nltools 0.6.0.dev0__py3-none-any.whl

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Files changed (95) hide show
  1. nltools/__init__.py +55 -0
  2. nltools/algorithms/__init__.py +90 -0
  3. nltools/algorithms/alignment/__init__.py +21 -0
  4. nltools/algorithms/alignment/procrustes.py +565 -0
  5. nltools/algorithms/alignment/srm.py +758 -0
  6. nltools/algorithms/backends.py +1059 -0
  7. nltools/algorithms/corrections.py +177 -0
  8. nltools/algorithms/decoding.py +327 -0
  9. nltools/algorithms/inference/__init__.py +50 -0
  10. nltools/algorithms/inference/bootstrap.py +1386 -0
  11. nltools/algorithms/inference/correlation.py +373 -0
  12. nltools/algorithms/inference/intersubject.py +422 -0
  13. nltools/algorithms/inference/isc.py +1554 -0
  14. nltools/algorithms/inference/matrix.py +602 -0
  15. nltools/algorithms/inference/one_sample.py +288 -0
  16. nltools/algorithms/inference/random.py +122 -0
  17. nltools/algorithms/inference/timeseries.py +347 -0
  18. nltools/algorithms/inference/two_sample.py +212 -0
  19. nltools/algorithms/inference/utils.py +58 -0
  20. nltools/algorithms/inference/validation.py +282 -0
  21. nltools/algorithms/neighborhoods.py +207 -0
  22. nltools/algorithms/outliers.py +308 -0
  23. nltools/algorithms/regression.py +83 -0
  24. nltools/algorithms/signal.py +303 -0
  25. nltools/algorithms/similarity.py +234 -0
  26. nltools/algorithms/validation.py +151 -0
  27. nltools/cross_validation.py +72 -0
  28. nltools/data/__init__.py +30 -0
  29. nltools/data/adjacency/__init__.py +875 -0
  30. nltools/data/adjacency/io.py +111 -0
  31. nltools/data/adjacency/modeling.py +569 -0
  32. nltools/data/adjacency/plotting.py +174 -0
  33. nltools/data/adjacency/state.py +349 -0
  34. nltools/data/adjacency/stats.py +596 -0
  35. nltools/data/adjacency/utils.py +79 -0
  36. nltools/data/atlases/__init__.py +23 -0
  37. nltools/data/atlases/labeling.py +158 -0
  38. nltools/data/atlases/loading.py +76 -0
  39. nltools/data/atlases/registry.py +96 -0
  40. nltools/data/atlases/reporting.py +456 -0
  41. nltools/data/braindata/__init__.py +2170 -0
  42. nltools/data/braindata/analysis.py +1381 -0
  43. nltools/data/braindata/bootstrap.py +398 -0
  44. nltools/data/braindata/io.py +896 -0
  45. nltools/data/braindata/modeling.py +594 -0
  46. nltools/data/braindata/plotting.py +501 -0
  47. nltools/data/braindata/prediction.py +1250 -0
  48. nltools/data/braindata/utils.py +348 -0
  49. nltools/data/braindata/validation.py +197 -0
  50. nltools/data/braindata/viewer.js +266 -0
  51. nltools/data/braindata/viewer.py +770 -0
  52. nltools/data/combine.py +27 -0
  53. nltools/data/designmatrix/__init__.py +1032 -0
  54. nltools/data/designmatrix/append.py +518 -0
  55. nltools/data/designmatrix/diagnostics.py +248 -0
  56. nltools/data/designmatrix/io.py +356 -0
  57. nltools/data/designmatrix/plotting.py +291 -0
  58. nltools/data/designmatrix/regressors.py +463 -0
  59. nltools/data/designmatrix/transforms.py +200 -0
  60. nltools/data/designmatrix/utils.py +350 -0
  61. nltools/data/ownership.py +129 -0
  62. nltools/data/results.py +291 -0
  63. nltools/data/roc/__init__.py +398 -0
  64. nltools/data/simulator/__init__.py +927 -0
  65. nltools/data/simulator/haxby.py +124 -0
  66. nltools/data/validation.py +83 -0
  67. nltools/datasets.py +218 -0
  68. nltools/io/__init__.py +10 -0
  69. nltools/io/events.py +67 -0
  70. nltools/io/h5.py +246 -0
  71. nltools/mask.py +403 -0
  72. nltools/models/__init__.py +11 -0
  73. nltools/models/glm.py +543 -0
  74. nltools/models/results.py +49 -0
  75. nltools/models/ridge.py +1303 -0
  76. nltools/models/validation.py +26 -0
  77. nltools/plotting/__init__.py +32 -0
  78. nltools/plotting/adjacency.py +421 -0
  79. nltools/plotting/brain.py +669 -0
  80. nltools/plotting/decomposition.py +111 -0
  81. nltools/plotting/prediction.py +110 -0
  82. nltools/resources/covariates_example.csv +161 -0
  83. nltools/resources/onsets_example.csv +40 -0
  84. nltools/templates/__init__.py +51 -0
  85. nltools/templates/config.py +144 -0
  86. nltools/templates/fetch.py +260 -0
  87. nltools/templates/matching.py +183 -0
  88. nltools/templates/paths.py +106 -0
  89. nltools/templates/registry.py +25 -0
  90. nltools/utils.py +230 -0
  91. nltools/version.py +13 -0
  92. nltools-0.6.0.dev0.dist-info/METADATA +95 -0
  93. nltools-0.6.0.dev0.dist-info/RECORD +95 -0
  94. nltools-0.6.0.dev0.dist-info/WHEEL +4 -0
  95. nltools-0.6.0.dev0.dist-info/licenses/LICENSE +21 -0
nltools/data/combine.py ADDED
@@ -0,0 +1,27 @@
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+ """Stacking data objects of one class into a single object."""
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+
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+
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+ def concatenate(data):
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+ """Concatenate a list of `BrainData` or `Adjacency` objects.
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+
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+ Args:
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+ data (list[BrainData] | list[Adjacency]): Objects to concatenate; all must
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+ be of the same class.
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+
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+ Returns:
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+ BrainData | Adjacency: A single object holding every input in order.
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+
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+ Raises:
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+ ValueError: If `data` is not a list or mixes classes.
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+ """
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+
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+ if not isinstance(data, list):
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+ raise ValueError("Make sure you are passing a list of objects.")
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+
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+ if all(isinstance(x, data[0].__class__) for x in data):
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+ out = data[0].__class__()
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+ for i in data:
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+ out = out.append(i)
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+ else:
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+ raise ValueError("Make sure all objects in the list are the same type.")
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+ return out