nmdc-schema 11.11.0__py3-none-any.whl → 11.11.1__py3-none-any.whl

nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_1.py

@@ -7,11 +7,11 @@ class Migrator(MigratorBase):
     _from_version = "11.10.0"
     _to_version = "11.11.0.part_1"
 
-    def upgrade(self) -> None:
+    def upgrade(self, commit_changes: bool = True) -> None:
         r"""Migrates the database from conforming to the original schema, to conforming to the new schema."""
         self.adapter.do_for_each_document("biosample_set", self.check_for_fields)
 
-    def check_for_fields(self, biosample: dict) -> dict:
+    def check_for_fields(self, biosample: dict) -> None:
         r"""
         Check each biosample record to ensure none of the removed slots are being used. 
         List of the slots that were removed:

nmdc_schema/nmdc-pydantic.py

@@ -27,7 +27,7 @@ from pydantic import (
 
 
 metamodel_version = "None"
-version = "11.11.0"
+version = "11.11.1"
 
 
 class ConfiguredBaseModel(BaseModel):

nmdc_schema/nmdc.py

@@ -1,5 +1,5 @@
 # Auto generated from nmdc.yaml by pythongen.py version: 0.0.1
-# Generation date: 2025-09-17T19:56:03
+# Generation date: 2025-09-19T01:08:09
 # Schema: NMDC
 #
 # id: https://w3id.org/nmdc/nmdc
@@ -60,7 +60,7 @@ from linkml_runtime.linkml_model.types import Boolean, Decimal, Double, Float, I
 from linkml_runtime.utils.metamodelcore import Bool, Decimal, URIorCURIE
 
 metamodel_version = "1.7.0"
-version = "11.11.0"
+version = "11.11.1"
 
 # Namespaces
 BFO = CurieNamespace('BFO', 'http://purl.obolibrary.org/obo/BFO_')

nmdc_schema/nmdc.schema.json

@@ -15555,5 +15555,5 @@
     },
     "title": "NMDC",
     "type": "object",
-    "version": "11.11.0"
+    "version": "11.11.1"
 }

nmdc_schema/nmdc_materialized_patterns.json

@@ -6,7 +6,7 @@
     "not importing any MIxS terms where the relationship between the name (SCN) and the id isn't 1:1"
   ],
   "id": "https://w3id.org/nmdc/nmdc",
-  "version": "11.11.0",
+  "version": "11.11.1",
   "license": "https://creativecommons.org/publicdomain/zero/1.0/",
   "prefixes": {
     "BFO": {

nmdc_schema/nmdc_materialized_patterns.schema.json

@@ -15641,5 +15641,5 @@
     },
     "title": "NMDC",
     "type": "object",
-    "version": "11.11.0"
+    "version": "11.11.1"
 }

nmdc_schema/nmdc_materialized_patterns.yaml

@@ -13,7 +13,7 @@ notes:
 - not importing any MIxS terms where the relationship between the name (SCN) and the
   id isn't 1:1
 id: https://w3id.org/nmdc/nmdc
-version: 11.11.0
+version: 11.11.1
 license: https://creativecommons.org/publicdomain/zero/1.0/
 prefixes:
   BFO:

{nmdc_schema-11.11.0.dist-info → nmdc_schema-11.11.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nmdc_schema
-Version: 11.11.0
+Version: 11.11.1
 Summary: Schema resources for the National Microbiome Data Collaborative (NMDC)
 License: MIT
 License-File: LICENSE

{nmdc_schema-11.11.0.dist-info → nmdc_schema-11.11.1.dist-info}/RECORD

@@ -81,7 +81,7 @@ nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0
 nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0_3_to_11_1_0_part_2.py,sha256=1YsZSBySqadiKPUtH76j61t_iN8sXKZ0pqZCisVahwU,1911
 nmdc_schema/migrators/partials/migrator_from_11_0_3_to_11_1_0/migrator_from_11_0_3_to_11_1_0_part_3.py,sha256=KAWPyUA7JwXvQg6cj4CZSyhYkkdQYG5pMhuy7uUXUZc,2115
 nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/__init__.py,sha256=0Vyyg3SaqNsV426IFeWw1xgEDFAol5J57ggk7bDAAf4,1001
-nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_1.py,sha256=xMUWNbVg_m9he07et39WKDr5VhYHfdoTRpSN9cWFCpQ,3566
+nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_1.py,sha256=JTjgjW8GhpDuNQajNN2EBoDzm6OFJg9E42pR7HDqIiE,3595
 nmdc_schema/migrators/partials/migrator_from_11_10_0_to_11_11_0/migrator_from_11_10_0_to_11_11_0_part_2.py,sha256=cNgxp1XBVKSiQAAhUfLXWvEK8UyJTnveO_c_BqvlCVo,1986
 nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/__init__.py,sha256=e-neqgmL6Zsy6h5PGmWPj9qIqrTm3yvNgo2l2i7Sduc,990
 nmdc_schema/migrators/partials/migrator_from_11_1_0_to_11_2_0/migrator_from_11_1_0_to_11_2_0_part_1.py,sha256=4nN_2iZqML84R9EgznIcj7FjIlRHSSM8XqLerUgMYbI,13230
@@ -102,17 +102,17 @@ nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/__init__.py,sha25
 nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_1.py,sha256=6MYmrB9yfJ3XFb2QabTcJeycK2tyVO3MtSItns2s9Zg,35421
 nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_2.py,sha256=wzard2sUTeRS7voVTfPt3_OtafTffnv0o0OyE1OBzA0,2987
 nmdc_schema/migrators/partials/migrator_from_11_9_1_to_11_10_0/migrator_from_11_9_1_to_11_10_0_part_3.py,sha256=crm2NEmn0xepEMKWHvCSkfX3G6hRn377f38rq24XlO8,3710
-nmdc_schema/nmdc-pydantic.py,sha256=JKxC9vJdaRKfTNcs2NkCelmasLXa5xrcrLuYNJ2q5Fc,1425683
-nmdc_schema/nmdc.py,sha256=eQScds1yaDm5RK7-mwEDpDJWE6Fo2j5-zb7gMJzGzmU,716776
-nmdc_schema/nmdc.schema.json,sha256=8yaGu3dQ1hXw90nCdVtiir0Se1Sn8rQjXhS4q0wmLNM,622632
+nmdc_schema/nmdc-pydantic.py,sha256=T0c6vB4cui4HMuTBKboAka30kcINRpTkcMsWnv37Yro,1425683
+nmdc_schema/nmdc.py,sha256=W2SglKly9g1FEXrFiBCTsLjcQAXDO9-zv9Wa-r1FZkE,716776
+nmdc_schema/nmdc.schema.json,sha256=Q_rD8LIpepvcyUMzkVxcy4azuq4Vzq7wnxqyV_O955A,622632
 nmdc_schema/nmdc_data.py,sha256=_wNKi5NDxuvvRsJEim2ialX7VJkDBJLRpiTOPpFHBm8,9608
-nmdc_schema/nmdc_materialized_patterns.json,sha256=hjiO2g64baSTIfAXMEFgFU7QFLe9nVPqdsIuEAzpFvM,901987
-nmdc_schema/nmdc_materialized_patterns.schema.json,sha256=3s0V_-HduLwZt1MrfPEbnFu-BySN6gtppbcZ_gN1HWE,630915
-nmdc_schema/nmdc_materialized_patterns.yaml,sha256=5Kl9rTknb19Ylgvk8LXCxpnGWWD1xK8xrmDhJZi8Ay0,698448
+nmdc_schema/nmdc_materialized_patterns.json,sha256=MGJWCRnbofHB2992Z6PppkwJJHCqT9WAJh0zMzbvjlQ,901987
+nmdc_schema/nmdc_materialized_patterns.schema.json,sha256=JiEGqUy09djqkws28w_DR2yqvKt8srlUfqMaWsV4EvE,630915
+nmdc_schema/nmdc_materialized_patterns.yaml,sha256=BvlOiASFH0V0I8Rlxvrh91BEyE6CntkhuP-LPAeESB4,698448
 nmdc_schema/nmdc_version.py,sha256=DsfEKnmN3LHR831WWELxyfZY6rnP9U8tfygamkrsaHY,2305
 nmdc_schema/validate_nmdc_json.py,sha256=PVJV2O1qQXMi206HaUKqRNLiLc164OpNYKPURSKN8_E,3148
-nmdc_schema-11.11.0.dist-info/METADATA,sha256=9s-DP8ligfI85nryRhBoxfpqmHMvgOQZyiq5qCDKdwE,5899
-nmdc_schema-11.11.0.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
-nmdc_schema-11.11.0.dist-info/entry_points.txt,sha256=ioyD5P6op5Zy68bqg5MafLAryb73rfzyx8YXKItroC8,1531
-nmdc_schema-11.11.0.dist-info/licenses/LICENSE,sha256=ogEPNDSH0_dhiv_lT3ifVIdgIzHAqNA_SemnxUfPBJk,7048
-nmdc_schema-11.11.0.dist-info/RECORD,,
+nmdc_schema-11.11.1.dist-info/METADATA,sha256=mdoZkUNR001uccR7KyaZUW07n_KlfDtAf9Pf_iu6URY,5899
+nmdc_schema-11.11.1.dist-info/WHEEL,sha256=M5asmiAlL6HEcOq52Yi5mmk9KmTVjY2RDPtO4p9DMrc,88
+nmdc_schema-11.11.1.dist-info/entry_points.txt,sha256=ioyD5P6op5Zy68bqg5MafLAryb73rfzyx8YXKItroC8,1531
+nmdc_schema-11.11.1.dist-info/licenses/LICENSE,sha256=ogEPNDSH0_dhiv_lT3ifVIdgIzHAqNA_SemnxUfPBJk,7048
+nmdc_schema-11.11.1.dist-info/RECORD,,