeter per second.
|
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1470
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+
"""
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1471
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+
gSOLIDUSm2 = "g/m2"
|
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1472
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+
"""
|
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1473
|
+
The Unified Code for Units of Measure (UCUM) representation of grams per square meter.
|
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1474
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+
"""
|
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1475
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+
LSOLIDUSs = "L/s"
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1476
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+
"""
|
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1477
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+
The Unified Code for Units of Measure (UCUM) representation of liters per second.
|
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1478
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+
"""
|
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1479
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cm3SOLIDUScm3 = "cm3/cm3"
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1480
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+
"""
|
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1481
|
+
The Unified Code for Units of Measure (UCUM) representation of cubic centimeters per cubic centimeter.
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1482
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+
"""
|
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1483
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+
knots = "[kn_i]"
|
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1484
|
+
"""
|
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1485
|
+
The Unified Code for Units of Measure (UCUM) representation of knot (nautical miles per hour).
|
|
1486
|
+
"""
|
|
1487
|
+
m3SOLIDUSs = "m3/s"
|
|
1488
|
+
"""
|
|
1489
|
+
The Unified Code for Units of Measure (UCUM) representation of cubic meters per second.
|
|
1490
|
+
"""
|
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1491
|
+
inches = "[in_i]"
|
|
1492
|
+
"""
|
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1493
|
+
The Unified Code for Units of Measure (UCUM) representation of inch.
|
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1494
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+
"""
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1403
1495
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1404
1496
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1405
1497
|
class ExecutionResourceEnum(str, Enum):
|
|
@@ -3555,6 +3647,7 @@ class MobilePhaseSegment(ConfiguredBaseModel):
|
|
|
3555
3647
|
'from_schema': 'https://w3id.org/nmdc/nmdc'})
|
|
3556
3648
|
|
|
3557
3649
|
duration: Optional[QuantityValue] = Field(default=None, description="""The elapsed time of an activity.""", json_schema_extra = { "linkml_meta": {'alias': 'duration',
|
|
3650
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'h|min'}},
|
|
3558
3651
|
'domain_of': ['MixingProcess',
|
|
3559
3652
|
'DissolvingProcess',
|
|
3560
3653
|
'ChemicalConversionProcess',
|
|
@@ -3594,6 +3687,7 @@ class MobilePhaseSegment(ConfiguredBaseModel):
|
|
|
3594
3687
|
'literal_form': 'workflow_execution_class',
|
|
3595
3688
|
'predicate': 'NARROW_SYNONYM'}}} })
|
|
3596
3689
|
volume: Optional[QuantityValue] = Field(default=None, description="""The volume of a substance.""", json_schema_extra = { "linkml_meta": {'alias': 'volume',
|
|
3690
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'mL|uL'}},
|
|
3597
3691
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
3598
3692
|
'domain_of': ['Extraction',
|
|
3599
3693
|
'SubSamplingProcess',
|
|
@@ -3612,12 +3706,17 @@ class PortionOfSubstance(ConfiguredBaseModel):
|
|
|
3612
3706
|
'title': 'Portion of a Substance'})
|
|
3613
3707
|
|
|
3614
3708
|
final_concentration: Optional[QuantityValue] = Field(default=None, description="""When solutions A (containing substance X) and B are combined together, this slot captures the concentration of X in the combination""", json_schema_extra = { "linkml_meta": {'alias': 'final_concentration',
|
|
3709
|
+
'annotations': {'storage_units': {'tag': 'storage_units',
|
|
3710
|
+
'value': '%|mmol/L|umol/L'}},
|
|
3615
3711
|
'domain_of': ['PortionOfSubstance'],
|
|
3616
3712
|
'is_a': 'concentration'} })
|
|
3617
3713
|
mass: Optional[QuantityValue] = Field(default=None, title="mass", description="""A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.""", json_schema_extra = { "linkml_meta": {'alias': 'mass',
|
|
3714
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'g'}},
|
|
3618
3715
|
'domain_of': ['SubSamplingProcess', 'PortionOfSubstance'],
|
|
3619
3716
|
'exact_mappings': ['PATO:0000125']} })
|
|
3620
3717
|
source_concentration: Optional[QuantityValue] = Field(default=None, description="""When solutions A (containing substance X) and B are combined together, this slot captures the concentration of X in solution A""", json_schema_extra = { "linkml_meta": {'alias': 'source_concentration',
|
|
3718
|
+
'annotations': {'storage_units': {'tag': 'storage_units',
|
|
3719
|
+
'value': '%|mmol/L'}},
|
|
3621
3720
|
'domain_of': ['PortionOfSubstance'],
|
|
3622
3721
|
'is_a': 'concentration'} })
|
|
3623
3722
|
known_as: Optional[ChemicalEntityEnum] = Field(default=None, description="""The substance from which a portion was taken.""", json_schema_extra = { "linkml_meta": {'alias': 'known_as', 'domain_of': ['PortionOfSubstance']} })
|
|
@@ -3650,6 +3749,7 @@ class PortionOfSubstance(ConfiguredBaseModel):
|
|
|
3650
3749
|
'literal_form': 'workflow_execution_class',
|
|
3651
3750
|
'predicate': 'NARROW_SYNONYM'}}} })
|
|
3652
3751
|
volume: Optional[QuantityValue] = Field(default=None, description="""The volume of a substance.""", json_schema_extra = { "linkml_meta": {'alias': 'volume',
|
|
3752
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'mL|uL'}},
|
|
3653
3753
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
3654
3754
|
'domain_of': ['Extraction',
|
|
3655
3755
|
'SubSamplingProcess',
|
|
@@ -5992,7 +6092,9 @@ class Biosample(Sample):
|
|
|
5992
6092
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
5993
6093
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
5994
6094
|
'value': 'gram per gram, kilogram per '
|
|
5995
|
-
'kilogram, kilogram, pound'}
|
|
6095
|
+
'kilogram, kilogram, pound'},
|
|
6096
|
+
'storage_units': {'tag': 'storage_units',
|
|
6097
|
+
'value': '[lb_av]|g/g|kg|kg/kg'}},
|
|
5996
6098
|
'domain_of': ['Biosample'],
|
|
5997
6099
|
'examples': [{'value': '9 gram per gram'}],
|
|
5998
6100
|
'is_a': 'core field',
|
|
@@ -6077,7 +6179,8 @@ class Biosample(Sample):
|
|
|
6077
6179
|
'value': 'measurement value'},
|
|
6078
6180
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6079
6181
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6080
|
-
'value': 'degree Celsius'}
|
|
6182
|
+
'value': 'degree Celsius'},
|
|
6183
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
6081
6184
|
'domain_of': ['Biosample'],
|
|
6082
6185
|
'examples': [{'value': '20 degree Celsius'}],
|
|
6083
6186
|
'is_a': 'core field',
|
|
@@ -6101,7 +6204,8 @@ class Biosample(Sample):
|
|
|
6101
6204
|
'value': 'measurement value'},
|
|
6102
6205
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6103
6206
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6104
|
-
'value': 'percentage'}
|
|
6207
|
+
'value': 'percentage'},
|
|
6208
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
6105
6209
|
'domain_of': ['Biosample'],
|
|
6106
6210
|
'examples': [{'value': '27%'}],
|
|
6107
6211
|
'is_a': 'core field',
|
|
@@ -6134,7 +6238,9 @@ class Biosample(Sample):
|
|
|
6134
6238
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6135
6239
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6136
6240
|
'value': 'milliequivalent per liter, '
|
|
6137
|
-
'milligram per liter'}
|
|
6241
|
+
'milligram per liter'},
|
|
6242
|
+
'storage_units': {'tag': 'storage_units',
|
|
6243
|
+
'value': 'meq/L|mg/L'}},
|
|
6138
6244
|
'domain_of': ['Biosample'],
|
|
6139
6245
|
'examples': [{'value': '50 milligram per liter'}],
|
|
6140
6246
|
'is_a': 'core field',
|
|
@@ -6155,7 +6261,8 @@ class Biosample(Sample):
|
|
|
6155
6261
|
'value': 'measurement value'},
|
|
6156
6262
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6157
6263
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6158
|
-
'value': 'mole per liter'}
|
|
6264
|
+
'value': 'mole per liter'},
|
|
6265
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mol/L'}},
|
|
6159
6266
|
'domain_of': ['Biosample'],
|
|
6160
6267
|
'examples': [{'value': '0.005 mole per liter'}],
|
|
6161
6268
|
'is_a': 'core field',
|
|
@@ -6163,7 +6270,8 @@ class Biosample(Sample):
|
|
|
6163
6270
|
alt: Optional[QuantityValue] = Field(default=None, title="altitude", description="""Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air""", json_schema_extra = { "linkml_meta": {'alias': 'alt',
|
|
6164
6271
|
'aliases': ['altitude'],
|
|
6165
6272
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
6166
|
-
'value': 'measurement value'}
|
|
6273
|
+
'value': 'measurement value'},
|
|
6274
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
6167
6275
|
'domain_of': ['Biosample'],
|
|
6168
6276
|
'examples': [{'value': '100 meter'}],
|
|
6169
6277
|
'is_a': 'environment field',
|
|
@@ -6174,7 +6282,8 @@ class Biosample(Sample):
|
|
|
6174
6282
|
'value': 'measurement value'},
|
|
6175
6283
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6176
6284
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6177
|
-
'value': 'mole per liter per hour'}
|
|
6285
|
+
'value': 'mole per liter per hour'},
|
|
6286
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mol/L/h'}},
|
|
6178
6287
|
'domain_of': ['Biosample'],
|
|
6179
6288
|
'examples': [{'value': '0.269 mole per liter per hour'}],
|
|
6180
6289
|
'is_a': 'core field',
|
|
@@ -6186,7 +6295,9 @@ class Biosample(Sample):
|
|
|
6186
6295
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6187
6296
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6188
6297
|
'value': 'micromole per liter, milligram '
|
|
6189
|
-
'per liter, parts per million'}
|
|
6298
|
+
'per liter, parts per million'},
|
|
6299
|
+
'storage_units': {'tag': 'storage_units',
|
|
6300
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
6190
6301
|
'domain_of': ['Biosample'],
|
|
6191
6302
|
'examples': [{'value': '1.5 milligram per liter'}],
|
|
6192
6303
|
'is_a': 'core field',
|
|
@@ -6197,7 +6308,9 @@ class Biosample(Sample):
|
|
|
6197
6308
|
'value': 'measurement value'},
|
|
6198
6309
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6199
6310
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6200
|
-
'value': 'lux, lumens per square meter'}
|
|
6311
|
+
'value': 'lux, lumens per square meter'},
|
|
6312
|
+
'storage_units': {'tag': 'storage_units',
|
|
6313
|
+
'value': 'lm/m2|lx'}},
|
|
6201
6314
|
'domain_of': ['Biosample'],
|
|
6202
6315
|
'examples': [{'value': ''}],
|
|
6203
6316
|
'is_a': 'core field',
|
|
@@ -6218,7 +6331,8 @@ class Biosample(Sample):
|
|
|
6218
6331
|
'value': 'measurement value'},
|
|
6219
6332
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6220
6333
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6221
|
-
'value': 'millimeter'}
|
|
6334
|
+
'value': 'millimeter'},
|
|
6335
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mm'}},
|
|
6222
6336
|
'domain_of': ['Biosample'],
|
|
6223
6337
|
'examples': [{'value': '8.94 inch'}],
|
|
6224
6338
|
'is_a': 'core field',
|
|
@@ -6229,7 +6343,8 @@ class Biosample(Sample):
|
|
|
6229
6343
|
'value': 'measurement value'},
|
|
6230
6344
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6231
6345
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6232
|
-
'value': 'degree Celsius'}
|
|
6346
|
+
'value': 'degree Celsius'},
|
|
6347
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
6233
6348
|
'domain_of': ['Biosample'],
|
|
6234
6349
|
'examples': [{'value': '12.5 degree Celsius'}],
|
|
6235
6350
|
'is_a': 'core field',
|
|
@@ -6256,7 +6371,9 @@ class Biosample(Sample):
|
|
|
6256
6371
|
'value': 'measurement value'},
|
|
6257
6372
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6258
6373
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6259
|
-
'value': 'degrees API'}
|
|
6374
|
+
'value': 'degrees API'},
|
|
6375
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
6376
|
+
'value': 'non_ucum_unit'}},
|
|
6260
6377
|
'domain_of': ['Biosample'],
|
|
6261
6378
|
'examples': [{'value': ''}],
|
|
6262
6379
|
'is_a': 'core field',
|
|
@@ -6311,7 +6428,8 @@ class Biosample(Sample):
|
|
|
6311
6428
|
'value': 'measurement value'},
|
|
6312
6429
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6313
6430
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6314
|
-
'value': 'degree Celsius'}
|
|
6431
|
+
'value': 'degree Celsius'},
|
|
6432
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
6315
6433
|
'domain_of': ['Biosample'],
|
|
6316
6434
|
'examples': [{'value': '25.5 degree Celsius'}],
|
|
6317
6435
|
'is_a': 'core field',
|
|
@@ -6330,7 +6448,8 @@ class Biosample(Sample):
|
|
|
6330
6448
|
'value': 'measurement value'},
|
|
6331
6449
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6332
6450
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6333
|
-
'value': 'degree Celsius'}
|
|
6451
|
+
'value': 'degree Celsius'},
|
|
6452
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
6334
6453
|
'domain_of': ['Biosample'],
|
|
6335
6454
|
'examples': [{'value': '12.5 degree Celsius'}],
|
|
6336
6455
|
'is_a': 'core field',
|
|
@@ -6342,7 +6461,8 @@ class Biosample(Sample):
|
|
|
6342
6461
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6343
6462
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6344
6463
|
'value': 'milligram per cubic meter per '
|
|
6345
|
-
'day'}
|
|
6464
|
+
'day'},
|
|
6465
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/m3/d'}},
|
|
6346
6466
|
'domain_of': ['Biosample'],
|
|
6347
6467
|
'examples': [{'value': '5 milligram per cubic meter per day'}],
|
|
6348
6468
|
'is_a': 'core field',
|
|
@@ -6355,7 +6475,9 @@ class Biosample(Sample):
|
|
|
6355
6475
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6356
6476
|
'value': 'milligram per cubic meter per '
|
|
6357
6477
|
'day, micromole oxygen per liter '
|
|
6358
|
-
'per hour'}
|
|
6478
|
+
'per hour'},
|
|
6479
|
+
'storage_units': {'tag': 'storage_units',
|
|
6480
|
+
'value': 'mg/m3/d|umol/L/h'}},
|
|
6359
6481
|
'domain_of': ['Biosample'],
|
|
6360
6482
|
'examples': [{'value': '300 micromole oxygen per liter per hour'}],
|
|
6361
6483
|
'is_a': 'core field',
|
|
@@ -6366,7 +6488,8 @@ class Biosample(Sample):
|
|
|
6366
6488
|
'value': 'measurement value'},
|
|
6367
6489
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6368
6490
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6369
|
-
'value': 'nanogram per hour'}
|
|
6491
|
+
'value': 'nanogram per hour'},
|
|
6492
|
+
'storage_units': {'tag': 'storage_units', 'value': 'ng/h'}},
|
|
6370
6493
|
'domain_of': ['Biosample'],
|
|
6371
6494
|
'examples': [{'value': '2.53 microgram per liter per hour'}],
|
|
6372
6495
|
'is_a': 'core field',
|
|
@@ -6377,7 +6500,8 @@ class Biosample(Sample):
|
|
|
6377
6500
|
'value': 'measurement value'},
|
|
6378
6501
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6379
6502
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6380
|
-
'value': 'millibar'}
|
|
6503
|
+
'value': 'millibar'},
|
|
6504
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mbar'}},
|
|
6381
6505
|
'domain_of': ['Biosample'],
|
|
6382
6506
|
'examples': [{'value': '5 millibar'}],
|
|
6383
6507
|
'is_a': 'core field',
|
|
@@ -6414,7 +6538,9 @@ class Biosample(Sample):
|
|
|
6414
6538
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6415
6539
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6416
6540
|
'value': 'milligram per liter, parts per '
|
|
6417
|
-
'million'}
|
|
6541
|
+
'million'},
|
|
6542
|
+
'storage_units': {'tag': 'storage_units',
|
|
6543
|
+
'value': '[ppm]|mg/L'}},
|
|
6418
6544
|
'domain_of': ['Biosample'],
|
|
6419
6545
|
'examples': [{'value': ''}],
|
|
6420
6546
|
'is_a': 'core field',
|
|
@@ -6425,7 +6551,8 @@ class Biosample(Sample):
|
|
|
6425
6551
|
'value': 'measurement value'},
|
|
6426
6552
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6427
6553
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6428
|
-
'value': 'milligram per liter'}
|
|
6554
|
+
'value': 'milligram per liter'},
|
|
6555
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
6429
6556
|
'domain_of': ['Biosample'],
|
|
6430
6557
|
'examples': [{'value': ''}],
|
|
6431
6558
|
'is_a': 'core field',
|
|
@@ -6500,7 +6627,9 @@ class Biosample(Sample):
|
|
|
6500
6627
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6501
6628
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6502
6629
|
'value': 'microgram per liter, microgram '
|
|
6503
|
-
'per gram'}
|
|
6630
|
+
'per gram'},
|
|
6631
|
+
'storage_units': {'tag': 'storage_units',
|
|
6632
|
+
'value': 'ug/L|ug/g'}},
|
|
6504
6633
|
'domain_of': ['Biosample'],
|
|
6505
6634
|
'examples': [{'value': '14 microgram per liter'}],
|
|
6506
6635
|
'is_a': 'core field',
|
|
@@ -6511,7 +6640,8 @@ class Biosample(Sample):
|
|
|
6511
6640
|
'value': 'measurement value'},
|
|
6512
6641
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6513
6642
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6514
|
-
'value': 'millimeter mercury'}
|
|
6643
|
+
'value': 'millimeter mercury'},
|
|
6644
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mm[Hg]'}},
|
|
6515
6645
|
'domain_of': ['Biosample'],
|
|
6516
6646
|
'examples': [{'value': ''}],
|
|
6517
6647
|
'is_a': 'core field',
|
|
@@ -6522,7 +6652,8 @@ class Biosample(Sample):
|
|
|
6522
6652
|
'value': 'measurement value'},
|
|
6523
6653
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6524
6654
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6525
|
-
'value': 'millimeter mercury'}
|
|
6655
|
+
'value': 'millimeter mercury'},
|
|
6656
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mm[Hg]'}},
|
|
6526
6657
|
'domain_of': ['Biosample'],
|
|
6527
6658
|
'examples': [{'value': ''}],
|
|
6528
6659
|
'is_a': 'core field',
|
|
@@ -6533,7 +6664,8 @@ class Biosample(Sample):
|
|
|
6533
6664
|
'value': 'measurement value'},
|
|
6534
6665
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6535
6666
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6536
|
-
'value': 'parts per million'}
|
|
6667
|
+
'value': 'parts per million'},
|
|
6668
|
+
'storage_units': {'tag': 'storage_units', 'value': '[ppm]'}},
|
|
6537
6669
|
'domain_of': ['Biosample'],
|
|
6538
6670
|
'examples': [{'value': '0.05 parts per million'}],
|
|
6539
6671
|
'is_a': 'core field',
|
|
@@ -6569,7 +6701,8 @@ class Biosample(Sample):
|
|
|
6569
6701
|
'aliases': ['built structure age'],
|
|
6570
6702
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
6571
6703
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6572
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'year'}
|
|
6704
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'year'},
|
|
6705
|
+
'storage_units': {'tag': 'storage_units', 'value': 'a'}},
|
|
6573
6706
|
'domain_of': ['Biosample'],
|
|
6574
6707
|
'examples': [{'value': '15'}],
|
|
6575
6708
|
'is_a': 'core field',
|
|
@@ -6601,7 +6734,9 @@ class Biosample(Sample):
|
|
|
6601
6734
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6602
6735
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6603
6736
|
'value': 'milligram per liter, micromole '
|
|
6604
|
-
'per liter, parts per million'}
|
|
6737
|
+
'per liter, parts per million'},
|
|
6738
|
+
'storage_units': {'tag': 'storage_units',
|
|
6739
|
+
'value': '[ppm]|mg/L|umol/L|mg/kg'}},
|
|
6605
6740
|
'domain_of': ['Biosample'],
|
|
6606
6741
|
'examples': [{'value': '0.2 micromole per liter'}],
|
|
6607
6742
|
'is_a': 'core field',
|
|
@@ -6613,7 +6748,9 @@ class Biosample(Sample):
|
|
|
6613
6748
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6614
6749
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6615
6750
|
'value': 'micromole per liter, parts per '
|
|
6616
|
-
'million'}
|
|
6751
|
+
'million'},
|
|
6752
|
+
'storage_units': {'tag': 'storage_units',
|
|
6753
|
+
'value': '[ppm]|umol/L'}},
|
|
6617
6754
|
'domain_of': ['Biosample'],
|
|
6618
6755
|
'examples': [{'value': '410 parts per million'}],
|
|
6619
6756
|
'is_a': 'core field',
|
|
@@ -6625,7 +6762,9 @@ class Biosample(Sample):
|
|
|
6625
6762
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6626
6763
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6627
6764
|
'value': 'micromole per liter, parts per '
|
|
6628
|
-
'million'}
|
|
6765
|
+
'million'},
|
|
6766
|
+
'storage_units': {'tag': 'storage_units',
|
|
6767
|
+
'value': '[ppm]|umol/L'}},
|
|
6629
6768
|
'domain_of': ['Biosample'],
|
|
6630
6769
|
'examples': [{'value': '0.1 parts per million'}],
|
|
6631
6770
|
'is_a': 'core field',
|
|
@@ -6634,7 +6773,8 @@ class Biosample(Sample):
|
|
|
6634
6773
|
'aliases': ['carbon/nitrogen ratio'],
|
|
6635
6774
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
6636
6775
|
'value': 'measurement value'},
|
|
6637
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
6776
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6777
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
6638
6778
|
'domain_of': ['Biosample'],
|
|
6639
6779
|
'examples': [{'value': '0.417361111'}],
|
|
6640
6780
|
'is_a': 'core field',
|
|
@@ -6645,7 +6785,8 @@ class Biosample(Sample):
|
|
|
6645
6785
|
'value': 'measurement value'},
|
|
6646
6786
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6647
6787
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6648
|
-
'value': 'square meter'}
|
|
6788
|
+
'value': 'square meter'},
|
|
6789
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
6649
6790
|
'domain_of': ['Biosample'],
|
|
6650
6791
|
'examples': [{'value': '25 square meter'}],
|
|
6651
6792
|
'is_a': 'core field',
|
|
@@ -6693,7 +6834,8 @@ class Biosample(Sample):
|
|
|
6693
6834
|
'value': 'measurement value'},
|
|
6694
6835
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6695
6836
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6696
|
-
'value': 'joule per degree Celsius'}
|
|
6837
|
+
'value': 'joule per degree Celsius'},
|
|
6838
|
+
'storage_units': {'tag': 'storage_units', 'value': 'J/K'}},
|
|
6697
6839
|
'domain_of': ['Biosample'],
|
|
6698
6840
|
'examples': [{'value': ''}],
|
|
6699
6841
|
'is_a': 'core field',
|
|
@@ -6750,7 +6892,8 @@ class Biosample(Sample):
|
|
|
6750
6892
|
'value': 'measurement value'},
|
|
6751
6893
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6752
6894
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6753
|
-
'value': 'milligram per liter'}
|
|
6895
|
+
'value': 'milligram per liter'},
|
|
6896
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
6754
6897
|
'domain_of': ['Biosample'],
|
|
6755
6898
|
'examples': [{'value': ''}],
|
|
6756
6899
|
'is_a': 'core field',
|
|
@@ -6786,7 +6929,9 @@ class Biosample(Sample):
|
|
|
6786
6929
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6787
6930
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6788
6931
|
'value': 'milligram per liter, parts per '
|
|
6789
|
-
'million'}
|
|
6932
|
+
'million'},
|
|
6933
|
+
'storage_units': {'tag': 'storage_units',
|
|
6934
|
+
'value': '[ppm]|mg/L'}},
|
|
6790
6935
|
'domain_of': ['Biosample'],
|
|
6791
6936
|
'examples': [{'value': '5000 milligram per liter'}],
|
|
6792
6937
|
'is_a': 'core field',
|
|
@@ -6798,7 +6943,9 @@ class Biosample(Sample):
|
|
|
6798
6943
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6799
6944
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6800
6945
|
'value': 'milligram per cubic meter, '
|
|
6801
|
-
'microgram per liter'}
|
|
6946
|
+
'microgram per liter'},
|
|
6947
|
+
'storage_units': {'tag': 'storage_units',
|
|
6948
|
+
'value': 'mg/m3|ug/L'}},
|
|
6802
6949
|
'domain_of': ['Biosample'],
|
|
6803
6950
|
'examples': [{'value': '5 milligram per cubic meter'}],
|
|
6804
6951
|
'is_a': 'core field',
|
|
@@ -6833,7 +6980,9 @@ class Biosample(Sample):
|
|
|
6833
6980
|
'value': 'measurement value'},
|
|
6834
6981
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6835
6982
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6836
|
-
'value': 'milliSiemens per centimeter'}
|
|
6983
|
+
'value': 'milliSiemens per centimeter'},
|
|
6984
|
+
'storage_units': {'tag': 'storage_units',
|
|
6985
|
+
'value': 'mS/cm|uS/cm'}},
|
|
6837
6986
|
'domain_of': ['Biosample'],
|
|
6838
6987
|
'examples': [{'value': '10 milliSiemens per centimeter'}],
|
|
6839
6988
|
'is_a': 'core field',
|
|
@@ -6922,7 +7071,9 @@ class Biosample(Sample):
|
|
|
6922
7071
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6923
7072
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6924
7073
|
'value': 'gram per cubic meter, gram per '
|
|
6925
|
-
'cubic centimeter'}
|
|
7074
|
+
'cubic centimeter'},
|
|
7075
|
+
'storage_units': {'tag': 'storage_units',
|
|
7076
|
+
'value': 'g/cm3|g/m3|kg/m3'}},
|
|
6926
7077
|
'domain_of': ['Biosample'],
|
|
6927
7078
|
'examples': [{'value': '1000 kilogram per cubic meter'}],
|
|
6928
7079
|
'is_a': 'core field',
|
|
@@ -6939,7 +7090,8 @@ class Biosample(Sample):
|
|
|
6939
7090
|
depth: Optional[QuantityValue] = Field(default=None, title="depth", description="""The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.""", json_schema_extra = { "linkml_meta": {'alias': 'depth',
|
|
6940
7091
|
'aliases': ['depth'],
|
|
6941
7092
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
6942
|
-
'value': 'measurement value'}
|
|
7093
|
+
'value': 'measurement value'},
|
|
7094
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
6943
7095
|
'domain_of': ['Biosample'],
|
|
6944
7096
|
'examples': [{'value': '10 meter'}],
|
|
6945
7097
|
'is_a': 'environment field',
|
|
@@ -6950,7 +7102,8 @@ class Biosample(Sample):
|
|
|
6950
7102
|
'value': 'measurement value'},
|
|
6951
7103
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6952
7104
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6953
|
-
'value': 'degree Celsius'}
|
|
7105
|
+
'value': 'degree Celsius'},
|
|
7106
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
6954
7107
|
'domain_of': ['Biosample'],
|
|
6955
7108
|
'examples': [{'value': '22 degree Celsius'}],
|
|
6956
7109
|
'is_a': 'core field',
|
|
@@ -6975,7 +7128,9 @@ class Biosample(Sample):
|
|
|
6975
7128
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6976
7129
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6977
7130
|
'value': 'micromole per liter, milligram '
|
|
6978
|
-
'per liter'}
|
|
7131
|
+
'per liter'},
|
|
7132
|
+
'storage_units': {'tag': 'storage_units',
|
|
7133
|
+
'value': 'mg/L|umol/L'}},
|
|
6979
7134
|
'domain_of': ['Biosample'],
|
|
6980
7135
|
'examples': [{'value': '5 milligram per liter'}],
|
|
6981
7136
|
'is_a': 'core field',
|
|
@@ -6986,7 +7141,8 @@ class Biosample(Sample):
|
|
|
6986
7141
|
'value': 'measurement value'},
|
|
6987
7142
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6988
7143
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
6989
|
-
'value': 'micromole per liter'}
|
|
7144
|
+
'value': 'micromole per liter'},
|
|
7145
|
+
'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
|
|
6990
7146
|
'domain_of': ['Biosample'],
|
|
6991
7147
|
'examples': [{'value': '0.3 micromole per liter'}],
|
|
6992
7148
|
'is_a': 'core field',
|
|
@@ -6998,7 +7154,9 @@ class Biosample(Sample):
|
|
|
6998
7154
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
6999
7155
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7000
7156
|
'value': 'microgram per liter, milligram '
|
|
7001
|
-
'per liter, parts per million'}
|
|
7157
|
+
'per liter, parts per million'},
|
|
7158
|
+
'storage_units': {'tag': 'storage_units',
|
|
7159
|
+
'value': '[ppm]|mg/L|ug/L'}},
|
|
7002
7160
|
'domain_of': ['Biosample'],
|
|
7003
7161
|
'examples': [{'value': '2059 micromole per kilogram'}],
|
|
7004
7162
|
'is_a': 'core field',
|
|
@@ -7010,7 +7168,9 @@ class Biosample(Sample):
|
|
|
7010
7168
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7011
7169
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7012
7170
|
'value': 'microgram per liter, micromole '
|
|
7013
|
-
'per liter'}
|
|
7171
|
+
'per liter'},
|
|
7172
|
+
'storage_units': {'tag': 'storage_units',
|
|
7173
|
+
'value': 'ug/L|umol/L|mg/L'}},
|
|
7014
7174
|
'domain_of': ['Biosample'],
|
|
7015
7175
|
'examples': [{'value': '761 micromole per liter'}],
|
|
7016
7176
|
'is_a': 'core field',
|
|
@@ -7022,7 +7182,9 @@ class Biosample(Sample):
|
|
|
7022
7182
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7023
7183
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7024
7184
|
'value': 'microgram per liter, milligram '
|
|
7025
|
-
'per liter, parts per million'}
|
|
7185
|
+
'per liter, parts per million'},
|
|
7186
|
+
'storage_units': {'tag': 'storage_units',
|
|
7187
|
+
'value': '[ppm]|mg/L|ug/L'}},
|
|
7026
7188
|
'domain_of': ['Biosample'],
|
|
7027
7189
|
'examples': [{'value': '56.5 micromole per liter'}],
|
|
7028
7190
|
'is_a': 'core field',
|
|
@@ -7033,7 +7195,8 @@ class Biosample(Sample):
|
|
|
7033
7195
|
'value': 'measurement value'},
|
|
7034
7196
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7035
7197
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7036
|
-
'value': 'milligram per liter'}
|
|
7198
|
+
'value': 'milligram per liter'},
|
|
7199
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
7037
7200
|
'domain_of': ['Biosample'],
|
|
7038
7201
|
'examples': [{'value': ''}],
|
|
7039
7202
|
'is_a': 'core field',
|
|
@@ -7045,7 +7208,9 @@ class Biosample(Sample):
|
|
|
7045
7208
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7046
7209
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7047
7210
|
'value': 'micromole per liter, milligram '
|
|
7048
|
-
'per liter'}
|
|
7211
|
+
'per liter'},
|
|
7212
|
+
'storage_units': {'tag': 'storage_units',
|
|
7213
|
+
'value': 'mg/L|umol/L|ug/L'}},
|
|
7049
7214
|
'domain_of': ['Biosample'],
|
|
7050
7215
|
'examples': [{'value': '197 micromole per liter'}],
|
|
7051
7216
|
'is_a': 'core field',
|
|
@@ -7057,7 +7222,9 @@ class Biosample(Sample):
|
|
|
7057
7222
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7058
7223
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7059
7224
|
'value': 'microgram per liter, milligram '
|
|
7060
|
-
'per liter'}
|
|
7225
|
+
'per liter'},
|
|
7226
|
+
'storage_units': {'tag': 'storage_units',
|
|
7227
|
+
'value': 'mg/L|ug/L'}},
|
|
7061
7228
|
'domain_of': ['Biosample'],
|
|
7062
7229
|
'examples': [{'value': '0.05 micromole per liter'}],
|
|
7063
7230
|
'is_a': 'core field',
|
|
@@ -7069,7 +7236,9 @@ class Biosample(Sample):
|
|
|
7069
7236
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7070
7237
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7071
7238
|
'value': 'micromole per kilogram, '
|
|
7072
|
-
'milligram per liter'}
|
|
7239
|
+
'milligram per liter'},
|
|
7240
|
+
'storage_units': {'tag': 'storage_units',
|
|
7241
|
+
'value': 'mg/L|umol/kg|umol/L'}},
|
|
7073
7242
|
'domain_of': ['Biosample'],
|
|
7074
7243
|
'examples': [{'value': '175 micromole per kilogram'}],
|
|
7075
7244
|
'is_a': 'core field',
|
|
@@ -7081,7 +7250,9 @@ class Biosample(Sample):
|
|
|
7081
7250
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7082
7251
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7083
7252
|
'value': 'micromole per kilogram, '
|
|
7084
|
-
'milligram per liter'}
|
|
7253
|
+
'milligram per liter'},
|
|
7254
|
+
'storage_units': {'tag': 'storage_units',
|
|
7255
|
+
'value': 'mg/L|umol/kg'}},
|
|
7085
7256
|
'domain_of': ['Biosample'],
|
|
7086
7257
|
'examples': [{'value': ''}],
|
|
7087
7258
|
'is_a': 'core field',
|
|
@@ -7146,7 +7317,8 @@ class Biosample(Sample):
|
|
|
7146
7317
|
'value': 'measurement value'},
|
|
7147
7318
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7148
7319
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7149
|
-
'value': 'square meter'}
|
|
7320
|
+
'value': 'square meter'},
|
|
7321
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
7150
7322
|
'domain_of': ['Biosample'],
|
|
7151
7323
|
'examples': [{'value': '2.5 square meter'}],
|
|
7152
7324
|
'is_a': 'core field',
|
|
@@ -7197,7 +7369,9 @@ class Biosample(Sample):
|
|
|
7197
7369
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7198
7370
|
'value': 'microEinstein per square meter '
|
|
7199
7371
|
'per second, microEinstein per '
|
|
7200
|
-
'square centimeter per second'}
|
|
7372
|
+
'square centimeter per second'},
|
|
7373
|
+
'storage_units': {'tag': 'storage_units',
|
|
7374
|
+
'value': 'umol/m2/s'}},
|
|
7201
7375
|
'domain_of': ['Biosample'],
|
|
7202
7376
|
'examples': [{'value': '28.71 microEinstein per square meter per second'}],
|
|
7203
7377
|
'is_a': 'core field',
|
|
@@ -7226,7 +7400,9 @@ class Biosample(Sample):
|
|
|
7226
7400
|
'value': 'measurement value'},
|
|
7227
7401
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7228
7402
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7229
|
-
'value': 'micromole per liter'}
|
|
7403
|
+
'value': 'micromole per liter'},
|
|
7404
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
7405
|
+
'value': 'mixs_inconsistent'}},
|
|
7230
7406
|
'domain_of': ['Biosample'],
|
|
7231
7407
|
'examples': [{'value': ''}],
|
|
7232
7408
|
'is_a': 'core field',
|
|
@@ -7364,7 +7540,9 @@ class Biosample(Sample):
|
|
|
7364
7540
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7365
7541
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7366
7542
|
'value': 'milligram per liter, parts per '
|
|
7367
|
-
'million'}
|
|
7543
|
+
'million'},
|
|
7544
|
+
'storage_units': {'tag': 'storage_units',
|
|
7545
|
+
'value': '[ppm]|mg/L'}},
|
|
7368
7546
|
'domain_of': ['Biosample'],
|
|
7369
7547
|
'examples': [{'value': ''}],
|
|
7370
7548
|
'is_a': 'core field',
|
|
@@ -7375,7 +7553,8 @@ class Biosample(Sample):
|
|
|
7375
7553
|
'value': 'measurement value'},
|
|
7376
7554
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7377
7555
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7378
|
-
'value': 'square meter'}
|
|
7556
|
+
'value': 'square meter'},
|
|
7557
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
7379
7558
|
'domain_of': ['Biosample'],
|
|
7380
7559
|
'examples': [{'value': ''}],
|
|
7381
7560
|
'is_a': 'core field',
|
|
@@ -7384,7 +7563,9 @@ class Biosample(Sample):
|
|
|
7384
7563
|
'aliases': ['exposed pipes'],
|
|
7385
7564
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
7386
7565
|
'value': 'measurement value'},
|
|
7387
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
7566
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7567
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
7568
|
+
'value': 'pending_analysis'}},
|
|
7388
7569
|
'domain_of': ['Biosample'],
|
|
7389
7570
|
'examples': [{'value': ''}],
|
|
7390
7571
|
'is_a': 'core field',
|
|
@@ -7516,7 +7697,8 @@ class Biosample(Sample):
|
|
|
7516
7697
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
7517
7698
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7518
7699
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7519
|
-
'value': 'years, weeks, days'}
|
|
7700
|
+
'value': 'years, weeks, days'},
|
|
7701
|
+
'storage_units': {'tag': 'storage_units', 'value': 'a|d|wk'}},
|
|
7520
7702
|
'domain_of': ['Biosample'],
|
|
7521
7703
|
'examples': [{'value': ''}],
|
|
7522
7704
|
'is_a': 'core field',
|
|
@@ -7527,7 +7709,8 @@ class Biosample(Sample):
|
|
|
7527
7709
|
'value': 'measurement value'},
|
|
7528
7710
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7529
7711
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7530
|
-
'value': 'square meter'}
|
|
7712
|
+
'value': 'square meter'},
|
|
7713
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
7531
7714
|
'domain_of': ['Biosample'],
|
|
7532
7715
|
'examples': [{'value': ''}],
|
|
7533
7716
|
'is_a': 'core field',
|
|
@@ -7573,7 +7756,8 @@ class Biosample(Sample):
|
|
|
7573
7756
|
'value': 'measurement value'},
|
|
7574
7757
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7575
7758
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7576
|
-
'value': 'joule per degree Celsius'}
|
|
7759
|
+
'value': 'joule per degree Celsius'},
|
|
7760
|
+
'storage_units': {'tag': 'storage_units', 'value': 'J/K'}},
|
|
7577
7761
|
'domain_of': ['Biosample'],
|
|
7578
7762
|
'examples': [{'value': ''}],
|
|
7579
7763
|
'is_a': 'core field',
|
|
@@ -7594,7 +7778,8 @@ class Biosample(Sample):
|
|
|
7594
7778
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7595
7779
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7596
7780
|
'value': 'milligram chlorophyll a per '
|
|
7597
|
-
'cubic meter, volts'}
|
|
7781
|
+
'cubic meter, volts'},
|
|
7782
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/m3'}},
|
|
7598
7783
|
'domain_of': ['Biosample'],
|
|
7599
7784
|
'examples': [{'value': '2.5 volts'}],
|
|
7600
7785
|
'is_a': 'core field',
|
|
@@ -7603,7 +7788,8 @@ class Biosample(Sample):
|
|
|
7603
7788
|
'aliases': ['frequency of cleaning'],
|
|
7604
7789
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
7605
7790
|
'value': 'enumeration or {text}'},
|
|
7606
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
7791
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7792
|
+
'storage_units': {'tag': 'storage_units', 'value': '1/d'}},
|
|
7607
7793
|
'domain_of': ['Biosample'],
|
|
7608
7794
|
'examples': [{'value': ''}],
|
|
7609
7795
|
'is_a': 'core field',
|
|
@@ -7612,7 +7798,8 @@ class Biosample(Sample):
|
|
|
7612
7798
|
'aliases': ['frequency of cooking'],
|
|
7613
7799
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
7614
7800
|
'value': 'measurement value'},
|
|
7615
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
7801
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7802
|
+
'storage_units': {'tag': 'storage_units', 'value': '1/d'}},
|
|
7616
7803
|
'domain_of': ['Biosample'],
|
|
7617
7804
|
'examples': [{'value': ''}],
|
|
7618
7805
|
'is_a': 'core field',
|
|
@@ -7714,7 +7901,8 @@ class Biosample(Sample):
|
|
|
7714
7901
|
'value': 'measurement value'},
|
|
7715
7902
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7716
7903
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7717
|
-
'value': 'mol per liter per hour'}
|
|
7904
|
+
'value': 'mol per liter per hour'},
|
|
7905
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mol/L/h'}},
|
|
7718
7906
|
'domain_of': ['Biosample'],
|
|
7719
7907
|
'examples': [{'value': '5 mol per liter per hour'}],
|
|
7720
7908
|
'is_a': 'core field',
|
|
@@ -7819,7 +8007,8 @@ class Biosample(Sample):
|
|
|
7819
8007
|
'value': 'measurement value'},
|
|
7820
8008
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7821
8009
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7822
|
-
'value': 'milligram per liter'}
|
|
8010
|
+
'value': 'milligram per liter'},
|
|
8011
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
7823
8012
|
'domain_of': ['Biosample'],
|
|
7824
8013
|
'examples': [{'value': ''}],
|
|
7825
8014
|
'is_a': 'core field',
|
|
@@ -7934,7 +8123,8 @@ class Biosample(Sample):
|
|
|
7934
8123
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
7935
8124
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7936
8125
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7937
|
-
'value': 'centimeter'}
|
|
8126
|
+
'value': 'centimeter'},
|
|
8127
|
+
'storage_units': {'tag': 'storage_units', 'value': 'cm'}},
|
|
7938
8128
|
'domain_of': ['Biosample'],
|
|
7939
8129
|
'examples': [{'value': ''}],
|
|
7940
8130
|
'is_a': 'core field',
|
|
@@ -7971,7 +8161,8 @@ class Biosample(Sample):
|
|
|
7971
8161
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
7972
8162
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
7973
8163
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
7974
|
-
'value': 'year, day, hour'}
|
|
8164
|
+
'value': 'year, day, hour'},
|
|
8165
|
+
'storage_units': {'tag': 'storage_units', 'value': 'a|d|h'}},
|
|
7975
8166
|
'domain_of': ['Biosample'],
|
|
7976
8167
|
'examples': [{'value': '10 days'}],
|
|
7977
8168
|
'is_a': 'core field',
|
|
@@ -8012,7 +8203,8 @@ class Biosample(Sample):
|
|
|
8012
8203
|
'value': 'measurement value'},
|
|
8013
8204
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8014
8205
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8015
|
-
'value': 'degree Celsius'}
|
|
8206
|
+
'value': 'degree Celsius'},
|
|
8207
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
8016
8208
|
'domain_of': ['Biosample'],
|
|
8017
8209
|
'examples': [{'value': '15 degree Celsius'}],
|
|
8018
8210
|
'is_a': 'core field',
|
|
@@ -8052,7 +8244,8 @@ class Biosample(Sample):
|
|
|
8052
8244
|
'value': 'measurement value'},
|
|
8053
8245
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8054
8246
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8055
|
-
'value': 'kilogram, gram'}
|
|
8247
|
+
'value': 'kilogram, gram'},
|
|
8248
|
+
'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
|
|
8056
8249
|
'domain_of': ['Biosample'],
|
|
8057
8250
|
'examples': [{'value': '500 gram'}],
|
|
8058
8251
|
'is_a': 'core field',
|
|
@@ -8094,7 +8287,8 @@ class Biosample(Sample):
|
|
|
8094
8287
|
'value': 'measurement value'},
|
|
8095
8288
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8096
8289
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8097
|
-
'value': 'centimeter, millimeter, meter'}
|
|
8290
|
+
'value': 'centimeter, millimeter, meter'},
|
|
8291
|
+
'storage_units': {'tag': 'storage_units', 'value': 'cm|m|mm'}},
|
|
8098
8292
|
'domain_of': ['Biosample'],
|
|
8099
8293
|
'examples': [{'value': '0.1 meter'}],
|
|
8100
8294
|
'is_a': 'core field',
|
|
@@ -8115,7 +8309,8 @@ class Biosample(Sample):
|
|
|
8115
8309
|
'value': 'measurement value'},
|
|
8116
8310
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8117
8311
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8118
|
-
'value': 'centimeter, millimeter, meter'}
|
|
8312
|
+
'value': 'centimeter, millimeter, meter'},
|
|
8313
|
+
'storage_units': {'tag': 'storage_units', 'value': 'cm|m|mm'}},
|
|
8119
8314
|
'domain_of': ['Biosample'],
|
|
8120
8315
|
'examples': [{'value': '1 meter'}],
|
|
8121
8316
|
'is_a': 'core field',
|
|
@@ -8218,7 +8413,8 @@ class Biosample(Sample):
|
|
|
8218
8413
|
'value': 'measurement value'},
|
|
8219
8414
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8220
8415
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8221
|
-
'value': 'kilogram, gram'}
|
|
8416
|
+
'value': 'kilogram, gram'},
|
|
8417
|
+
'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
|
|
8222
8418
|
'domain_of': ['Biosample'],
|
|
8223
8419
|
'examples': [{'value': '2500 gram'}],
|
|
8224
8420
|
'is_a': 'core field',
|
|
@@ -8229,7 +8425,8 @@ class Biosample(Sample):
|
|
|
8229
8425
|
'value': 'measurement value'},
|
|
8230
8426
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8231
8427
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8232
|
-
'value': 'kilogram, gram'}
|
|
8428
|
+
'value': 'kilogram, gram'},
|
|
8429
|
+
'storage_units': {'tag': 'storage_units', 'value': 'g|kg'}},
|
|
8233
8430
|
'domain_of': ['Biosample'],
|
|
8234
8431
|
'examples': [{'value': '1500 gram'}],
|
|
8235
8432
|
'is_a': 'core field',
|
|
@@ -8240,7 +8437,8 @@ class Biosample(Sample):
|
|
|
8240
8437
|
'value': 'measurement value'},
|
|
8241
8438
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8242
8439
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8243
|
-
'value': 'gram per cubic meter'}
|
|
8440
|
+
'value': 'gram per cubic meter'},
|
|
8441
|
+
'storage_units': {'tag': 'storage_units', 'value': 'g/m3|%'}},
|
|
8244
8442
|
'domain_of': ['Biosample'],
|
|
8245
8443
|
'examples': [{'value': '25 gram per cubic meter'}],
|
|
8246
8444
|
'is_a': 'core field',
|
|
@@ -8283,7 +8481,8 @@ class Biosample(Sample):
|
|
|
8283
8481
|
'value': 'measurement value'},
|
|
8284
8482
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8285
8483
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8286
|
-
'value': 'percentage'}
|
|
8484
|
+
'value': 'percentage'},
|
|
8485
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
8287
8486
|
'domain_of': ['Biosample'],
|
|
8288
8487
|
'examples': [{'value': ''}],
|
|
8289
8488
|
'is_a': 'core field',
|
|
@@ -8308,7 +8507,9 @@ class Biosample(Sample):
|
|
|
8308
8507
|
'value': 'measurement value'},
|
|
8309
8508
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8310
8509
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8311
|
-
'value': 'kilowatt per square metre'}
|
|
8510
|
+
'value': 'kilowatt per square metre'},
|
|
8511
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
8512
|
+
'value': 'mixs_inconsistent'}},
|
|
8312
8513
|
'domain_of': ['Biosample'],
|
|
8313
8514
|
'examples': [{'value': ''}],
|
|
8314
8515
|
'is_a': 'core field',
|
|
@@ -8337,7 +8538,8 @@ class Biosample(Sample):
|
|
|
8337
8538
|
'value': 'measurement value'},
|
|
8338
8539
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8339
8540
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8340
|
-
'value': 'percent'}
|
|
8541
|
+
'value': 'percent'},
|
|
8542
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
8341
8543
|
'domain_of': ['Biosample'],
|
|
8342
8544
|
'examples': [{'value': ''}],
|
|
8343
8545
|
'is_a': 'core field',
|
|
@@ -8368,7 +8570,8 @@ class Biosample(Sample):
|
|
|
8368
8570
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8369
8571
|
'value': 'measurement value'},
|
|
8370
8572
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8371
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'lux'}
|
|
8573
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'lux'},
|
|
8574
|
+
'storage_units': {'tag': 'storage_units', 'value': 'lx'}},
|
|
8372
8575
|
'domain_of': ['Biosample'],
|
|
8373
8576
|
'examples': [{'value': '0.3 lux'}],
|
|
8374
8577
|
'is_a': 'core field',
|
|
@@ -8463,7 +8666,9 @@ class Biosample(Sample):
|
|
|
8463
8666
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8464
8667
|
'value': 'mole per liter, milligram per '
|
|
8465
8668
|
'liter, parts per million, '
|
|
8466
|
-
'micromole per kilogram'}
|
|
8669
|
+
'micromole per kilogram'},
|
|
8670
|
+
'storage_units': {'tag': 'storage_units',
|
|
8671
|
+
'value': '[ppm]|mg/L|mol/L|umol/kg|mg/kg'}},
|
|
8467
8672
|
'domain_of': ['Biosample'],
|
|
8468
8673
|
'examples': [{'value': '52.8 micromole per kilogram'}],
|
|
8469
8674
|
'is_a': 'core field',
|
|
@@ -8472,7 +8677,8 @@ class Biosample(Sample):
|
|
|
8472
8677
|
'aliases': ['maximum occupancy'],
|
|
8473
8678
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8474
8679
|
'value': 'measurement value'},
|
|
8475
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8680
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8681
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8476
8682
|
'domain_of': ['Biosample'],
|
|
8477
8683
|
'examples': [{'value': ''}],
|
|
8478
8684
|
'is_a': 'core field',
|
|
@@ -8483,7 +8689,8 @@ class Biosample(Sample):
|
|
|
8483
8689
|
'value': 'measurement value'},
|
|
8484
8690
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8485
8691
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8486
|
-
'value': 'meter per second'}
|
|
8692
|
+
'value': 'meter per second'},
|
|
8693
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm/s'}},
|
|
8487
8694
|
'domain_of': ['Biosample'],
|
|
8488
8695
|
'examples': [{'value': '0.5 meter per second'}],
|
|
8489
8696
|
'is_a': 'core field',
|
|
@@ -8494,7 +8701,8 @@ class Biosample(Sample):
|
|
|
8494
8701
|
'value': 'measurement value'},
|
|
8495
8702
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8496
8703
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8497
|
-
'value': 'meter per second'}
|
|
8704
|
+
'value': 'meter per second'},
|
|
8705
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm/s'}},
|
|
8498
8706
|
'domain_of': ['Biosample'],
|
|
8499
8707
|
'examples': [{'value': '1 meter per second'}],
|
|
8500
8708
|
'is_a': 'core field',
|
|
@@ -8525,7 +8733,9 @@ class Biosample(Sample):
|
|
|
8525
8733
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8526
8734
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8527
8735
|
'value': 'micromole per liter, parts per '
|
|
8528
|
-
'billion, parts per million'}
|
|
8736
|
+
'billion, parts per million'},
|
|
8737
|
+
'storage_units': {'tag': 'storage_units',
|
|
8738
|
+
'value': '[ppb]|[ppm]|umol/L'}},
|
|
8529
8739
|
'domain_of': ['Biosample'],
|
|
8530
8740
|
'examples': [{'value': '1800 parts per billion'}],
|
|
8531
8741
|
'is_a': 'core field',
|
|
@@ -8547,7 +8757,9 @@ class Biosample(Sample):
|
|
|
8547
8757
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8548
8758
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8549
8759
|
'value': 'ton, kilogram, gram per kilogram '
|
|
8550
|
-
'soil'}
|
|
8760
|
+
'soil'},
|
|
8761
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
8762
|
+
'value': 'complex_unit'}},
|
|
8551
8763
|
'domain_of': ['Biosample'],
|
|
8552
8764
|
'examples': [{'value': ''}],
|
|
8553
8765
|
'is_a': 'core field',
|
|
@@ -8600,7 +8812,9 @@ class Biosample(Sample):
|
|
|
8600
8812
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8601
8813
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8602
8814
|
'value': 'micromole per liter, milligram '
|
|
8603
|
-
'per liter, parts per million'}
|
|
8815
|
+
'per liter, parts per million'},
|
|
8816
|
+
'storage_units': {'tag': 'storage_units',
|
|
8817
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
8604
8818
|
'domain_of': ['Biosample'],
|
|
8605
8819
|
'examples': [{'value': '65 micromole per liter'}],
|
|
8606
8820
|
'is_a': 'core field',
|
|
@@ -8612,7 +8826,9 @@ class Biosample(Sample):
|
|
|
8612
8826
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8613
8827
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8614
8828
|
'value': 'micromole per liter, milligram '
|
|
8615
|
-
'per liter, parts per million'}
|
|
8829
|
+
'per liter, parts per million'},
|
|
8830
|
+
'storage_units': {'tag': 'storage_units',
|
|
8831
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
8616
8832
|
'domain_of': ['Biosample'],
|
|
8617
8833
|
'examples': [{'value': '0.5 micromole per liter'}],
|
|
8618
8834
|
'is_a': 'core field',
|
|
@@ -8623,7 +8839,9 @@ class Biosample(Sample):
|
|
|
8623
8839
|
'value': 'measurement value'},
|
|
8624
8840
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8625
8841
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8626
|
-
'value': 'micromole per liter'}
|
|
8842
|
+
'value': 'micromole per liter'},
|
|
8843
|
+
'storage_units': {'tag': 'storage_units',
|
|
8844
|
+
'value': 'umol/L|%'}},
|
|
8627
8845
|
'domain_of': ['Biosample'],
|
|
8628
8846
|
'examples': [{'value': '4.2 micromole per liter'}],
|
|
8629
8847
|
'is_a': 'core field',
|
|
@@ -8650,7 +8868,8 @@ class Biosample(Sample):
|
|
|
8650
8868
|
'aliases': ['number of pets'],
|
|
8651
8869
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8652
8870
|
'value': 'measurement value'},
|
|
8653
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8871
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8872
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8654
8873
|
'domain_of': ['Biosample'],
|
|
8655
8874
|
'examples': [{'value': ''}],
|
|
8656
8875
|
'is_a': 'core field',
|
|
@@ -8659,7 +8878,8 @@ class Biosample(Sample):
|
|
|
8659
8878
|
'aliases': ['number of houseplants'],
|
|
8660
8879
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8661
8880
|
'value': 'measurement value'},
|
|
8662
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8881
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8882
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8663
8883
|
'domain_of': ['Biosample'],
|
|
8664
8884
|
'examples': [{'value': ''}],
|
|
8665
8885
|
'is_a': 'core field',
|
|
@@ -8668,7 +8888,8 @@ class Biosample(Sample):
|
|
|
8668
8888
|
'aliases': ['number of residents'],
|
|
8669
8889
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8670
8890
|
'value': 'measurement value'},
|
|
8671
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8891
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8892
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8672
8893
|
'domain_of': ['Biosample'],
|
|
8673
8894
|
'examples': [{'value': ''}],
|
|
8674
8895
|
'is_a': 'core field',
|
|
@@ -8677,7 +8898,9 @@ class Biosample(Sample):
|
|
|
8677
8898
|
'aliases': ['occupant density at sampling'],
|
|
8678
8899
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8679
8900
|
'value': 'measurement value'},
|
|
8680
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8901
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8902
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
8903
|
+
'value': 'pending_analysis'}},
|
|
8681
8904
|
'domain_of': ['Biosample'],
|
|
8682
8905
|
'examples': [{'value': ''}],
|
|
8683
8906
|
'is_a': 'core field',
|
|
@@ -8695,7 +8918,8 @@ class Biosample(Sample):
|
|
|
8695
8918
|
'aliases': ['occupancy at sampling'],
|
|
8696
8919
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8697
8920
|
'value': 'measurement value'},
|
|
8698
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
8921
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8922
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8699
8923
|
'domain_of': ['Biosample'],
|
|
8700
8924
|
'examples': [{'value': '10'}],
|
|
8701
8925
|
'is_a': 'core field',
|
|
@@ -8706,7 +8930,9 @@ class Biosample(Sample):
|
|
|
8706
8930
|
'value': 'measurement value'},
|
|
8707
8931
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8708
8932
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8709
|
-
'value': 'micromole per liter'}
|
|
8933
|
+
'value': 'micromole per liter'},
|
|
8934
|
+
'storage_units': {'tag': 'storage_units',
|
|
8935
|
+
'value': 'umol/L|%'}},
|
|
8710
8936
|
'domain_of': ['Biosample'],
|
|
8711
8937
|
'examples': [{'value': '1.5 microgram per liter'}],
|
|
8712
8938
|
'is_a': 'core field',
|
|
@@ -8737,7 +8963,8 @@ class Biosample(Sample):
|
|
|
8737
8963
|
'value': 'measurement value'},
|
|
8738
8964
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8739
8965
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8740
|
-
'value': 'microgram per liter'}
|
|
8966
|
+
'value': 'microgram per liter'},
|
|
8967
|
+
'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
|
|
8741
8968
|
'domain_of': ['Biosample'],
|
|
8742
8969
|
'examples': [{'value': '1.75 milligram per cubic meter'}],
|
|
8743
8970
|
'is_a': 'core field',
|
|
@@ -8748,7 +8975,8 @@ class Biosample(Sample):
|
|
|
8748
8975
|
'value': 'measurement value'},
|
|
8749
8976
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8750
8977
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8751
|
-
'value': 'microgram per liter'}
|
|
8978
|
+
'value': 'microgram per liter'},
|
|
8979
|
+
'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
|
|
8752
8980
|
'domain_of': ['Biosample'],
|
|
8753
8981
|
'examples': [{'value': '4 micromole per liter'}],
|
|
8754
8982
|
'is_a': 'core field',
|
|
@@ -8775,7 +9003,8 @@ class Biosample(Sample):
|
|
|
8775
9003
|
'value': 'number of cells per cubic meter, '
|
|
8776
9004
|
'number of cells per milliliter, '
|
|
8777
9005
|
'number of cells per cubic '
|
|
8778
|
-
'centimeter'}
|
|
9006
|
+
'centimeter'},
|
|
9007
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
8779
9008
|
'domain_of': ['Biosample'],
|
|
8780
9009
|
'examples': [{'value': 'total prokaryotes;3.5e7 cells per milliliter;qPCR'}],
|
|
8781
9010
|
'is_a': 'core field',
|
|
@@ -8785,7 +9014,8 @@ class Biosample(Sample):
|
|
|
8785
9014
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
8786
9015
|
'value': 'measurement value'},
|
|
8787
9016
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8788
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'}
|
|
9017
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
|
|
9018
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
8789
9019
|
'domain_of': ['Biosample'],
|
|
8790
9020
|
'examples': [{'value': ''}],
|
|
8791
9021
|
'is_a': 'core field',
|
|
@@ -8806,7 +9036,9 @@ class Biosample(Sample):
|
|
|
8806
9036
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8807
9037
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8808
9038
|
'value': 'milligram per liter, parts per '
|
|
8809
|
-
'million'}
|
|
9039
|
+
'million'},
|
|
9040
|
+
'storage_units': {'tag': 'storage_units',
|
|
9041
|
+
'value': '[ppm]|mg/L'}},
|
|
8810
9042
|
'domain_of': ['Biosample'],
|
|
8811
9043
|
'examples': [{'value': '600 parts per million'}],
|
|
8812
9044
|
'is_a': 'core field',
|
|
@@ -8817,7 +9049,9 @@ class Biosample(Sample):
|
|
|
8817
9049
|
'value': 'measurement value'},
|
|
8818
9050
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8819
9051
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8820
|
-
'value': 'microgram per liter'}
|
|
9052
|
+
'value': 'microgram per liter'},
|
|
9053
|
+
'storage_units': {'tag': 'storage_units',
|
|
9054
|
+
'value': 'ug/L|mg/L'}},
|
|
8821
9055
|
'domain_of': ['Biosample'],
|
|
8822
9056
|
'examples': [{'value': '1.92 micromole per liter'}],
|
|
8823
9057
|
'is_a': 'core field',
|
|
@@ -8829,7 +9063,9 @@ class Biosample(Sample):
|
|
|
8829
9063
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8830
9064
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8831
9065
|
'value': 'microgram per liter, micromole '
|
|
8832
|
-
'per liter'}
|
|
9066
|
+
'per liter'},
|
|
9067
|
+
'storage_units': {'tag': 'storage_units',
|
|
9068
|
+
'value': 'ug/L|umol/L|mg/L'}},
|
|
8833
9069
|
'domain_of': ['Biosample'],
|
|
8834
9070
|
'examples': [{'value': '0.3 micromole per liter'}],
|
|
8835
9071
|
'is_a': 'core field',
|
|
@@ -8893,7 +9129,8 @@ class Biosample(Sample):
|
|
|
8893
9129
|
'value': 'measurement value'},
|
|
8894
9130
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8895
9131
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8896
|
-
'value': 'micromole per liter'}
|
|
9132
|
+
'value': 'micromole per liter'},
|
|
9133
|
+
'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
|
|
8897
9134
|
'domain_of': ['Biosample'],
|
|
8898
9135
|
'examples': [{'value': '0.05 micromole per liter'}],
|
|
8899
9136
|
'is_a': 'core field',
|
|
@@ -8950,7 +9187,8 @@ class Biosample(Sample):
|
|
|
8950
9187
|
'value': 'measurement value'},
|
|
8951
9188
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8952
9189
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8953
|
-
'value': 'micromole per liter'}
|
|
9190
|
+
'value': 'micromole per liter'},
|
|
9191
|
+
'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
|
|
8954
9192
|
'domain_of': ['Biosample'],
|
|
8955
9193
|
'examples': [{'value': '0.7 micromole per liter'}],
|
|
8956
9194
|
'is_a': 'core field',
|
|
@@ -8975,7 +9213,9 @@ class Biosample(Sample):
|
|
|
8975
9213
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
8976
9214
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
8977
9215
|
'value': 'number of photons per second per '
|
|
8978
|
-
'unit area'}
|
|
9216
|
+
'unit area'},
|
|
9217
|
+
'storage_units': {'tag': 'storage_units',
|
|
9218
|
+
'value': 'umol/m2/s'}},
|
|
8979
9219
|
'domain_of': ['Biosample'],
|
|
8980
9220
|
'examples': [{'value': '3.926 micromole photons per second per square meter'}],
|
|
8981
9221
|
'is_a': 'core field',
|
|
@@ -9051,7 +9291,9 @@ class Biosample(Sample):
|
|
|
9051
9291
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9052
9292
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9053
9293
|
'value': 'milligram per liter, parts per '
|
|
9054
|
-
'million'}
|
|
9294
|
+
'million'},
|
|
9295
|
+
'storage_units': {'tag': 'storage_units',
|
|
9296
|
+
'value': '[ppm]|mg/L|mg/kg'}},
|
|
9055
9297
|
'domain_of': ['Biosample'],
|
|
9056
9298
|
'examples': [{'value': '463 milligram per liter'}],
|
|
9057
9299
|
'is_a': 'core field',
|
|
@@ -9062,7 +9304,8 @@ class Biosample(Sample):
|
|
|
9062
9304
|
'value': 'measurement value'},
|
|
9063
9305
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9064
9306
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9065
|
-
'value': 'degree Celsius'}
|
|
9307
|
+
'value': 'degree Celsius'},
|
|
9308
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
9066
9309
|
'domain_of': ['Biosample'],
|
|
9067
9310
|
'examples': [{'value': ''}],
|
|
9068
9311
|
'is_a': 'core field',
|
|
@@ -9092,7 +9335,8 @@ class Biosample(Sample):
|
|
|
9092
9335
|
'value': 'measurement value'},
|
|
9093
9336
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9094
9337
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9095
|
-
'value': 'atmosphere'}
|
|
9338
|
+
'value': 'atmosphere'},
|
|
9339
|
+
'storage_units': {'tag': 'storage_units', 'value': 'atm'}},
|
|
9096
9340
|
'domain_of': ['Biosample'],
|
|
9097
9341
|
'examples': [{'value': '50 atmosphere'}],
|
|
9098
9342
|
'is_a': 'core field',
|
|
@@ -9125,7 +9369,9 @@ class Biosample(Sample):
|
|
|
9125
9369
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9126
9370
|
'value': 'milligram per cubic meter per '
|
|
9127
9371
|
'day, gram per square meter per '
|
|
9128
|
-
'day'}
|
|
9372
|
+
'day'},
|
|
9373
|
+
'storage_units': {'tag': 'storage_units',
|
|
9374
|
+
'value': 'g/m2/d|mg/m3/d'}},
|
|
9129
9375
|
'domain_of': ['Biosample'],
|
|
9130
9376
|
'examples': [{'value': '100 milligram per cubic meter per day'}],
|
|
9131
9377
|
'is_a': 'core field',
|
|
@@ -9146,7 +9392,8 @@ class Biosample(Sample):
|
|
|
9146
9392
|
'value': 'measurement value'},
|
|
9147
9393
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9148
9394
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9149
|
-
'value': 'cubic meter per day'}
|
|
9395
|
+
'value': 'cubic meter per day'},
|
|
9396
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm3/d'}},
|
|
9150
9397
|
'domain_of': ['Biosample'],
|
|
9151
9398
|
'examples': [{'value': ''}],
|
|
9152
9399
|
'is_a': 'core field',
|
|
@@ -9224,7 +9471,8 @@ class Biosample(Sample):
|
|
|
9224
9471
|
'value': 'measurement value'},
|
|
9225
9472
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9226
9473
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9227
|
-
'value': 'millivolt'}
|
|
9474
|
+
'value': 'millivolt'},
|
|
9475
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mV'}},
|
|
9228
9476
|
'domain_of': ['Biosample'],
|
|
9229
9477
|
'examples': [{'value': '300 millivolt'}],
|
|
9230
9478
|
'is_a': 'core field',
|
|
@@ -9235,7 +9483,8 @@ class Biosample(Sample):
|
|
|
9235
9483
|
'value': 'measurement value'},
|
|
9236
9484
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9237
9485
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9238
|
-
'value': 'percentage'}
|
|
9486
|
+
'value': 'percentage'},
|
|
9487
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
9239
9488
|
'domain_of': ['Biosample'],
|
|
9240
9489
|
'examples': [{'value': '80%'}],
|
|
9241
9490
|
'is_a': 'core field',
|
|
@@ -9246,7 +9495,9 @@ class Biosample(Sample):
|
|
|
9246
9495
|
'value': 'measurement value'},
|
|
9247
9496
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9248
9497
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9249
|
-
'value': 'gram of air, kilogram of air'}
|
|
9498
|
+
'value': 'gram of air, kilogram of air'},
|
|
9499
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
9500
|
+
'value': 'mixs_inconsistent'}},
|
|
9250
9501
|
'domain_of': ['Biosample'],
|
|
9251
9502
|
'examples': [{'value': '12 per kilogram of air'}],
|
|
9252
9503
|
'is_a': 'core field',
|
|
@@ -9287,7 +9538,8 @@ class Biosample(Sample):
|
|
|
9287
9538
|
'value': 'measurement value'},
|
|
9288
9539
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9289
9540
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9290
|
-
'value': 'liter per hour'}
|
|
9541
|
+
'value': 'liter per hour'},
|
|
9542
|
+
'storage_units': {'tag': 'storage_units', 'value': 'L/h'}},
|
|
9291
9543
|
'domain_of': ['Biosample'],
|
|
9292
9544
|
'examples': [{'value': ''}],
|
|
9293
9545
|
'is_a': 'core field',
|
|
@@ -9404,7 +9656,8 @@ class Biosample(Sample):
|
|
|
9404
9656
|
'aliases': ['room occupancy'],
|
|
9405
9657
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
9406
9658
|
'value': 'measurement value'},
|
|
9407
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
9659
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9660
|
+
'storage_units': {'tag': 'storage_units', 'value': '1'}},
|
|
9408
9661
|
'domain_of': ['Biosample'],
|
|
9409
9662
|
'examples': [{'value': ''}],
|
|
9410
9663
|
'is_a': 'core field',
|
|
@@ -9510,7 +9763,8 @@ class Biosample(Sample):
|
|
|
9510
9763
|
'aliases': ['rooting medium pH'],
|
|
9511
9764
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
9512
9765
|
'value': 'measurement value'},
|
|
9513
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
9766
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9767
|
+
'storage_units': {'tag': 'storage_units', 'value': '[pH]'}},
|
|
9514
9768
|
'domain_of': ['Biosample'],
|
|
9515
9769
|
'examples': [{'value': '7.5'}],
|
|
9516
9770
|
'is_a': 'core field',
|
|
@@ -9557,7 +9811,8 @@ class Biosample(Sample):
|
|
|
9557
9811
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9558
9812
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9559
9813
|
'value': 'practical salinity unit, '
|
|
9560
|
-
'percentage'}
|
|
9814
|
+
'percentage'},
|
|
9815
|
+
'storage_units': {'tag': 'storage_units', 'value': '%|mg/L'}},
|
|
9561
9816
|
'domain_of': ['Biosample'],
|
|
9562
9817
|
'examples': [{'value': '25 practical salinity unit'}],
|
|
9563
9818
|
'is_a': 'core field',
|
|
@@ -9668,7 +9923,8 @@ class Biosample(Sample):
|
|
|
9668
9923
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
9669
9924
|
'value': 'measurement value;enumeration'},
|
|
9670
9925
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9671
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'}
|
|
9926
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
|
|
9927
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
9672
9928
|
'domain_of': ['Biosample'],
|
|
9673
9929
|
'examples': [{'value': '1534 meter;MSL'}],
|
|
9674
9930
|
'is_a': 'core field',
|
|
@@ -9707,7 +9963,9 @@ class Biosample(Sample):
|
|
|
9707
9963
|
'value': 'measurement value'},
|
|
9708
9964
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9709
9965
|
'value': 'millliter, gram, milligram, '
|
|
9710
|
-
'liter'}
|
|
9966
|
+
'liter'},
|
|
9967
|
+
'storage_units': {'tag': 'storage_units',
|
|
9968
|
+
'value': 'L|g|mL|mg'}},
|
|
9711
9969
|
'domain_of': ['Biosample'],
|
|
9712
9970
|
'examples': [{'value': '5 liter'}],
|
|
9713
9971
|
'is_a': 'nucleic acid sequence source field',
|
|
@@ -9748,7 +10006,8 @@ class Biosample(Sample):
|
|
|
9748
10006
|
'value': 'measurement value'},
|
|
9749
10007
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9750
10008
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9751
|
-
'value': 'degree Celsius'}
|
|
10009
|
+
'value': 'degree Celsius'},
|
|
10010
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
9752
10011
|
'domain_of': ['Biosample'],
|
|
9753
10012
|
'examples': [{'value': '-80 degree Celsius'}],
|
|
9754
10013
|
'is_a': 'core field',
|
|
@@ -9873,7 +10132,8 @@ class Biosample(Sample):
|
|
|
9873
10132
|
'value': 'measurement value'},
|
|
9874
10133
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9875
10134
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9876
|
-
'value': 'millimeter'}
|
|
10135
|
+
'value': 'millimeter'},
|
|
10136
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mm'}},
|
|
9877
10137
|
'comments': ['Seasons are defined as spring (March, April, May), summer '
|
|
9878
10138
|
'(June, July, August), autumn (September, October, November) and '
|
|
9879
10139
|
'winter (December, January, February).'],
|
|
@@ -9891,7 +10151,8 @@ class Biosample(Sample):
|
|
|
9891
10151
|
'value': 'measurement value'},
|
|
9892
10152
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
9893
10153
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
9894
|
-
'value': 'degree Celsius'}
|
|
10154
|
+
'value': 'degree Celsius'},
|
|
10155
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
9895
10156
|
'domain_of': ['Biosample'],
|
|
9896
10157
|
'examples': [{'value': '18 degree Celsius'}],
|
|
9897
10158
|
'is_a': 'core field',
|
|
@@ -10004,7 +10265,8 @@ class Biosample(Sample):
|
|
|
10004
10265
|
'value': 'measurement value'},
|
|
10005
10266
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10006
10267
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10007
|
-
'value': 'micromole per liter'}
|
|
10268
|
+
'value': 'micromole per liter'},
|
|
10269
|
+
'storage_units': {'tag': 'storage_units', 'value': 'umol/L'}},
|
|
10008
10270
|
'domain_of': ['Biosample'],
|
|
10009
10271
|
'examples': [{'value': '0.05 micromole per liter'}],
|
|
10010
10272
|
'is_a': 'core field',
|
|
@@ -10023,7 +10285,8 @@ class Biosample(Sample):
|
|
|
10023
10285
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
10024
10286
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10025
10287
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10026
|
-
'value': 'micrometer'}
|
|
10288
|
+
'value': 'micrometer'},
|
|
10289
|
+
'storage_units': {'tag': 'storage_units', 'value': 'um'}},
|
|
10027
10290
|
'domain_of': ['Biosample'],
|
|
10028
10291
|
'examples': [{'value': '0.2 micrometer'}],
|
|
10029
10292
|
'is_a': 'core field',
|
|
@@ -10033,7 +10296,8 @@ class Biosample(Sample):
|
|
|
10033
10296
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
10034
10297
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10035
10298
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10036
|
-
'value': 'micrometer'}
|
|
10299
|
+
'value': 'micrometer'},
|
|
10300
|
+
'storage_units': {'tag': 'storage_units', 'value': 'um'}},
|
|
10037
10301
|
'domain_of': ['Biosample'],
|
|
10038
10302
|
'examples': [{'value': '20 micrometer'}],
|
|
10039
10303
|
'is_a': 'core field',
|
|
@@ -10043,8 +10307,8 @@ class Biosample(Sample):
|
|
|
10043
10307
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10044
10308
|
'value': 'measurement value'},
|
|
10045
10309
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10046
|
-
'preferred_unit': {'tag': 'preferred_unit',
|
|
10047
|
-
|
|
10310
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'degree'},
|
|
10311
|
+
'storage_units': {'tag': 'storage_units', 'value': 'deg'}},
|
|
10048
10312
|
'comments': ['Aspect is the orientation of slope, measured clockwise in '
|
|
10049
10313
|
'degrees from 0 to 360, where 0 is north-facing, 90 is '
|
|
10050
10314
|
'east-facing, 180 is south-facing, and 270 is west-facing.'],
|
|
@@ -10058,7 +10322,8 @@ class Biosample(Sample):
|
|
|
10058
10322
|
'value': 'measurement value'},
|
|
10059
10323
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10060
10324
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10061
|
-
'value': 'percentage'}
|
|
10325
|
+
'value': 'percentage'},
|
|
10326
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
10062
10327
|
'domain_of': ['Biosample'],
|
|
10063
10328
|
'examples': [{'value': '10%'}, {'value': '10 %'}, {'value': '0.10'}],
|
|
10064
10329
|
'is_a': 'core field',
|
|
@@ -10070,7 +10335,8 @@ class Biosample(Sample):
|
|
|
10070
10335
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10071
10336
|
'value': 'measurement value'},
|
|
10072
10337
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10073
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'hours'}
|
|
10338
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'hours'},
|
|
10339
|
+
'storage_units': {'tag': 'storage_units', 'value': 'h'}},
|
|
10074
10340
|
'domain_of': ['Biosample'],
|
|
10075
10341
|
'examples': [{'value': ''}],
|
|
10076
10342
|
'is_a': 'core field',
|
|
@@ -10082,7 +10348,9 @@ class Biosample(Sample):
|
|
|
10082
10348
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10083
10349
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10084
10350
|
'value': 'milligram per liter, parts per '
|
|
10085
|
-
'million'}
|
|
10351
|
+
'million'},
|
|
10352
|
+
'storage_units': {'tag': 'storage_units',
|
|
10353
|
+
'value': '[ppm]|mg/L'}},
|
|
10086
10354
|
'domain_of': ['Biosample'],
|
|
10087
10355
|
'examples': [{'value': '10.5 milligram per liter'}],
|
|
10088
10356
|
'is_a': 'core field',
|
|
@@ -10100,7 +10368,9 @@ class Biosample(Sample):
|
|
|
10100
10368
|
'aliases': ['soil texture measurement'],
|
|
10101
10369
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10102
10370
|
'value': 'measurement value'},
|
|
10103
|
-
'occurrence': {'tag': 'occurrence', 'value': '1'}
|
|
10371
|
+
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10372
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
10373
|
+
'value': 'pending_analysis'}},
|
|
10104
10374
|
'domain_of': ['Biosample'],
|
|
10105
10375
|
'examples': [{'value': ''}],
|
|
10106
10376
|
'is_a': 'core field',
|
|
@@ -10143,7 +10413,9 @@ class Biosample(Sample):
|
|
|
10143
10413
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10144
10414
|
'value': 'kilowatts per square meter per '
|
|
10145
10415
|
'day, ergs per square centimeter '
|
|
10146
|
-
'per second'}
|
|
10416
|
+
'per second'},
|
|
10417
|
+
'storage_units': {'tag': 'storage_units',
|
|
10418
|
+
'value': 'kW/m2/d|erg/cm2/s'}},
|
|
10147
10419
|
'domain_of': ['Biosample'],
|
|
10148
10420
|
'examples': [{'value': '1.36 kilowatts per square meter per day'}],
|
|
10149
10421
|
'is_a': 'core field',
|
|
@@ -10185,7 +10457,9 @@ class Biosample(Sample):
|
|
|
10185
10457
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10186
10458
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10187
10459
|
'value': 'micromole per liter, milligram '
|
|
10188
|
-
'per liter, parts per million'}
|
|
10460
|
+
'per liter, parts per million'},
|
|
10461
|
+
'storage_units': {'tag': 'storage_units',
|
|
10462
|
+
'value': '[ppm]|mg/L|umol/L|ug/L'}},
|
|
10189
10463
|
'domain_of': ['Biosample'],
|
|
10190
10464
|
'examples': [{'value': '0.1 milligram per liter'}],
|
|
10191
10465
|
'is_a': 'core field',
|
|
@@ -10238,7 +10512,9 @@ class Biosample(Sample):
|
|
|
10238
10512
|
'value': 'measurement value'},
|
|
10239
10513
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10240
10514
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10241
|
-
'value': 'gram of air, kilogram of air'}
|
|
10515
|
+
'value': 'gram of air, kilogram of air'},
|
|
10516
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
10517
|
+
'value': 'mixs_inconsistent'}},
|
|
10242
10518
|
'domain_of': ['Biosample'],
|
|
10243
10519
|
'examples': [{'value': '15 per kilogram of air'}],
|
|
10244
10520
|
'is_a': 'core field',
|
|
@@ -10317,7 +10593,9 @@ class Biosample(Sample):
|
|
|
10317
10593
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10318
10594
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10319
10595
|
'value': 'micromole per liter, milligram '
|
|
10320
|
-
'per liter, parts per million'}
|
|
10596
|
+
'per liter, parts per million'},
|
|
10597
|
+
'storage_units': {'tag': 'storage_units',
|
|
10598
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
10321
10599
|
'domain_of': ['Biosample'],
|
|
10322
10600
|
'examples': [{'value': '5 micromole per liter'}],
|
|
10323
10601
|
'is_a': 'core field',
|
|
@@ -10328,7 +10606,8 @@ class Biosample(Sample):
|
|
|
10328
10606
|
'value': 'measurement value'},
|
|
10329
10607
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10330
10608
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10331
|
-
'value': 'milligram per liter'}
|
|
10609
|
+
'value': 'milligram per liter'},
|
|
10610
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
10332
10611
|
'domain_of': ['Biosample'],
|
|
10333
10612
|
'examples': [{'value': ''}],
|
|
10334
10613
|
'is_a': 'core field',
|
|
@@ -10340,7 +10619,9 @@ class Biosample(Sample):
|
|
|
10340
10619
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10341
10620
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10342
10621
|
'value': 'micromole per liter, milligram '
|
|
10343
|
-
'per liter, parts per million'}
|
|
10622
|
+
'per liter, parts per million'},
|
|
10623
|
+
'storage_units': {'tag': 'storage_units',
|
|
10624
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
10344
10625
|
'domain_of': ['Biosample'],
|
|
10345
10626
|
'examples': [{'value': '2 micromole per liter'}],
|
|
10346
10627
|
'is_a': 'core field',
|
|
@@ -10360,7 +10641,8 @@ class Biosample(Sample):
|
|
|
10360
10641
|
'value': 'measurement value'},
|
|
10361
10642
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10362
10643
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10363
|
-
'value': 'percentage'}
|
|
10644
|
+
'value': 'percentage'},
|
|
10645
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
10364
10646
|
'domain_of': ['Biosample'],
|
|
10365
10647
|
'examples': [{'value': '10%'}],
|
|
10366
10648
|
'is_a': 'core field',
|
|
@@ -10382,7 +10664,9 @@ class Biosample(Sample):
|
|
|
10382
10664
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10383
10665
|
'value': 'parts per million, gram per '
|
|
10384
10666
|
'cubic meter, gram per square '
|
|
10385
|
-
'meter'}
|
|
10667
|
+
'meter'},
|
|
10668
|
+
'storage_units': {'tag': 'storage_units',
|
|
10669
|
+
'value': '[ppm]|g/m2|g/m3'}},
|
|
10386
10670
|
'domain_of': ['Biosample'],
|
|
10387
10671
|
'examples': [{'value': '0.01 gram per square meter'}],
|
|
10388
10672
|
'is_a': 'core field',
|
|
@@ -10402,7 +10686,8 @@ class Biosample(Sample):
|
|
|
10402
10686
|
'value': 'measurement value'},
|
|
10403
10687
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10404
10688
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10405
|
-
'value': 'degree Celsius'}
|
|
10689
|
+
'value': 'degree Celsius'},
|
|
10690
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
10406
10691
|
'domain_of': ['Biosample'],
|
|
10407
10692
|
'examples': [{'value': '15 degree Celsius'}],
|
|
10408
10693
|
'is_a': 'core field',
|
|
@@ -10413,7 +10698,8 @@ class Biosample(Sample):
|
|
|
10413
10698
|
'value': 'measurement value'},
|
|
10414
10699
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10415
10700
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10416
|
-
'value': 'milligram per liter'}
|
|
10701
|
+
'value': 'milligram per liter'},
|
|
10702
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
10417
10703
|
'domain_of': ['Biosample'],
|
|
10418
10704
|
'examples': [{'value': '0.5 milligram per liter'}],
|
|
10419
10705
|
'is_a': 'core field',
|
|
@@ -10439,7 +10725,8 @@ class Biosample(Sample):
|
|
|
10439
10725
|
'value': 'measurement value'},
|
|
10440
10726
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10441
10727
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10442
|
-
'value': 'milligram per liter'}
|
|
10728
|
+
'value': 'milligram per liter'},
|
|
10729
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
10443
10730
|
'domain_of': ['Biosample'],
|
|
10444
10731
|
'examples': [{'value': ''}],
|
|
10445
10732
|
'is_a': 'core field',
|
|
@@ -10449,7 +10736,8 @@ class Biosample(Sample):
|
|
|
10449
10736
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10450
10737
|
'value': 'measurement value'},
|
|
10451
10738
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10452
|
-
'value': 'degree Celsius'}
|
|
10739
|
+
'value': 'degree Celsius'},
|
|
10740
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
10453
10741
|
'domain_of': ['Biosample'],
|
|
10454
10742
|
'examples': [{'value': '25 degree Celsius'}],
|
|
10455
10743
|
'is_a': 'environment field',
|
|
@@ -10460,7 +10748,8 @@ class Biosample(Sample):
|
|
|
10460
10748
|
'value': 'measurement value'},
|
|
10461
10749
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10462
10750
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10463
|
-
'value': 'degree Celsius'}
|
|
10751
|
+
'value': 'degree Celsius'},
|
|
10752
|
+
'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
10464
10753
|
'domain_of': ['Biosample'],
|
|
10465
10754
|
'examples': [{'value': '5 degree Celsius'}],
|
|
10466
10755
|
'is_a': 'core field',
|
|
@@ -10510,7 +10799,9 @@ class Biosample(Sample):
|
|
|
10510
10799
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10511
10800
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10512
10801
|
'value': 'milligram per liter, parts per '
|
|
10513
|
-
'million'}
|
|
10802
|
+
'million'},
|
|
10803
|
+
'storage_units': {'tag': 'storage_units',
|
|
10804
|
+
'value': '[ppm]|mg/L'}},
|
|
10514
10805
|
'domain_of': ['Biosample'],
|
|
10515
10806
|
'examples': [{'value': ''}],
|
|
10516
10807
|
'is_a': 'core field',
|
|
@@ -10521,7 +10812,8 @@ class Biosample(Sample):
|
|
|
10521
10812
|
'value': 'measurement value'},
|
|
10522
10813
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10523
10814
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10524
|
-
'value': 'microgram per liter'}
|
|
10815
|
+
'value': 'microgram per liter'},
|
|
10816
|
+
'storage_units': {'tag': 'storage_units', 'value': 'ug/L|%'}},
|
|
10525
10817
|
'domain_of': ['Biosample'],
|
|
10526
10818
|
'examples': [{'value': '1 ug/L'}],
|
|
10527
10819
|
'is_a': 'core field',
|
|
@@ -10535,7 +10827,8 @@ class Biosample(Sample):
|
|
|
10535
10827
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10536
10828
|
'value': 'measurement value'},
|
|
10537
10829
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10538
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'}
|
|
10830
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
|
|
10831
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
10539
10832
|
'domain_of': ['Biosample'],
|
|
10540
10833
|
'examples': [{'value': '500 meter'}],
|
|
10541
10834
|
'is_a': 'core field',
|
|
@@ -10546,7 +10839,9 @@ class Biosample(Sample):
|
|
|
10546
10839
|
'value': 'measurement value'},
|
|
10547
10840
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10548
10841
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10549
|
-
'value': 'microgram per liter'}
|
|
10842
|
+
'value': 'microgram per liter'},
|
|
10843
|
+
'storage_units': {'tag': 'storage_units',
|
|
10844
|
+
'value': 'ug/L|umol/L'}},
|
|
10550
10845
|
'domain_of': ['Biosample'],
|
|
10551
10846
|
'examples': [{'value': '40 microgram per liter'}],
|
|
10552
10847
|
'is_a': 'core field',
|
|
@@ -10557,7 +10852,8 @@ class Biosample(Sample):
|
|
|
10557
10852
|
'value': 'measurement value'},
|
|
10558
10853
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10559
10854
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10560
|
-
'value': 'microgram per liter'}
|
|
10855
|
+
'value': 'microgram per liter'},
|
|
10856
|
+
'storage_units': {'tag': 'storage_units', 'value': 'ug/L'}},
|
|
10561
10857
|
'domain_of': ['Biosample'],
|
|
10562
10858
|
'examples': [{'value': '40 microgram per liter'}],
|
|
10563
10859
|
'is_a': 'core field',
|
|
@@ -10569,7 +10865,9 @@ class Biosample(Sample):
|
|
|
10569
10865
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10570
10866
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10571
10867
|
'value': 'milligram per liter, milligram '
|
|
10572
|
-
'per kilogram'}
|
|
10868
|
+
'per kilogram'},
|
|
10869
|
+
'storage_units': {'tag': 'storage_units',
|
|
10870
|
+
'value': 'mg/L|mg/kg'}},
|
|
10573
10871
|
'domain_of': ['Biosample'],
|
|
10574
10872
|
'examples': [{'value': ''}],
|
|
10575
10873
|
'is_a': 'core field',
|
|
@@ -10581,7 +10879,9 @@ class Biosample(Sample):
|
|
|
10581
10879
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10582
10880
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10583
10881
|
'value': 'microgram per liter, micromole '
|
|
10584
|
-
'per liter, milligram per liter'}
|
|
10882
|
+
'per liter, milligram per liter'},
|
|
10883
|
+
'storage_units': {'tag': 'storage_units',
|
|
10884
|
+
'value': 'mg/L|ug/L|umol/L|%'}},
|
|
10585
10885
|
'domain_of': ['Biosample'],
|
|
10586
10886
|
'examples': [{'value': '50 micromole per liter'}],
|
|
10587
10887
|
'is_a': 'core field',
|
|
@@ -10604,7 +10904,9 @@ class Biosample(Sample):
|
|
|
10604
10904
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10605
10905
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10606
10906
|
'value': 'microgram per liter, micromole '
|
|
10607
|
-
'per liter, milligram per liter'}
|
|
10907
|
+
'per liter, milligram per liter'},
|
|
10908
|
+
'storage_units': {'tag': 'storage_units',
|
|
10909
|
+
'value': 'mg/L|ug/L|umol/L|%'}},
|
|
10608
10910
|
'domain_of': ['Biosample'],
|
|
10609
10911
|
'examples': [{'value': '5 mg N/ L'}],
|
|
10610
10912
|
'is_a': 'core field',
|
|
@@ -10626,7 +10928,8 @@ class Biosample(Sample):
|
|
|
10626
10928
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10627
10929
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10628
10930
|
'value': 'gram Carbon per kilogram sample '
|
|
10629
|
-
'material'}
|
|
10931
|
+
'material'},
|
|
10932
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
10630
10933
|
'domain_of': ['Biosample'],
|
|
10631
10934
|
'examples': [{'value': '5 mg N/ L'}],
|
|
10632
10935
|
'is_a': 'core field',
|
|
@@ -10639,7 +10942,9 @@ class Biosample(Sample):
|
|
|
10639
10942
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10640
10943
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10641
10944
|
'value': 'microgram per liter, micromole '
|
|
10642
|
-
'per liter'}
|
|
10945
|
+
'per liter'},
|
|
10946
|
+
'storage_units': {'tag': 'storage_units',
|
|
10947
|
+
'value': 'ug/L|umol/L'}},
|
|
10643
10948
|
'domain_of': ['Biosample'],
|
|
10644
10949
|
'examples': [{'value': '35 micromole per liter'}],
|
|
10645
10950
|
'is_a': 'core field',
|
|
@@ -10651,7 +10956,9 @@ class Biosample(Sample):
|
|
|
10651
10956
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10652
10957
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10653
10958
|
'value': 'micromole per liter, milligram '
|
|
10654
|
-
'per liter, parts per million'}
|
|
10959
|
+
'per liter, parts per million'},
|
|
10960
|
+
'storage_units': {'tag': 'storage_units',
|
|
10961
|
+
'value': '[ppm]|mg/L|umol/L'}},
|
|
10655
10962
|
'domain_of': ['Biosample'],
|
|
10656
10963
|
'examples': [{'value': '0.03 milligram per liter'}],
|
|
10657
10964
|
'is_a': 'core field',
|
|
@@ -10663,7 +10970,9 @@ class Biosample(Sample):
|
|
|
10663
10970
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10664
10971
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10665
10972
|
'value': 'microgram per liter, micromole '
|
|
10666
|
-
'per liter'}
|
|
10973
|
+
'per liter'},
|
|
10974
|
+
'storage_units': {'tag': 'storage_units',
|
|
10975
|
+
'value': 'ug/L|umol/L'}},
|
|
10667
10976
|
'domain_of': ['Biosample'],
|
|
10668
10977
|
'examples': [{'value': ''}],
|
|
10669
10978
|
'is_a': 'core field',
|
|
@@ -10675,7 +10984,9 @@ class Biosample(Sample):
|
|
|
10675
10984
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10676
10985
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10677
10986
|
'value': 'milligram per liter, parts per '
|
|
10678
|
-
'million'}
|
|
10987
|
+
'million'},
|
|
10988
|
+
'storage_units': {'tag': 'storage_units',
|
|
10989
|
+
'value': '[ppm]|mg/L'}},
|
|
10679
10990
|
'domain_of': ['Biosample'],
|
|
10680
10991
|
'examples': [{'value': ''}],
|
|
10681
10992
|
'is_a': 'core field',
|
|
@@ -10714,7 +11025,9 @@ class Biosample(Sample):
|
|
|
10714
11025
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10715
11026
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10716
11027
|
'value': 'formazin turbidity unit, '
|
|
10717
|
-
'formazin nephelometric units'}
|
|
11028
|
+
'formazin nephelometric units'},
|
|
11029
|
+
'storage_units': {'tag': 'storage_units',
|
|
11030
|
+
'value': '[NTU]|[FNU]'}},
|
|
10718
11031
|
'domain_of': ['Biosample'],
|
|
10719
11032
|
'examples': [{'value': '0.3 nephelometric turbidity units'}],
|
|
10720
11033
|
'is_a': 'core field',
|
|
@@ -10724,7 +11037,8 @@ class Biosample(Sample):
|
|
|
10724
11037
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10725
11038
|
'value': 'measurement value'},
|
|
10726
11039
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10727
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'}
|
|
11040
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
|
|
11041
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
10728
11042
|
'domain_of': ['Biosample'],
|
|
10729
11043
|
'examples': [{'value': ''}],
|
|
10730
11044
|
'is_a': 'core field',
|
|
@@ -10734,7 +11048,9 @@ class Biosample(Sample):
|
|
|
10734
11048
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
10735
11049
|
'value': 'measurement value'},
|
|
10736
11050
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10737
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'}
|
|
11051
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'meter'},
|
|
11052
|
+
'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
11053
|
+
'value': 'complex_unit'}},
|
|
10738
11054
|
'domain_of': ['Biosample'],
|
|
10739
11055
|
'examples': [{'value': ''}],
|
|
10740
11056
|
'is_a': 'core field',
|
|
@@ -10755,7 +11071,9 @@ class Biosample(Sample):
|
|
|
10755
11071
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10756
11072
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10757
11073
|
'value': 'cubic meter per minute, liters '
|
|
10758
|
-
'per second'}
|
|
11074
|
+
'per second'},
|
|
11075
|
+
'storage_units': {'tag': 'storage_units',
|
|
11076
|
+
'value': 'L/s|m3/min'}},
|
|
10759
11077
|
'domain_of': ['Biosample'],
|
|
10760
11078
|
'examples': [{'value': '750 cubic meter per minute'}],
|
|
10761
11079
|
'is_a': 'core field',
|
|
@@ -10777,7 +11095,9 @@ class Biosample(Sample):
|
|
|
10777
11095
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10778
11096
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10779
11097
|
'value': 'milligram per liter, parts per '
|
|
10780
|
-
'million'}
|
|
11098
|
+
'million'},
|
|
11099
|
+
'storage_units': {'tag': 'storage_units',
|
|
11100
|
+
'value': '[ppm]|mg/L'}},
|
|
10781
11101
|
'domain_of': ['Biosample'],
|
|
10782
11102
|
'examples': [{'value': ''}],
|
|
10783
11103
|
'is_a': 'core field',
|
|
@@ -10788,7 +11108,8 @@ class Biosample(Sample):
|
|
|
10788
11108
|
'value': 'measurement value'},
|
|
10789
11109
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10790
11110
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10791
|
-
'value': 'milligram per liter'}
|
|
11111
|
+
'value': 'milligram per liter'},
|
|
11112
|
+
'storage_units': {'tag': 'storage_units', 'value': 'mg/L'}},
|
|
10792
11113
|
'domain_of': ['Biosample'],
|
|
10793
11114
|
'examples': [{'value': ''}],
|
|
10794
11115
|
'is_a': 'core field',
|
|
@@ -10836,7 +11157,8 @@ class Biosample(Sample):
|
|
|
10836
11157
|
'value': 'measurement value'},
|
|
10837
11158
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10838
11159
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10839
|
-
'value': 'square meter'}
|
|
11160
|
+
'value': 'square meter'},
|
|
11161
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
10840
11162
|
'domain_of': ['Biosample'],
|
|
10841
11163
|
'examples': [{'value': ''}],
|
|
10842
11164
|
'is_a': 'core field',
|
|
@@ -10864,7 +11186,8 @@ class Biosample(Sample):
|
|
|
10864
11186
|
'annotations': {'expected_value': {'tag': 'expected_value', 'value': 'value'},
|
|
10865
11187
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10866
11188
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10867
|
-
'value': 'centimeter'}
|
|
11189
|
+
'value': 'centimeter'},
|
|
11190
|
+
'storage_units': {'tag': 'storage_units', 'value': 'cm'}},
|
|
10868
11191
|
'domain_of': ['Biosample'],
|
|
10869
11192
|
'examples': [{'value': ''}],
|
|
10870
11193
|
'is_a': 'core field',
|
|
@@ -10902,7 +11225,8 @@ class Biosample(Sample):
|
|
|
10902
11225
|
'value': 'measurement value'},
|
|
10903
11226
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10904
11227
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10905
|
-
'value': 'joule per degree Celsius'}
|
|
11228
|
+
'value': 'joule per degree Celsius'},
|
|
11229
|
+
'storage_units': {'tag': 'storage_units', 'value': 'J/K'}},
|
|
10906
11230
|
'domain_of': ['Biosample'],
|
|
10907
11231
|
'examples': [{'value': ''}],
|
|
10908
11232
|
'is_a': 'core field',
|
|
@@ -10970,7 +11294,9 @@ class Biosample(Sample):
|
|
|
10970
11294
|
'value': 'measurement value'},
|
|
10971
11295
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10972
11296
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10973
|
-
'value': 'cubic meter per second, knots'}
|
|
11297
|
+
'value': 'cubic meter per second, knots'},
|
|
11298
|
+
'storage_units': {'tag': 'storage_units',
|
|
11299
|
+
'value': '[kn_i]|m3/s'}},
|
|
10974
11300
|
'domain_of': ['Biosample'],
|
|
10975
11301
|
'examples': [{'value': '10 cubic meter per second'}],
|
|
10976
11302
|
'is_a': 'core field',
|
|
@@ -10981,7 +11307,8 @@ class Biosample(Sample):
|
|
|
10981
11307
|
'value': 'measurement value'},
|
|
10982
11308
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10983
11309
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10984
|
-
'value': 'percent'}
|
|
11310
|
+
'value': 'percent'},
|
|
11311
|
+
'storage_units': {'tag': 'storage_units', 'value': '%'}},
|
|
10985
11312
|
'domain_of': ['Biosample'],
|
|
10986
11313
|
'examples': [{'value': ''}],
|
|
10987
11314
|
'is_a': 'core field',
|
|
@@ -10992,7 +11319,8 @@ class Biosample(Sample):
|
|
|
10992
11319
|
'value': 'measurement value'},
|
|
10993
11320
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
10994
11321
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
10995
|
-
'value': 'square meter'}
|
|
11322
|
+
'value': 'square meter'},
|
|
11323
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm2'}},
|
|
10996
11324
|
'domain_of': ['Biosample'],
|
|
10997
11325
|
'examples': [{'value': ''}],
|
|
10998
11326
|
'is_a': 'core field',
|
|
@@ -11012,7 +11340,8 @@ class Biosample(Sample):
|
|
|
11012
11340
|
'value': 'measurement value'},
|
|
11013
11341
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11014
11342
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11015
|
-
'value': 'cubic meter per day'}
|
|
11343
|
+
'value': 'cubic meter per day'},
|
|
11344
|
+
'storage_units': {'tag': 'storage_units', 'value': 'm3/d'}},
|
|
11016
11345
|
'domain_of': ['Biosample'],
|
|
11017
11346
|
'examples': [{'value': ''}],
|
|
11018
11347
|
'is_a': 'core field',
|
|
@@ -11080,7 +11409,9 @@ class Biosample(Sample):
|
|
|
11080
11409
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11081
11410
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11082
11411
|
'value': 'meter per second, kilometer per '
|
|
11083
|
-
'hour'}
|
|
11412
|
+
'hour'},
|
|
11413
|
+
'storage_units': {'tag': 'storage_units',
|
|
11414
|
+
'value': 'km/h|m/s'}},
|
|
11084
11415
|
'domain_of': ['Biosample'],
|
|
11085
11416
|
'examples': [{'value': '21 kilometer per hour'}],
|
|
11086
11417
|
'is_a': 'core field',
|
|
@@ -11196,7 +11527,9 @@ class Biosample(Sample):
|
|
|
11196
11527
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11197
11528
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11198
11529
|
'value': 'milligram per liter, parts per '
|
|
11199
|
-
'million'}
|
|
11530
|
+
'million'},
|
|
11531
|
+
'storage_units': {'tag': 'storage_units',
|
|
11532
|
+
'value': '[ppm]|mg/L'}},
|
|
11200
11533
|
'domain_of': ['Biosample'],
|
|
11201
11534
|
'examples': [{'value': ''}],
|
|
11202
11535
|
'is_a': 'core field',
|
|
@@ -11261,7 +11594,9 @@ class Biosample(Sample):
|
|
|
11261
11594
|
'see_also': ['https://github.com/microbiomedata/nmdc-metadata/pull/297']} })
|
|
11262
11595
|
sample_collection_site: Optional[str] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'sample_collection_site', 'domain_of': ['Biosample']} })
|
|
11263
11596
|
soluble_iron_micromol: Optional[str] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'soluble_iron_micromol', 'domain_of': ['Biosample']} })
|
|
11264
|
-
subsurface_depth: Optional[QuantityValue] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'subsurface_depth',
|
|
11597
|
+
subsurface_depth: Optional[QuantityValue] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'subsurface_depth',
|
|
11598
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'm'}},
|
|
11599
|
+
'domain_of': ['Biosample']} })
|
|
11265
11600
|
dna_collect_site: Optional[str] = Field(default=None, title="DNA collection site", description="""Provide information on the site your DNA sample was collected from""", json_schema_extra = { "linkml_meta": {'alias': 'dna_collect_site',
|
|
11266
11601
|
'domain_of': ['Biosample'],
|
|
11267
11602
|
'examples': [{'value': 'untreated pond water'}],
|
|
@@ -11535,6 +11870,8 @@ class Biosample(Sample):
|
|
|
11535
11870
|
'slot_group': 'Sample ID',
|
|
11536
11871
|
'string_serialization': '{text}:{text}'} })
|
|
11537
11872
|
bulk_elect_conductivity: Optional[QuantityValue] = Field(default=None, title="bulk electrical conductivity", description="""Electrical conductivity is a measure of the ability to carry electric current, which is mostly dictated by the chemistry of and amount of water.""", json_schema_extra = { "linkml_meta": {'alias': 'bulk_elect_conductivity',
|
|
11873
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
11874
|
+
'value': 'pending_analysis'}},
|
|
11538
11875
|
'comments': ['Provide the value output of the field instrument.'],
|
|
11539
11876
|
'domain_of': ['Biosample'],
|
|
11540
11877
|
'examples': [{'description': 'The conductivity measurement was 0.017 '
|
|
@@ -11552,7 +11889,9 @@ class Biosample(Sample):
|
|
|
11552
11889
|
'value': 'measurement value'},
|
|
11553
11890
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11554
11891
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11555
|
-
'value': 'mg/kg (ppm)'}
|
|
11892
|
+
'value': 'mg/kg (ppm)'},
|
|
11893
|
+
'storage_units': {'tag': 'storage_units',
|
|
11894
|
+
'value': '[ppm]|mg/kg|mg/L'}},
|
|
11556
11895
|
'domain_of': ['Biosample'],
|
|
11557
11896
|
'examples': [{'value': '2.5 mg/kg'}],
|
|
11558
11897
|
'see_also': ['https://www.ornl.gov/content/bio-scales-0']} })
|
|
@@ -11561,7 +11900,9 @@ class Biosample(Sample):
|
|
|
11561
11900
|
'value': 'measurement value'},
|
|
11562
11901
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11563
11902
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11564
|
-
'value': 'mg/kg (ppm)'}
|
|
11903
|
+
'value': 'mg/kg (ppm)'},
|
|
11904
|
+
'storage_units': {'tag': 'storage_units',
|
|
11905
|
+
'value': '[ppm]|mg/kg|mg/L'}},
|
|
11565
11906
|
'domain_of': ['Biosample'],
|
|
11566
11907
|
'examples': [{'value': '24.7 mg/kg'}],
|
|
11567
11908
|
'see_also': ['https://www.ornl.gov/content/bio-scales-0']} })
|
|
@@ -11570,7 +11911,9 @@ class Biosample(Sample):
|
|
|
11570
11911
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
11571
11912
|
'value': 'measurement value'},
|
|
11572
11913
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11573
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'}
|
|
11914
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'},
|
|
11915
|
+
'storage_units': {'tag': 'storage_units',
|
|
11916
|
+
'value': '[ppm]|mg/kg|mg/L'}},
|
|
11574
11917
|
'domain_of': ['Biosample'],
|
|
11575
11918
|
'examples': [{'value': '2.3 mg/kg'}],
|
|
11576
11919
|
'see_also': ['https://www.ornl.gov/content/bio-scales-0']} })
|
|
@@ -11579,7 +11922,9 @@ class Biosample(Sample):
|
|
|
11579
11922
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
11580
11923
|
'value': 'measurement value'},
|
|
11581
11924
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11582
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'}
|
|
11925
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'},
|
|
11926
|
+
'storage_units': {'tag': 'storage_units',
|
|
11927
|
+
'value': '[ppm]|mg/kg|mg/L'}},
|
|
11583
11928
|
'comments': ['often below some specified limit of detection'],
|
|
11584
11929
|
'domain_of': ['Biosample'],
|
|
11585
11930
|
'examples': [{'value': '0.29 mg/kg'}],
|
|
@@ -11589,7 +11934,9 @@ class Biosample(Sample):
|
|
|
11589
11934
|
'annotations': {'expected_value': {'tag': 'expected_value',
|
|
11590
11935
|
'value': 'measurement value'},
|
|
11591
11936
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11592
|
-
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'}
|
|
11937
|
+
'preferred_unit': {'tag': 'preferred_unit', 'value': 'mg/kg'},
|
|
11938
|
+
'storage_units': {'tag': 'storage_units',
|
|
11939
|
+
'value': '[ppm]|mg/kg|mg/L'}},
|
|
11593
11940
|
'domain_of': ['Biosample'],
|
|
11594
11941
|
'examples': [{'value': '1.2 mg/kg'}],
|
|
11595
11942
|
'see_also': ['https://www.ornl.gov/content/bio-scales-0']} })
|
|
@@ -11599,7 +11946,8 @@ class Biosample(Sample):
|
|
|
11599
11946
|
'value': 'measurement value'},
|
|
11600
11947
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11601
11948
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11602
|
-
'value': 'ppm CaCO3/pH'}
|
|
11949
|
+
'value': 'ppm CaCO3/pH'},
|
|
11950
|
+
'storage_units': {'tag': 'storage_units', 'value': '[ppm]'}},
|
|
11603
11951
|
'comments': ['This is the mass of lime, in mg, needed to raise the pH of one '
|
|
11604
11952
|
'kg of soil by one pH unit'],
|
|
11605
11953
|
'domain_of': ['Biosample'],
|
|
@@ -11612,7 +11960,8 @@ class Biosample(Sample):
|
|
|
11612
11960
|
'value': 'measurement value'},
|
|
11613
11961
|
'occurrence': {'tag': 'occurrence', 'value': '1'},
|
|
11614
11962
|
'preferred_unit': {'tag': 'preferred_unit',
|
|
11615
|
-
'value': 'ppm CaCO3/pH'}
|
|
11963
|
+
'value': 'ppm CaCO3/pH'},
|
|
11964
|
+
'storage_units': {'tag': 'storage_units', 'value': '[ppm]'}},
|
|
11616
11965
|
'comments': ['This is the mass of lime, in mg, needed to raise the pH of one '
|
|
11617
11966
|
'kg of soil by one pH unit'],
|
|
11618
11967
|
'domain_of': ['Biosample'],
|
|
@@ -11852,7 +12201,10 @@ class ProcessedSample(Sample):
|
|
|
11852
12201
|
'syntax': '{id_nmdc_prefix}:procsm-{id_shoulder}-{id_blade}$'}}},
|
|
11853
12202
|
'title': 'Processed Sample'})
|
|
11854
12203
|
|
|
11855
|
-
biomaterial_purity: Optional[QuantityValue] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'biomaterial_purity',
|
|
12204
|
+
biomaterial_purity: Optional[QuantityValue] = Field(default=None, json_schema_extra = { "linkml_meta": {'alias': 'biomaterial_purity',
|
|
12205
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
12206
|
+
'value': 'pending_analysis'}},
|
|
12207
|
+
'domain_of': ['ProcessedSample']} })
|
|
11856
12208
|
dna_absorb1: Optional[float] = Field(default=None, title="DNA absorbance 260/280", description="""260/280 measurement of DNA sample purity""", json_schema_extra = { "linkml_meta": {'alias': 'dna_absorb1',
|
|
11857
12209
|
'comments': ['Recommended value is between 1 and 3.'],
|
|
11858
12210
|
'domain_of': ['ProcessedSample'],
|
|
@@ -12646,6 +12998,7 @@ class StorageProcess(PlannedProcess):
|
|
|
12646
12998
|
{'value': 'falcon tube'},
|
|
12647
12999
|
{'value': 'whirlpak'}]} })
|
|
12648
13000
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
13001
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
12649
13002
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
12650
13003
|
'domain_of': ['ChromatographyConfiguration',
|
|
12651
13004
|
'Extraction',
|
|
@@ -13178,10 +13531,12 @@ class Extraction(MaterialProcessing):
|
|
|
13178
13531
|
'rank': 1000} })
|
|
13179
13532
|
input_mass: Optional[QuantityValue] = Field(default=None, title="sample mass used", description="""Total mass of sample used in activity.""", json_schema_extra = { "linkml_meta": {'alias': 'input_mass',
|
|
13180
13533
|
'aliases': ['sample mass', 'sample weight'],
|
|
13534
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'g'}},
|
|
13181
13535
|
'domain_of': ['Extraction'],
|
|
13182
13536
|
'exact_mappings': ['MS:1000004'],
|
|
13183
13537
|
'narrow_mappings': ['MIXS:0000111']} })
|
|
13184
13538
|
volume: Optional[QuantityValue] = Field(default=None, description="""The volume of the solvent/solute being used, not the input.""", json_schema_extra = { "linkml_meta": {'alias': 'volume',
|
|
13539
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'mL|uL'}},
|
|
13185
13540
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
13186
13541
|
'domain_of': ['Extraction',
|
|
13187
13542
|
'SubSamplingProcess',
|
|
@@ -13189,6 +13544,7 @@ class Extraction(MaterialProcessing):
|
|
|
13189
13544
|
'MobilePhaseSegment',
|
|
13190
13545
|
'PortionOfSubstance']} })
|
|
13191
13546
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
13547
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
13192
13548
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
13193
13549
|
'domain_of': ['ChromatographyConfiguration',
|
|
13194
13550
|
'Extraction',
|
|
@@ -13641,6 +13997,8 @@ class SubSamplingProcess(MaterialProcessing):
|
|
|
13641
13997
|
'name': 'volume'}}})
|
|
13642
13998
|
|
|
13643
13999
|
container_size: Optional[QuantityValue] = Field(default=None, description="""The volume of the container an analyte is stored in or an activity takes place in""", json_schema_extra = { "linkml_meta": {'alias': 'container_size',
|
|
14000
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
14001
|
+
'value': 'pending_analysis'}},
|
|
13644
14002
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
13645
14003
|
'domain_of': ['SubSamplingProcess', 'FiltrationProcess']} })
|
|
13646
14004
|
contained_in: Optional[ContainerCategoryEnum] = Field(default=None, description="""A type of container.""", json_schema_extra = { "linkml_meta": {'alias': 'contained_in',
|
|
@@ -13649,6 +14007,7 @@ class SubSamplingProcess(MaterialProcessing):
|
|
|
13649
14007
|
{'value': 'falcon tube'},
|
|
13650
14008
|
{'value': 'whirlpak'}]} })
|
|
13651
14009
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
14010
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
13652
14011
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
13653
14012
|
'domain_of': ['ChromatographyConfiguration',
|
|
13654
14013
|
'Extraction',
|
|
@@ -13659,6 +14018,7 @@ class SubSamplingProcess(MaterialProcessing):
|
|
|
13659
14018
|
'ChemicalConversionProcess'],
|
|
13660
14019
|
'notes': ['Not to be confused with the MIXS:0000113']} })
|
|
13661
14020
|
volume: Optional[QuantityValue] = Field(default=None, description="""The output volume of the SubSampling Process.""", json_schema_extra = { "linkml_meta": {'alias': 'volume',
|
|
14021
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'mL|uL'}},
|
|
13662
14022
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
13663
14023
|
'domain_of': ['Extraction',
|
|
13664
14024
|
'SubSamplingProcess',
|
|
@@ -13666,6 +14026,7 @@ class SubSamplingProcess(MaterialProcessing):
|
|
|
13666
14026
|
'MobilePhaseSegment',
|
|
13667
14027
|
'PortionOfSubstance']} })
|
|
13668
14028
|
mass: Optional[QuantityValue] = Field(default=None, title="mass", description="""The output mass of the SubSampling Process.""", json_schema_extra = { "linkml_meta": {'alias': 'mass',
|
|
14029
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'g'}},
|
|
13669
14030
|
'domain_of': ['SubSamplingProcess', 'PortionOfSubstance'],
|
|
13670
14031
|
'exact_mappings': ['PATO:0000125']} })
|
|
13671
14032
|
sampled_portion: Optional[list[SamplePortionEnum]] = Field(default=None, description="""The portion of the sample that is taken for downstream activity.""", json_schema_extra = { "linkml_meta": {'alias': 'sampled_portion',
|
|
@@ -13856,6 +14217,7 @@ class MixingProcess(MaterialProcessing):
|
|
|
13856
14217
|
'structured_pattern': {'syntax': '{id_nmdc_prefix}:mixpro-{id_shoulder}-{id_blade}$'}}}})
|
|
13857
14218
|
|
|
13858
14219
|
duration: Optional[QuantityValue] = Field(default=None, description="""The elapsed time of an activity.""", json_schema_extra = { "linkml_meta": {'alias': 'duration',
|
|
14220
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'h|min'}},
|
|
13859
14221
|
'domain_of': ['MixingProcess',
|
|
13860
14222
|
'DissolvingProcess',
|
|
13861
14223
|
'ChemicalConversionProcess',
|
|
@@ -14045,6 +14407,8 @@ class FiltrationProcess(MaterialProcessing):
|
|
|
14045
14407
|
'domain_of': ['FiltrationProcess'],
|
|
14046
14408
|
'list_elements_ordered': True} })
|
|
14047
14409
|
container_size: Optional[QuantityValue] = Field(default=None, description="""The volume of the container an analyte is stored in or an activity takes place in""", json_schema_extra = { "linkml_meta": {'alias': 'container_size',
|
|
14410
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
14411
|
+
'value': 'pending_analysis'}},
|
|
14048
14412
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
14049
14413
|
'domain_of': ['SubSamplingProcess', 'FiltrationProcess']} })
|
|
14050
14414
|
filter_material: Optional[str] = Field(default=None, description="""A porous material on which solid particles present in air or other fluid which flows through it are largely caught and retained.""", json_schema_extra = { "linkml_meta": {'alias': 'filter_material',
|
|
@@ -14059,11 +14423,15 @@ class FiltrationProcess(MaterialProcessing):
|
|
|
14059
14423
|
'commonly and several pore sizes are available for air sampling '
|
|
14060
14424
|
'(0.45−0.8 μm are commonly employed).'],
|
|
14061
14425
|
'domain_of': ['FiltrationProcess']} })
|
|
14062
|
-
filter_pore_size: Optional[QuantityValue] = Field(default=None, description="""A quantitative or qualitative measurement of the physical dimensions of the pores in a material.""", json_schema_extra = { "linkml_meta": {'alias': 'filter_pore_size',
|
|
14426
|
+
filter_pore_size: Optional[QuantityValue] = Field(default=None, description="""A quantitative or qualitative measurement of the physical dimensions of the pores in a material.""", json_schema_extra = { "linkml_meta": {'alias': 'filter_pore_size',
|
|
14427
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
14428
|
+
'value': 'pending_analysis'}},
|
|
14429
|
+
'domain_of': ['FiltrationProcess']} })
|
|
14063
14430
|
filtration_category: Optional[str] = Field(default=None, description="""The type of conditioning applied to a filter, device, etc.""", json_schema_extra = { "linkml_meta": {'alias': 'filtration_category', 'domain_of': ['FiltrationProcess']} })
|
|
14064
14431
|
is_pressurized: Optional[bool] = Field(default=None, description="""Whether or not pressure was applied to a thing or process.""", json_schema_extra = { "linkml_meta": {'alias': 'is_pressurized', 'domain_of': ['FiltrationProcess']} })
|
|
14065
14432
|
separation_method: Optional[SeparationMethodEnum] = Field(default=None, description="""The method that was used to separate a substance from a solution or mixture.""", json_schema_extra = { "linkml_meta": {'alias': 'separation_method', 'domain_of': ['FiltrationProcess']} })
|
|
14066
14433
|
volume: Optional[QuantityValue] = Field(default=None, description="""The volume of sample filtered.""", json_schema_extra = { "linkml_meta": {'alias': 'volume',
|
|
14434
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'mL|uL'}},
|
|
14067
14435
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
14068
14436
|
'domain_of': ['Extraction',
|
|
14069
14437
|
'SubSamplingProcess',
|
|
@@ -14255,6 +14623,7 @@ class ChromatographicSeparationProcess(MaterialProcessing):
|
|
|
14255
14623
|
'domain_of': ['ChromatographyConfiguration',
|
|
14256
14624
|
'ChromatographicSeparationProcess']} })
|
|
14257
14625
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
14626
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
14258
14627
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
14259
14628
|
'domain_of': ['ChromatographyConfiguration',
|
|
14260
14629
|
'Extraction',
|
|
@@ -14432,12 +14801,14 @@ class DissolvingProcess(MaterialProcessing):
|
|
|
14432
14801
|
'syntax': '{id_nmdc_prefix}:dispro-{id_shoulder}-{id_blade}$'}}}})
|
|
14433
14802
|
|
|
14434
14803
|
duration: Optional[QuantityValue] = Field(default=None, description="""The elapsed time of an activity.""", json_schema_extra = { "linkml_meta": {'alias': 'duration',
|
|
14804
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'h|min'}},
|
|
14435
14805
|
'domain_of': ['MixingProcess',
|
|
14436
14806
|
'DissolvingProcess',
|
|
14437
14807
|
'ChemicalConversionProcess',
|
|
14438
14808
|
'MobilePhaseSegment'],
|
|
14439
14809
|
'examples': [{'value': "JsonObj(has_numeric_value=2, has_unit='h')"}]} })
|
|
14440
14810
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
14811
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
14441
14812
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
14442
14813
|
'domain_of': ['ChromatographyConfiguration',
|
|
14443
14814
|
'Extraction',
|
|
@@ -14626,12 +14997,14 @@ class ChemicalConversionProcess(MaterialProcessing):
|
|
|
14626
14997
|
chemical_conversion_category: Optional[ChemicalConversionCategoryEnum] = Field(default=None, description="""The type of chemical conversion process.""", json_schema_extra = { "linkml_meta": {'alias': 'chemical_conversion_category',
|
|
14627
14998
|
'domain_of': ['ChemicalConversionProcess']} })
|
|
14628
14999
|
duration: Optional[QuantityValue] = Field(default=None, description="""The elapsed time of an activity.""", json_schema_extra = { "linkml_meta": {'alias': 'duration',
|
|
15000
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'h|min'}},
|
|
14629
15001
|
'domain_of': ['MixingProcess',
|
|
14630
15002
|
'DissolvingProcess',
|
|
14631
15003
|
'ChemicalConversionProcess',
|
|
14632
15004
|
'MobilePhaseSegment'],
|
|
14633
15005
|
'examples': [{'value': "JsonObj(has_numeric_value=2, has_unit='h')"}]} })
|
|
14634
15006
|
temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
|
|
15007
|
+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
|
|
14635
15008
|
'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
|
|
14636
15009
|
'domain_of': ['ChromatographyConfiguration',
|
|
14637
15010
|
'Extraction',
|
|
@@ -14647,7 +15020,10 @@ class ChemicalConversionProcess(MaterialProcessing):
|
|
|
14647
15020
|
'DissolvingProcess',
|
|
14648
15021
|
'ChemicalConversionProcess',
|
|
14649
15022
|
'MobilePhaseSegment']} })
|
|
14650
|
-
substances_volume: Optional[QuantityValue] = Field(default=None, description="""The volume of the combined substances that was included in a ChemicalConversionProcess.""", json_schema_extra = { "linkml_meta": {'alias': 'substances_volume',
|
|
15023
|
+
substances_volume: Optional[QuantityValue] = Field(default=None, description="""The volume of the combined substances that was included in a ChemicalConversionProcess.""", json_schema_extra = { "linkml_meta": {'alias': 'substances_volume',
|
|
15024
|
+
'annotations': {'units_alignment_excuse': {'tag': 'units_alignment_excuse',
|
|
15025
|
+
'value': 'pending_analysis'}},
|
|
15026
|
+
'domain_of': ['ChemicalConversionProcess']} })
|
|
14651
15027
|
instrument_used: Optional[list[str]] = Field(default=None, description="""What instrument was used during DataGeneration or MaterialProcessing.""", json_schema_extra = { "linkml_meta": {'alias': 'instrument_used',
|
|
14652
15028
|
'domain_of': ['MaterialProcessing', 'DataGeneration'],
|
|
14653
15029
|
'structured_pattern': {'interpolated': True,
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@@ -15910,6 +16286,7 @@ class ChromatographyConfiguration(Configuration):
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'domain_of': ['ChromatographyConfiguration',
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'ChromatographicSeparationProcess']} })
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temperature: Optional[QuantityValue] = Field(default=None, description="""The value of a temperature measurement or temperature used in a process.""", json_schema_extra = { "linkml_meta": {'alias': 'temperature',
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+
'annotations': {'storage_units': {'tag': 'storage_units', 'value': 'Cel'}},
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'contributors': ['ORCID:0009-0001-1555-1601', 'ORCID:0000-0002-8683-0050'],
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'domain_of': ['ChromatographyConfiguration',
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'Extraction',
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