nmdc-runtime 2.11.0__py3-none-any.whl → 2.11.1__py3-none-any.whl

nmdc_runtime/Dockerfile

@@ -85,13 +85,17 @@ ENV PATH="/root/.local/bin/:$PATH"
 #       instead of when the container is running. By default, `uv` defers this compilation
 #       to "import time," whereas `pip` (by default) performs it at "install time" (like this).
 #
+# Note: We use `--locked` so that `uv sync` exits with an error if the `uv.lock` file isn't _already_
+#       up to date. By default, `uv sync` would automatically update the lock file if necessary.
+#       Reference: https://docs.astral.sh/uv/reference/cli/#uv-sync--locked
+#
 ENV VIRTUAL_ENV="/venv"
 RUN mkdir -p "${VIRTUAL_ENV}"
 COPY ./pyproject.toml /code/pyproject.toml
 COPY ./uv.lock        /code/uv.lock
 RUN --mount=type=cache,target=/root/.cache/uv \
     cd /code && \
-    UV_LINK_MODE=copy uv sync --active --no-dev --no-install-project --compile-bytecode
+    UV_LINK_MODE=copy uv sync --active --no-dev --no-install-project --compile-bytecode --locked
 
 # ────────────────────────────────────────────────────────────────────────────┐
 FROM base AS fastapi
@@ -103,12 +107,18 @@ COPY . /code
 # Install the project in editable mode.
 RUN --mount=type=cache,target=/root/.cache/uv \
     cd /code && \
-    uv sync --active --no-dev
+    uv sync --active --no-dev --compile-bytecode --locked
 
 # Use Uvicorn to serve the FastAPI app on port 8000.
+#
+# Note: We include the `--no-sync` option to prevent `uv run` from automatically syncing dependencies.
+#       If it were to sync dependencies at this point, it would install development dependencies, since
+#       we exclude them above, but they are listed in uv's `default-groups` configuration by default.
+#       This is explained at: https://github.com/astral-sh/uv/issues/12558#issuecomment-2764611918
+#
 EXPOSE 8000
 WORKDIR /code
-CMD ["uv", "run", "--active", "uvicorn", "nmdc_runtime.api.main:app", "--proxy-headers", "--host", "0.0.0.0", "--port", "8000"]
+CMD ["uv", "run", "--active", "--no-sync", "uvicorn", "nmdc_runtime.api.main:app", "--proxy-headers", "--host", "0.0.0.0", "--port", "8000"]
 
 # ────────────────────────────────────────────────────────────────────────────┐
 FROM base AS dagster
@@ -124,7 +134,7 @@ COPY . /opt/dagster/lib
 # Install the project in editable mode.
 RUN --mount=type=cache,target=/root/.cache/uv \
     cd /opt/dagster/lib && \
-    uv sync --active --no-dev
+    uv sync --active --no-dev --compile-bytecode --locked
 
 # Move Dagster configuration files to the place Dagster expects.
 ENV DAGSTER_HOME="/opt/dagster/dagster_home/"
@@ -154,7 +164,7 @@ COPY . /code
 # Install the project in editable mode, and install development dependencies.
 RUN --mount=type=cache,target=/root/.cache/uv \
     cd /code && \
-    uv sync --active
+    uv sync --active --compile-bytecode --locked
 
 # Make `wait-for-it.sh` executable.
 RUN chmod +x /code/.docker/wait-for-it.sh

nmdc_runtime/site/entrypoint-daemon.sh

@@ -23,4 +23,4 @@ file_env() {
 file_env "MONGO_PASSWORD"
 file_env "DAGSTER_POSTGRES_PASSWORD"
 
-exec uv run --active dagster-daemon run
+exec uv run --active --no-sync dagster-daemon run

nmdc_runtime/site/entrypoint-dagit-readonly.sh

@@ -23,4 +23,4 @@ file_env() {
 file_env "MONGO_PASSWORD"
 file_env "DAGSTER_POSTGRES_PASSWORD"
 
-exec uv run --active dagit -h 0.0.0.0 -p 3000 -w workspace.yaml --read-only
+exec uv run --active --no-sync dagit -h 0.0.0.0 -p 3000 -w workspace.yaml --read-only

nmdc_runtime/site/entrypoint-dagit.sh

@@ -23,4 +23,4 @@ file_env() {
 file_env "MONGO_PASSWORD"
 file_env "DAGSTER_POSTGRES_PASSWORD"
 
-exec uv run --active dagit -h 0.0.0.0 -p 3000 -w workspace.yaml
+exec uv run --active --no-sync dagit -h 0.0.0.0 -p 3000 -w workspace.yaml

{nmdc_runtime-2.11.0.dist-info → nmdc_runtime-2.11.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: nmdc-runtime
-Version: 2.11.0
+Version: 2.11.1
 Summary: A runtime system for NMDC data management and orchestration
 Project-URL: Changelog, https://github.com/microbiomedata/nmdc-runtime/releases
 Project-URL: Documentation, https://docs.microbiomedata.org/runtime

{nmdc_runtime-2.11.0.dist-info → nmdc_runtime-2.11.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-nmdc_runtime/Dockerfile,sha256=3CyLW_4PRP-8cpwJHAiP4u_n736de-TJmi0dcVXbP1s,9257
+nmdc_runtime/Dockerfile,sha256=X6_f-HX993Q6PH5J9mf01-3w0dSs_5tfUX7Eq7RzugE,10052
 nmdc_runtime/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nmdc_runtime/config.py,sha256=fVxcqdXv13Fa9CSRPnFIsfmvmlos8o4SFUZcmsXfX_8,2020
 nmdc_runtime/main.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -79,9 +79,9 @@ nmdc_runtime/minter/entrypoints/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm
 nmdc_runtime/minter/entrypoints/fastapi_app.py,sha256=I_lgExs6g1MRpMQdpedrnYdA1L7r_TBi4RiiD8ogrkM,4015
 nmdc_runtime/site/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nmdc_runtime/site/dagster.yaml,sha256=VCFx2naLjaNzP8AYr5uvzxRIf4fC0mHm7cctcYsVrNA,1204
-nmdc_runtime/site/entrypoint-daemon.sh,sha256=kTc9dQqzR0eQ9TBZcOeeYRXBOKRe05A1INRFes-z3hw,513
-nmdc_runtime/site/entrypoint-dagit-readonly.sh,sha256=ZY-K3l6apK8jA4mjcxePsjWb4_rh-WKz3CHmvvK_zj0,549
-nmdc_runtime/site/entrypoint-dagit.sh,sha256=TWEIAyKyCEMHX5XnbGLO0xdhYNgeXsxgs1GFnr2Avms,537
+nmdc_runtime/site/entrypoint-daemon.sh,sha256=voB8pm8zxOXYlTAmUae6_1r5Abomp5E67_SfTdrKN4s,523
+nmdc_runtime/site/entrypoint-dagit-readonly.sh,sha256=RwHiDxIzPB9_wIvdIMRvTPcWKXl2tRpQtXITTioAvAc,559
+nmdc_runtime/site/entrypoint-dagit.sh,sha256=Y310ny5a4aSlTF8WHHRO0c-YGKJEPZV5DSF-eP1nxUo,547
 nmdc_runtime/site/graphs.py,sha256=KeC6SKFNUW6SGubruFRrZsfBRN6tUfc3tp6tEst8bMU,17910
 nmdc_runtime/site/ops.py,sha256=RainLCYEvgglHqgwJWdHu4C15W3DxKOx428vxZSIK_Q,62974
 nmdc_runtime/site/repository.py,sha256=Kcdt293K1irWcmw7R9L-5sTEBhdoaIdgdM0mgFNrMMc,44117
@@ -121,8 +121,8 @@ nmdc_runtime/static/NMDC_logo.svg,sha256=-13FrhQMWOg7FMprd3p6dwSOEf8xWkrHJB_P-nx
 nmdc_runtime/static/ORCID-iD_icon_vector.svg,sha256=JOKAW7lAn7Giws6aS_jBQGYG4DoPUBQ5S5mgmCSwmcA,973
 nmdc_runtime/static/README.md,sha256=g0fitEFvZfBcSWzgjOxzDdfouBlq95xFKpAag0VPzL4,397
 nmdc_runtime/static/favicon.ico,sha256=FsOefOmgCU9fp2f1FxKimZ8zHg7mBYj_Cv70S5VIcuI,15086
-nmdc_runtime-2.11.0.dist-info/METADATA,sha256=_lp2sVUd9rtPOgYgMSkF6TOgmIDSV9pT-mhr8hGtjTg,1470
-nmdc_runtime-2.11.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-nmdc_runtime-2.11.0.dist-info/entry_points.txt,sha256=JxdvOnvxHK_8046cwlvE30s_fV0-k-eTpQtkKYA69nQ,224
-nmdc_runtime-2.11.0.dist-info/licenses/LICENSE,sha256=VWiv65r7gHGjgtr3jMJYVmQny5GRpQ6H-W9sScb1x70,2408
-nmdc_runtime-2.11.0.dist-info/RECORD,,
+nmdc_runtime-2.11.1.dist-info/METADATA,sha256=9NE56U8OzsgQaRqC8Xx06QZwDGW4OeHjqiePSsmP2pk,1470
+nmdc_runtime-2.11.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+nmdc_runtime-2.11.1.dist-info/entry_points.txt,sha256=JxdvOnvxHK_8046cwlvE30s_fV0-k-eTpQtkKYA69nQ,224
+nmdc_runtime-2.11.1.dist-info/licenses/LICENSE,sha256=VWiv65r7gHGjgtr3jMJYVmQny5GRpQ6H-W9sScb1x70,2408
+nmdc_runtime-2.11.1.dist-info/RECORD,,