nmdc-runtime 1.4.0__py3-none-any.whl → 1.4.1__py3-none-any.whl

nmdc_runtime/site/export/study_metadata.py

@@ -1,6 +1,7 @@
 """
 Get NMDC study-associated metadata from search api
 """
+
 import csv
 from io import StringIO
 

nmdc_runtime/site/translation/emsl.py

@@ -1,6 +1,7 @@
 """
 Translates EMSL data into JSON conformant with the NMDC JSON schema
 """
+
 from dagster import op, graph
 
 from nmdc_runtime.lib.nmdc_etl_class import NMDC_ETL

nmdc_runtime/site/translation/jgi.py

@@ -1,6 +1,7 @@
 """
 Translates EMSL data into JSON conformant with the NMDC JSON schema
 """
+
 from dagster import op, graph
 
 from nmdc_runtime.lib.nmdc_etl_class import NMDC_ETL

nmdc_runtime/site/translation/neon_soil_translator.py

@@ -160,11 +160,11 @@ class NeonSoilDataTranslator(Translator):
                 biosample_row["CNratio"].values[0], None
             ),
             ph=_create_double_value(biosample_row["soilInWaterpH"].values[0]),
-            water_content=[
-                f"{biosample_row['soilMoisture'].values[0]} g of water/g of dry soil"
-            ]
-            if not biosample_row["soilMoisture"].isna().any()
-            else None,
+            water_content=(
+                [f"{biosample_row['soilMoisture'].values[0]} g of water/g of dry soil"]
+                if not biosample_row["soilMoisture"].isna().any()
+                else None
+            ),
             ammonium_nitrogen=_create_quantity_value(
                 biosample_row["kclAmmoniumNConc"].values[0], "mg/L"
             ),

nmdc_runtime/site/validation/emsl.py

@@ -1,6 +1,7 @@
 """
 Validates data in the EMSL collection in the nmdc_etl_staging database.
 """
+
 from dagster import op, graph
 from nmdc_runtime.site.validation.util import (
     preset_prod,

nmdc_runtime/site/validation/gold.py

@@ -1,6 +1,7 @@
 """
 Validates data in the GOLD collection in the nmdc_etl_staging database.
 """
+
 from dagster import op, graph
 from nmdc_runtime.site.validation.util import (
     preset_prod,

nmdc_runtime/site/validation/jgi.py

@@ -1,6 +1,7 @@
 """
 Validates data in the JGI collection in the nmdc_etl_staging database.
 """
+
 from dagster import op, graph
 
 from nmdc_runtime.site.ops import local_file_to_api_object

{nmdc_runtime-1.4.0.dist-info → nmdc_runtime-1.4.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: nmdc_runtime
-Version: 1.4.0
+Version: 1.4.1
 Summary: A runtime system for NMDC data management and orchestration
 Home-page: https://github.com/microbiomedata/nmdc-runtime
 Author: Donny Winston

{nmdc_runtime-1.4.0.dist-info → nmdc_runtime-1.4.1.dist-info}/RECORD

@@ -50,7 +50,7 @@ nmdc_runtime/site/drsobjects/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NM
 nmdc_runtime/site/drsobjects/ingest.py,sha256=pcMP69WSzFHFqHB9JIL55ePFhilnCLRc2XHCQ97w1Ik,3107
 nmdc_runtime/site/drsobjects/registration.py,sha256=D1T3QUuxEOxqKZIvB5rkb_6ZxFZiA-U9SMPajyeWC2Y,3572
 nmdc_runtime/site/export/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nmdc_runtime/site/export/study_metadata.py,sha256=3X0Lh85WCExhamWPeAOrUIcf5JvxCabWNH6F7n5xxyU,4026
+nmdc_runtime/site/export/study_metadata.py,sha256=d3q6RV93B0BA64ZkfCPEHdlrC1P8pm9Sj6SxRDcpB7A,4027
 nmdc_runtime/site/normalization/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nmdc_runtime/site/normalization/gold.py,sha256=iISDD4qs4d6uLhv631WYNeQVOzY5DO201ZpPtxHdkVk,1311
 nmdc_runtime/site/terminusdb/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -58,24 +58,24 @@ nmdc_runtime/site/terminusdb/generate.py,sha256=Z3c06LDx3TGw4pvPRO97caQvzc8SuhGm
 nmdc_runtime/site/terminusdb/ingest.py,sha256=WE_V4vRRnlL6hIBU1TDSUheYOBWS9d5g6FHPS64jzvM,1245
 nmdc_runtime/site/terminusdb/schema.py,sha256=3e39rHUSZsNbN_F0SHHNsvcEGRWtYa6O9KNj3cH3tUs,77129
 nmdc_runtime/site/translation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nmdc_runtime/site/translation/emsl.py,sha256=l6Q9Jj3RNJFQNYAU_TtKTJ7cyFcR93xBRs_lLdX0bMQ,1244
+nmdc_runtime/site/translation/emsl.py,sha256=-aCTJTSCNaK-Koh8BE_4fTf5nyxP1KkquR6lloLEJl0,1245
 nmdc_runtime/site/translation/gold.py,sha256=R3W99sdQb7Pgu_esN7ruIC-tyREQD_idJ4xCzkqWuGw,1622
 nmdc_runtime/site/translation/gold_translator.py,sha256=8i5FxrgAG4rLbM0mcCSBaZEzyReht6xwmpm4xeX4HwI,26451
-nmdc_runtime/site/translation/jgi.py,sha256=bh73r0uq5BT3ywXwIa1OEKKtz9LbFsSng472tdr-xtg,875
+nmdc_runtime/site/translation/jgi.py,sha256=qk878KhIw674TkrVfbl2x1QJrKi3zlvE0vesIpe9slM,876
 nmdc_runtime/site/translation/neon_benthic_translator.py,sha256=e_7tXFrP0PpdhqUCxXmOaFViSuG36IIMDqyj3FHLcgQ,23069
-nmdc_runtime/site/translation/neon_soil_translator.py,sha256=x-FfNKsIv0efgxty9v4wOxNu5nrrS-N8phx12IqfLOI,37624
+nmdc_runtime/site/translation/neon_soil_translator.py,sha256=cJJ_QPva5G5SIT_7DjCSsqbDvgbiKGqUYrxK3nx7_Lw,37634
 nmdc_runtime/site/translation/neon_utils.py,sha256=k8JYMnm-L981BTOdAMomR1CulS_Hz5v7aYxrJ94KEJc,5086
 nmdc_runtime/site/translation/submission_portal_translator.py,sha256=lHcrfPR5wk3BcZ0Uw5zUyWu5XRVikgOzdzSb5nFVS9I,27964
 nmdc_runtime/site/translation/translator.py,sha256=xM9dM-nTgSWwu5HFoUVNHf8kqk9iiH4PgWdSx4OKxEk,601
 nmdc_runtime/site/translation/util.py,sha256=w_l3SiExGsl6cXRqto0a_ssDmHkP64ITvrOVfPxmNpY,4366
 nmdc_runtime/site/validation/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nmdc_runtime/site/validation/emsl.py,sha256=TgckqKkFquHDLso77sn-jZRu5ZaBevGCt5p8e3AqOak,670
-nmdc_runtime/site/validation/gold.py,sha256=kJ1L081SZb-8qKpF731r5aQOueM206SUfUYMTTNTFMc,802
-nmdc_runtime/site/validation/jgi.py,sha256=lBo-FCtEYedT74CpW-Kdj512Ib963ik-4YIYmY5puDo,1298
+nmdc_runtime/site/validation/emsl.py,sha256=OG20mv_3E2rkQqTQtYO0_SVRqFb-Z_zKCiAVbty6Wl0,671
+nmdc_runtime/site/validation/gold.py,sha256=Z5ZzYdjERbrJ2Tu06d0TDTBSfwaFdL1Z23Rl-YkZ2Ow,803
+nmdc_runtime/site/validation/jgi.py,sha256=LdJfhqBVHWCDp0Kzyk8eJZMwEI5NQ-zuTda31BcGwOA,1299
 nmdc_runtime/site/validation/util.py,sha256=GGbMDSwR090sr_E_fHffCN418gpYESaiot6XghS7OYk,3349
-nmdc_runtime-1.4.0.dist-info/LICENSE,sha256=VWiv65r7gHGjgtr3jMJYVmQny5GRpQ6H-W9sScb1x70,2408
-nmdc_runtime-1.4.0.dist-info/METADATA,sha256=bG02M6nS9fbyV6X4og_-korEJcraor4JB7HAoNG_B_U,7424
-nmdc_runtime-1.4.0.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-nmdc_runtime-1.4.0.dist-info/entry_points.txt,sha256=nfH6-K9tDKv7va8ENfShsBnxVQoYJdEe7HHdwtkbh1Y,289
-nmdc_runtime-1.4.0.dist-info/top_level.txt,sha256=b0K1s09L_iHH49ueBKaLrB5-lh6cyrSv9vL6x4Qvyz8,13
-nmdc_runtime-1.4.0.dist-info/RECORD,,
+nmdc_runtime-1.4.1.dist-info/LICENSE,sha256=VWiv65r7gHGjgtr3jMJYVmQny5GRpQ6H-W9sScb1x70,2408
+nmdc_runtime-1.4.1.dist-info/METADATA,sha256=QRvSPIktGtVUNru7Eg_rMufxfkFxdKSaYv4fNwYu_q4,7424
+nmdc_runtime-1.4.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+nmdc_runtime-1.4.1.dist-info/entry_points.txt,sha256=nfH6-K9tDKv7va8ENfShsBnxVQoYJdEe7HHdwtkbh1Y,289
+nmdc_runtime-1.4.1.dist-info/top_level.txt,sha256=b0K1s09L_iHH49ueBKaLrB5-lh6cyrSv9vL6x4Qvyz8,13
+nmdc_runtime-1.4.1.dist-info/RECORD,,

{nmdc_runtime-1.4.0.dist-info → nmdc_runtime-1.4.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any