nkululeko 0.81.6__py3-none-any.whl → 0.82.0__py3-none-any.whl

nkululeko/constants.py

@@ -1,2 +1,2 @@
-VERSION="0.81.6"
+VERSION="0.82.0"
 SAMPLING_RATE = 16000

nkululeko/feat_extract/feats_agender.py

@@ -9,16 +9,17 @@ import numpy as np
 import audinterface
 
 
-class AudModelAgenderSet(Featureset):
+class AgenderSet(Featureset):
     """
     Embeddings from the wav2vec2. based model finetuned on agender data, described in the paper
     "Speech-based Age and Gender Prediction with Transformers"
     https://arxiv.org/abs/2306.16962
     """
 
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type):
+        super().__init__(name, data_df, feats_type)
         self.model_loaded = False
+        self.feats_type = feats_type
 
     def _load_model(self):
         model_url = "https://zenodo.org/record/7761387/files/w2v2-L-robust-6-age-gender.25c844af-1.1.1.zip"
@@ -28,7 +29,8 @@ class AudModelAgenderSet(Featureset):
         if not os.path.isdir(model_root):
             cache_root = audeer.mkdir("cache")
             model_root = audeer.mkdir(model_root)
-            archive_path = audeer.download_url(model_url, cache_root, verbose=True)
+            archive_path = audeer.download_url(
+                model_url, cache_root, verbose=True)
             audeer.extract_archive(archive_path, model_root)
         device = self.util.config_val("MODEL", "device", "cpu")
         self.model = audonnx.load(model_root, device=device)

nkululeko/feat_extract/feats_auddim.py

@@ -21,9 +21,10 @@ class AuddimSet(Featureset):
     https://arxiv.org/abs/2203.07378.
     """
 
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type):
+        super().__init__(name, data_df, feats_type)
         self.model_loaded = False
+        self.feats_types = feats_type
 
     def _load_model(self):
         model_url = "https://zenodo.org/record/6221127/files/w2v2-L-robust-12.6bc4a7fd-1.1.0.zip"
@@ -31,7 +32,8 @@ class AuddimSet(Featureset):
         if not os.path.isdir(model_root):
             cache_root = audeer.mkdir("cache")
             model_root = audeer.mkdir(model_root)
-            archive_path = audeer.download_url(model_url, cache_root, verbose=True)
+            archive_path = audeer.download_url(
+                model_url, cache_root, verbose=True)
             audeer.extract_archive(archive_path, model_root)
         cuda = "cuda" if torch.cuda.is_available() else "cpu"
         device = self.util.config_val("MODEL", "device", cuda)

nkululeko/feat_extract/feats_audmodel.py

@@ -19,9 +19,10 @@ class AudmodelSet(Featureset):
     https://arxiv.org/abs/2203.07378.
     """
 
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type):
+        super().__init__(name, data_df, feats_type)
         self.model_loaded = False
+        self.feats_type = feats_type
 
     def _load_model(self):
         model_url = "https://zenodo.org/record/6221127/files/w2v2-L-robust-12.6bc4a7fd-1.1.0.zip"
@@ -29,7 +30,8 @@ class AudmodelSet(Featureset):
         if not os.path.isdir(model_root):
             cache_root = audeer.mkdir("cache")
             model_root = audeer.mkdir(model_root)
-            archive_path = audeer.download_url(model_url, cache_root, verbose=True)
+            archive_path = audeer.download_url(
+                model_url, cache_root, verbose=True)
             audeer.extract_archive(archive_path, model_root)
         cuda = "cuda" if torch.cuda.is_available() else "cpu"
         device = self.util.config_val("MODEL", "device", cuda)

nkululeko/feat_extract/feats_clap.py

@@ -11,14 +11,15 @@ import laion_clap
 import audiofile
 
 
-class Clap(Featureset):
+class ClapSet(Featureset):
     """Class to extract laion's clap embeddings (https://github.com/LAION-AI/CLAP)"""
 
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feats_type):
         """Constructor. is_train is needed to distinguish from test/dev sets, because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feats_type)
         self.device = self.util.config_val("MODEL", "device", "cpu")
         self.model_initialized = False
+        self.feat_type = feats_type
 
     def init_model(self):
         # load model
@@ -32,12 +33,14 @@ class Clap(Featureset):
         store = self.util.get_path("store")
         store_format = self.util.config_val("FEATS", "store_format", "pkl")
         storage = f"{store}{self.name}.{store_format}"
-        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        extract = self.util.config_val(
+            "FEATS", "needs_feature_extraction", False)
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or no_reuse or not os.path.isfile(storage):
             if not self.model_initialized:
                 self.init_model()
-            self.util.debug("extracting clap embeddings, this might take a while...")
+            self.util.debug(
+                "extracting clap embeddings, this might take a while...")
             emb_series = pd.Series(index=self.data_df.index, dtype=object)
             length = len(self.data_df.index)
             for idx, (file, start, end) in enumerate(
@@ -51,7 +54,8 @@ class Clap(Featureset):
                 )
                 emb = self.get_embeddings(signal, sampling_rate)
                 emb_series[idx] = emb
-            self.df = pd.DataFrame(emb_series.values.tolist(), index=self.data_df.index)
+            self.df = pd.DataFrame(
+                emb_series.values.tolist(), index=self.data_df.index)
             self.util.write_store(self.df, storage, store_format)
             try:
                 glob_conf.config["DATA"]["needs_feature_extraction"] = "false"

nkululeko/feat_extract/feats_hubert.py

@@ -1,6 +1,7 @@
 # feats_hubert.py
 # HuBERT feature extractor for Nkululeko
-# example feat_type = "hubert-large-ll60k", "hubert-xlarge-ll60k"
+# example feat_type = "hubert-large-ll60k", "hubert-xlarge-ll60k",
+# "hubert-base-ls960", hubert-large-ls960-ft", "hubert-xlarge-ls960-ft"
 
 
 import os
@@ -22,7 +23,7 @@ class Hubert(Featureset):
     def __init__(self, name, data_df, feat_type):
         """Constructor. is_train is needed to distinguish from test/dev sets,
         because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feat_type)
         # check if device is not set, use cuda if available
         cuda = "cuda" if torch.cuda.is_available() else "cpu"
         self.device = self.util.config_val("MODEL", "device", cuda)

nkululeko/feat_extract/feats_import.py

@@ -11,8 +11,8 @@ from nkululeko.feat_extract.featureset import Featureset
 class ImportSet(Featureset):
     """Class to import features that have been compiled elsewhere"""
 
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type):
+        super().__init__(name, data_df, feats_type)
 
     def extract(self):
         """Import the features."""

nkululeko/feat_extract/feats_mos.py

@@ -27,9 +27,9 @@ from nkululeko.feat_extract.featureset import Featureset
 class MosSet(Featureset):
     """Class to predict MOS (mean opinion score)"""
 
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feats_type):
         """Constructor. is_train is needed to distinguish from test/dev sets, because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feats_type)
         self.device = self.util.config_val("MODEL", "device", "cpu")
         self.model_initialized = False
 

nkululeko/feat_extract/feats_opensmile.py

@@ -8,31 +8,21 @@ import opensmile
 
 
 class Opensmileset(Featureset):
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type=None, config_file=None):
+        super().__init__(name, data_df, feats_type)
         self.featset = self.util.config_val("FEATS", "set", "eGeMAPSv02")
         try:
             self.feature_set = eval(f"opensmile.FeatureSet.{self.featset}")
-            #'eGeMAPSv02, ComParE_2016, GeMAPSv01a, eGeMAPSv01a':
+            # 'eGeMAPSv02, ComParE_2016, GeMAPSv01a, eGeMAPSv01a':
         except AttributeError:
-            self.util.error(
-                f"something is wrong with feature set: {self.featset}"
-            )
+            self.util.error(f"something is wrong with feature set: {self.featset}")
         self.featlevel = self.util.config_val("FEATS", "level", "functionals")
         try:
-            self.featlevel = self.featlevel.replace(
-                "lld", "LowLevelDescriptors"
-            )
-            self.featlevel = self.featlevel.replace(
-                "functionals", "Functionals"
-            )
-            self.feature_level = eval(
-                f"opensmile.FeatureLevel.{self.featlevel}"
-            )
+            self.featlevel = self.featlevel.replace("lld", "LowLevelDescriptors")
+            self.featlevel = self.featlevel.replace("functionals", "Functionals")
+            self.feature_level = eval(f"opensmile.FeatureLevel.{self.featlevel}")
         except AttributeError:
-            self.util.error(
-                f"something is wrong with feature level: {self.featlevel}"
-            )
+            self.util.error(f"something is wrong with feature level: {self.featlevel}")
 
     def extract(self):
         """Extract the features based on the initialized dataset or re-open them when found on disk."""
@@ -44,9 +34,7 @@ class Opensmileset(Featureset):
         )
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or not os.path.isfile(storage) or no_reuse:
-            self.util.debug(
-                "extracting openSmile features, this might take a while..."
-            )
+            self.util.debug("extracting openSmile features, this might take a while...")
             smile = opensmile.Smile(
                 feature_set=self.feature_set,
                 feature_level=self.feature_level,
@@ -85,9 +73,7 @@ class Opensmileset(Featureset):
             selected_features = ast.literal_eval(
                 glob_conf.config["FEATS"]["os.features"]
             )
-            self.util.debug(
-                f"selecting features from opensmile: {selected_features}"
-            )
+            self.util.debug(f"selecting features from opensmile: {selected_features}")
             sel_feats_df = pd.DataFrame()
             hit = False
             for feat in selected_features:

nkululeko/feat_extract/feats_oxbow.py

@@ -10,9 +10,10 @@ import opensmile
 class Openxbow(Featureset):
     """Class to extract openXBOW processed opensmile features (https://github.com/openXBOW)"""
 
-    def __init__(self, name, data_df, is_train=False):
+    def __init__(self, name, data_df, feats_type, is_train=False):
         """Constructor. is_train is needed to distinguish from test/dev sets, because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feats_type)
+        self.feats_types = feats_type
         self.is_train = is_train
 
     def extract(self):
@@ -21,11 +22,13 @@ class Openxbow(Featureset):
         self.feature_set = eval(f"opensmile.FeatureSet.{self.featset}")
         store = self.util.get_path("store")
         storage = f"{store}{self.name}_{self.featset}.pkl"
-        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        extract = self.util.config_val(
+            "FEATS", "needs_feature_extraction", False)
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or no_reuse or not os.path.isfile(storage):
             # extract smile features first
-            self.util.debug("extracting openSmile features, this might take a while...")
+            self.util.debug(
+                "extracting openSmile features, this might take a while...")
             smile = opensmile.Smile(
                 feature_set=self.feature_set,
                 feature_level=opensmile.FeatureLevel.LowLevelDescriptors,
@@ -48,7 +51,13 @@ class Openxbow(Featureset):
             # save the smile features
             smile_df.to_csv(lld_name, sep=";", header=False)
             # get the path of the xbow java jar file
-            xbow_path = self.util.config_val("FEATS", "xbow.model", "../openXBOW/")
+            xbow_path = self.util.config_val(
+                "FEATS", "xbow.model", "openXBOW")
+            # check if JAR file exist
+            if not os.path.isfile(f"{xbow_path}/openXBOW.jar"):
+                # download using wget if not exist and locate in xbow_path
+                os.system(
+                    f"git clone https://github.com/openXBOW/openXBOW")
             # get the size of the codebook
             size = self.util.config_val("FEATS", "size", 500)
             # get the number of assignements
@@ -57,16 +66,12 @@ class Openxbow(Featureset):
             if self.is_train:
                 # store the codebook
                 os.system(
-                    f"java -jar {xbow_path}openXBOW.jar -i"
-                    f" {lld_name} -standardizeInput -log                     -o"
-                    f" {xbow_name} -size {size} -a {assignments} -B"
-                    f" {codebook_name}"
+                    f"java -jar {xbow_path}/openXBOW.jar -i {lld_name} -standardizeInput -log -o {xbow_name} -size {size} -a {assignments} -B {codebook_name}"
                 )
             else:
                 # use the codebook
                 os.system(
-                    f"java -jar {xbow_path}openXBOW.jar -i {lld_name}          "
-                    f"           -o {xbow_name} -b {codebook_name}"
+                    f"java -jar {xbow_path}/openXBOW.jar -i {lld_name} -o {xbow_name} -b {codebook_name}"
                 )
             # read in the result from disk
             xbow_df = pd.read_csv(xbow_name, sep=";", header=None)

nkululeko/feat_extract/feats_praat.py

@@ -18,18 +18,20 @@ class PraatSet(Featureset):
 
     """
 
-    def __init__(self, name, data_df):
-        super().__init__(name, data_df)
+    def __init__(self, name, data_df, feats_type):
+        super().__init__(name, data_df, feats_type)
 
     def extract(self):
         """Extract the features based on the initialized dataset or re-open them when found on disk."""
         store = self.util.get_path("store")
         store_format = self.util.config_val("FEATS", "store_format", "pkl")
         storage = f"{store}{self.name}.{store_format}"
-        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        extract = self.util.config_val(
+            "FEATS", "needs_feature_extraction", False)
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or no_reuse or not os.path.isfile(storage):
-            self.util.debug("extracting Praat features, this might take a while...")
+            self.util.debug(
+                "extracting Praat features, this might take a while...")
             self.df = feinberg_praat.compute_features(self.data_df.index)
             self.df = self.df.set_index(self.data_df.index)
             for i, col in enumerate(self.df.columns):
@@ -52,7 +54,8 @@ class PraatSet(Featureset):
         self.df = self.df.astype(float)
 
     def extract_sample(self, signal, sr):
-        import audiofile, audformat
+        import audiofile
+        import audformat
 
         tmp_audio_names = ["praat_audio_tmp.wav"]
         audiofile.write(tmp_audio_names[0], signal, sr)

nkululeko/feat_extract/feats_spectra.py

@@ -4,6 +4,7 @@ feats_spectra.py
 Inspired by code from Su Lei
 
 """
+
 import os
 import torchaudio
 import torchaudio.transforms as T
@@ -23,9 +24,9 @@ import nkululeko.glob_conf as glob_conf
 
 
 class Spectraloader(Featureset):
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feat_type):
         """Constructor setting the name"""
-        Featureset.__init__(self, name, data_df)
+        super().__init__(name, data_df, feat_type)
         self.sampling_rate = SAMPLING_RATE
         self.num_bands = int(self.util.config_val("FEATS", "fft_nbands", "64"))
         self.win_dur = int(self.util.config_val("FEATS", "fft_win_dur", "25"))

nkululeko/feat_extract/feats_squim.py

@@ -30,9 +30,9 @@ from nkululeko.utils.util import Util
 class SquimSet(Featureset):
     """Class to predict SQUIM features"""
 
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feats_type):
         """Constructor. is_train is needed to distinguish from test/dev sets, because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feats_type)
         self.device = self.util.config_val("MODEL", "device", "cpu")
         self.model_initialized = False
 

nkululeko/feat_extract/feats_trill.py

@@ -1,4 +1,5 @@
 # feats_trill.py
+import tensorflow_hub as hub
 import os
 import tensorflow as tf
 from numpy.core.numeric import tensordot
@@ -11,7 +12,6 @@ from nkululeko.feat_extract.featureset import Featureset
 
 # Import TF 2.X and make sure we're running eager.
 assert tf.executing_eagerly()
-import tensorflow_hub as hub
 
 
 class TRILLset(Featureset):
@@ -20,7 +20,7 @@ class TRILLset(Featureset):
     """https://ai.googleblog.com/2020/06/improving-speech-representations-and.html"""
 
     # Initialization of the class
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feats_type):
         """
         Initialize the class with name, data and Util instance
         Also loads the model from hub
@@ -31,7 +31,7 @@ class TRILLset(Featureset):
         :type data_df: DataFrame
         :return: None
         """
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feats_type)
         # Load the model from the configured path
         model_path = self.util.config_val(
             "FEATS",
@@ -39,20 +39,24 @@ class TRILLset(Featureset):
             "https://tfhub.dev/google/nonsemantic-speech-benchmark/trill/3",
         )
         self.module = hub.load(model_path)
+        self.feats_type = feats_type
 
     def extract(self):
         store = self.util.get_path("store")
         storage = f"{store}{self.name}.pkl"
-        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        extract = self.util.config_val(
+            "FEATS", "needs_feature_extraction", False)
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or no_reuse or not os.path.isfile(storage):
-            self.util.debug("extracting TRILL embeddings, this might take a while...")
+            self.util.debug(
+                "extracting TRILL embeddings, this might take a while...")
             emb_series = pd.Series(index=self.data_df.index, dtype=object)
             length = len(self.data_df.index)
             for idx, file in enumerate(tqdm(self.data_df.index.get_level_values(0))):
                 emb = self.getEmbeddings(file)
                 emb_series[idx] = emb
-            self.df = pd.DataFrame(emb_series.values.tolist(), index=self.data_df.index)
+            self.df = pd.DataFrame(
+                emb_series.values.tolist(), index=self.data_df.index)
             self.df.to_pickle(storage)
             try:
                 glob_conf.config["DATA"]["needs_feature_extraction"] = "false"

nkululeko/feat_extract/feats_wav2vec2.py

@@ -1,5 +1,11 @@
-# feats_wav2vec2.py
-# feat_types example = wav2vec2-large-robust-ft-swbd-300h
+""" feats_wav2vec2.py
+feat_types example = [wav2vec2-large-robust-ft-swbd-300h,
+wav2vec2-xls-r-2b, wav2vec2-large, wav2vec2-large-xlsr-53, wav2vec2-base]
+
+Complete list: https://huggingface.co/facebook?search_models=wav2vec2
+Currently only supports wav2vec2
+"""
+
 import os
 from tqdm import tqdm
 import pandas as pd
@@ -16,11 +22,11 @@ class Wav2vec2(Featureset):
 
     def __init__(self, name, data_df, feat_type):
         """Constructor. is_train is needed to distinguish from test/dev sets, because they use the codebook from the training"""
-        super().__init__(name, data_df)
+        super().__init__(name, data_df, feat_type)
         cuda = "cuda" if torch.cuda.is_available() else "cpu"
         self.device = self.util.config_val("MODEL", "device", cuda)
         self.model_initialized = False
-        if feat_type == "wav2vec" or feat_type == "wav2vec2":
+        if feat_type == "wav2vec2":
             self.feat_type = "wav2vec2-large-robust-ft-swbd-300h"
         else:
             self.feat_type = feat_type
@@ -33,7 +39,8 @@ class Wav2vec2(Featureset):
         )
         config = transformers.AutoConfig.from_pretrained(model_path)
         layer_num = config.num_hidden_layers
-        hidden_layer = int(self.util.config_val("FEATS", "wav2vec2.layer", "0"))
+        hidden_layer = int(self.util.config_val(
+            "FEATS", "wav2vec2.layer", "0"))
         config.num_hidden_layers = layer_num - hidden_layer
         self.util.debug(f"using hidden layer #{config.num_hidden_layers}")
         self.processor = Wav2Vec2FeatureExtractor.from_pretrained(model_path)
@@ -48,7 +55,8 @@ class Wav2vec2(Featureset):
         """Extract the features or load them from disk if present."""
         store = self.util.get_path("store")
         storage = f"{store}{self.name}.pkl"
-        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        extract = self.util.config_val(
+            "FEATS", "needs_feature_extraction", False)
         no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
         if extract or no_reuse or not os.path.isfile(storage):
             if not self.model_initialized:
@@ -69,7 +77,8 @@ class Wav2vec2(Featureset):
                 emb = self.get_embeddings(signal, sampling_rate, file)
                 emb_series[idx] = emb
             # print(f"emb_series shape: {emb_series.shape}")
-            self.df = pd.DataFrame(emb_series.values.tolist(), index=self.data_df.index)
+            self.df = pd.DataFrame(
+                emb_series.values.tolist(), index=self.data_df.index)
             # print(f"df shape: {self.df.shape}")
             self.df.to_pickle(storage)
             try:

nkululeko/feat_extract/feats_wavlm.py

@@ -59,10 +59,7 @@ class Wavlm(Featureset):
                     frame_offset=int(start.total_seconds() * 16000),
                     num_frames=int((end - start).total_seconds() * 16000),
                 )
-                if sampling_rate != 16000:
-                    self.util.error(
-                        f"sampling rate should be 16000 but is {sampling_rate}"
-                    )
+                assert sampling_rate == 16000, f"sampling rate should be 16000 but is {sampling_rate}"
                 emb = self.get_embeddings(signal, sampling_rate, file)
                 emb_series.iloc[idx] = emb
             self.df = pd.DataFrame(emb_series.values.tolist(), index=self.data_df.index)

nkululeko/feat_extract/feats_whisper.py

@@ -0,0 +1,110 @@
+# feats_whisper.py
+import os
+
+import pandas as pd
+import torch
+from transformers import AutoFeatureExtractor
+from transformers import WhisperModel
+
+import audeer
+import audiofile
+
+from nkululeko.feat_extract.featureset import Featureset
+import nkululeko.glob_conf as glob_conf
+
+
+class Whisper(Featureset):
+    """Class to extract whisper embeddings."""
+
+    def __init__(self, name, data_df, feat_type):
+        super().__init__(name, data_df, feat_type)
+        cuda = "cuda" if torch.cuda.is_available() else "cpu"
+        self.device = self.util.config_val("MODEL", "device", cuda)
+        self.model_initialized = False
+        if feat_type == "whisper":
+            self.feat_type = "whisper-base"
+        else:
+            self.feat_type = feat_type
+
+    def init_model(self):
+        # load model
+        self.util.debug("loading whisper model...")
+        model_name = f"openai/{self.feat_type}"
+        self.model = WhisperModel.from_pretrained(model_name).to(self.device)
+        print(f"intialized Whisper model on {self.device}")
+        self.feature_extractor = AutoFeatureExtractor.from_pretrained(model_name)
+        self.model_initialized = True
+
+    def extract(self):
+        """Extract the features or load them from disk if present."""
+        store = self.util.get_path("store")
+        storage = f"{store}{self.name}.pkl"
+        extract = self.util.config_val("FEATS", "needs_feature_extraction", False)
+        no_reuse = eval(self.util.config_val("FEATS", "no_reuse", "False"))
+        if extract or no_reuse or not os.path.isfile(storage):
+            if not self.model_initialized:
+                self.init_model()
+            self.util.debug("extracting whisper embeddings, this might take a while...")
+            emb_series = []
+            for (file, start, end), _ in audeer.progress_bar(
+                self.data_df.iterrows(),
+                total=len(self.data_df),
+                desc=f"Running whisper on {len(self.data_df)} audiofiles",
+            ):
+                if end == pd.NaT:
+                    signal, sr = audiofile.read(file, offset=start)
+                else:
+                    signal, sr = audiofile.read(
+                        file, duration=end - start, offset=start
+                    )
+                emb = self.get_embeddings(signal, sr, file)
+                emb_series.append(emb)
+            # print(f"emb_series shape: {emb_series.shape}")
+            self.df = pd.DataFrame(emb_series, index=self.data_df.index)
+            # print(f"df shape: {self.df.shape}")
+            self.df.to_pickle(storage)
+            try:
+                glob_conf.config["DATA"]["needs_feature_extraction"] = "false"
+            except KeyError:
+                pass
+        else:
+            self.util.debug("reusing extracted wav2vec2 embeddings")
+            self.df = pd.read_pickle(storage)
+            if self.df.isnull().values.any():
+                nanrows = self.df.columns[self.df.isna().any()].tolist()
+                # print(nanrows)
+                self.util.error(
+                    f"got nan: {self.df.shape} {self.df.isnull().sum().sum()}"
+                )
+
+    def get_embeddings(self, signal, sampling_rate, file):
+        r"""Extract embeddings from raw audio signal."""
+        try:
+            with torch.no_grad():
+                embed_size = self.model.config.hidden_size
+                embed_columns = [f"whisper_{i}" for i in range(embed_size)]
+                inputs = self.feature_extractor(signal, sampling_rate=16000)[
+                    "input_features"
+                ][0]
+                inputs = torch.from_numpy(inputs).to(self.device).unsqueeze(0)
+                decoder_input_ids = (
+                    torch.tensor([[1, 1]]).to(self.device)
+                    * self.model.config.decoder_start_token_id
+                )
+                full_outputs = self.model(
+                    inputs,
+                    decoder_input_ids=decoder_input_ids,
+                    output_hidden_states=True,
+                )
+                outputs = full_outputs.encoder_last_hidden_state[0]
+                average_embeds = outputs.squeeze().mean(axis=0).cpu().detach().numpy()
+        except RuntimeError as re:
+            print(str(re))
+            self.util.error(f"couldn't extract file: {file}")
+        # print(f"y flattened shape: {y.ravel().shape}")
+        return average_embeds
+
+    def extract_sample(self, signal, sr):
+        self.init_model()
+        feats = self.get_embeddings(signal, sr, "no file")
+        return feats

nkululeko/feat_extract/featureset.py

@@ -7,13 +7,15 @@ import ast
 
 class Featureset:
     name = ""  # designation
-    df = None  # pandas dataframe to store the features (and indexed with the data from the sets)
+    df = None  # pandas dataframe to store the features
+    # (and indexed with the data from the sets)
     data_df = None  # dataframe to get audio paths
 
-    def __init__(self, name, data_df):
+    def __init__(self, name, data_df, feats_type):
         self.name = name
         self.data_df = data_df
         self.util = Util("featureset")
+        self.feats_types = feats_type
 
     def extract(self):
         pass
@@ -23,7 +25,8 @@ class Featureset:
         self.df = self.df[self.df.index.isin(self.data_df.index)]
         try:
             # use only some features
-            selected_features = ast.literal_eval(glob_conf.config["FEATS"]["features"])
+            selected_features = ast.literal_eval(
+                glob_conf.config["FEATS"]["features"])
             self.util.debug(f"selecting features: {selected_features}")
             sel_feats_df = pd.DataFrame()
             hit = False

nkululeko/feature_extractor.py

@@ -53,7 +53,7 @@ class FeatureExtractor:
         if feat_extractor_class is None:
             self.util.error(f"unknown feats_type: {feats_type}")
         return feat_extractor_class(
-            f"{store_name}_{self.feats_designation}", self.data_df
+            f"{store_name}_{self.feats_designation}", self.data_df, feats_type
         )
 
     def _get_feat_extractor_class(self, feats_type):
@@ -61,16 +61,27 @@ class FeatureExtractor:
             from nkululeko.feat_extract.feats_opensmile import Opensmileset
 
             return Opensmileset
+
         elif feats_type == "spectra":
             from nkululeko.feat_extract.feats_spectra import Spectraloader
 
             return Spectraloader
+
         elif feats_type == "trill":
             from nkululeko.feat_extract.feats_trill import TRILLset
 
             return TRILLset
-        elif feats_type.startswith(("wav2vec", "hubert", "wavlm", "spkrec")):
+
+        elif feats_type.startswith(
+            ("wav2vec2", "hubert", "wavlm", "spkrec", "whisper")
+        ):
             return self._get_feat_extractor_by_prefix(feats_type)
+
+        elif feats_type == "xbow":
+            from nkululeko.feat_extract.feats_oxbow import Openxbow
+
+            return Openxbow
+
         elif feats_type in (
             "audmodel",
             "auddim",
@@ -89,11 +100,11 @@ class FeatureExtractor:
             return None
 
     def _get_feat_extractor_by_prefix(self, feats_type):
-        prefix, _, ext = feats_type.partition("_")
+        prefix, _, ext = feats_type.partition("-")
         from importlib import import_module
 
         module = import_module(f"nkululeko.feat_extract.feats_{prefix.lower()}")
-        class_name = f"{prefix.capitalize()}{ext.capitalize()}set"
+        class_name = f"{prefix.capitalize()}"
         return getattr(module, class_name)
 
     def _get_feat_extractor_by_name(self, feats_type):

nkululeko/multidb.py

@@ -12,18 +12,15 @@ import numpy as np
 import pandas as pd
 import seaborn as sn
 
-import nkululeko.glob_conf as glob_conf
 from nkululeko.aug_train import doit as aug_train
-from nkululeko.experiment import Experiment
 from nkululeko.nkululeko import doit as nkulu
-from nkululeko.utils.util import Util
 
 
 def main(src_dir):
     parser = argparse.ArgumentParser(
-        description="Call the nkululeko MULTIDB framework.")
-    parser.add_argument("--config", default="exp.ini",
-                        help="The base configuration")
+        description="Call the nkululeko MULTIDB framework."
+    )
+    parser.add_argument("--config", default="exp.ini", help="The base configuration")
     args = parser.parse_args()
     if args.config is not None:
         config_file = args.config
@@ -58,8 +55,7 @@ def main(src_dir):
                 dataset = datasets[i]
                 print(f"running {dataset}")
                 if extra_trains:
-                    extra_trains_1 = extra_trains.removeprefix(
-                        "[").removesuffix("]")
+                    extra_trains_1 = extra_trains.removeprefix("[").removesuffix("]")
                     config["DATA"]["databases"] = f"['{dataset}', {extra_trains_1}]"
                     extra_trains_2 = ast.literal_eval(extra_trains)
                     for extra_train in extra_trains_2:
@@ -72,8 +68,7 @@ def main(src_dir):
                 test = datasets[j]
                 print(f"running train: {train}, test: {test}")
                 if extra_trains:
-                    extra_trains_1 = extra_trains.removeprefix(
-                        "[").removesuffix("]")
+                    extra_trains_1 = extra_trains.removeprefix("[").removesuffix("]")
                     config["DATA"][
                         "databases"
                     ] = f"['{train}', '{test}', {extra_trains_1}]"

nkululeko/nkuluflag.py

@@ -0,0 +1,95 @@
+import argparse
+import configparser
+import os
+import os.path
+
+from nkululeko.nkululeko import doit as nkulu
+
+
+def do_it(src_dir):
+    parser = argparse.ArgumentParser(description="Call the nkululeko framework.")
+    parser.add_argument("--config", help="The base configuration")
+    parser.add_argument("--data", help="The databases", nargs="*", action="append")
+    parser.add_argument(
+        "--label", nargs="*", help="The labels for the target", action="append"
+    )
+    parser.add_argument(
+        "--tuning_params", nargs="*", help="parameters to be tuned", action="append"
+    )
+    parser.add_argument(
+        "--layers",
+        nargs="*",
+        help="layer config for mlp, e.g. l1:128 ",
+        action="append",
+    )
+    parser.add_argument("--model", default="xgb", help="The model type")
+    parser.add_argument("--feat", default="['os']", help="The feature type")
+    parser.add_argument("--set", help="The opensmile set")
+    parser.add_argument("--with_os", help="To add os features")
+    parser.add_argument("--target", help="The target designation")
+    parser.add_argument("--epochs", help="The number of epochs")
+    parser.add_argument("--runs", help="The number of runs")
+    parser.add_argument("--learning_rate", help="The learning rate")
+    parser.add_argument("--drop", help="The dropout rate [0:1]")
+
+    args = parser.parse_args()
+
+    if args.config is not None:
+        config_file = args.config
+    else:
+        print("ERROR: need config file")
+        quit(-1)
+    # test if config is there
+    if not os.path.isfile(config_file):
+        print(f"ERROR: no such file {config_file}")
+
+    config = configparser.ConfigParser()
+    config.read(config_file)
+    # fill the config
+
+    if args.data is not None:
+        databases = []
+        for t in args.data:
+            databases.append(t[0])
+        print(f"got databases: {databases}")
+        config["DATA"]["databases"] = str(databases)
+    if args.label is not None:
+        labels = []
+        for label in args.label:
+            labels.append(label[0])
+        print(f"got labels: {labels}")
+        config["DATA"]["labels"] = str(labels)
+    if args.tuning_params is not None:
+        tuning_params = []
+        for tp in args.tuning_params:
+            tuning_params.append(tp[0])
+        config["MODEL"]["tuning_params"] = str(tuning_params)
+    if args.layers is not None:
+        config["MODEL"]["layers"] = args.layers[0][0]
+    if args.target is not None:
+        config["DATA"]["target"] = args.target
+    if args.epochs is not None:
+        config["EXP"]["epochs"] = args.epochs
+    if args.runs is not None:
+        config["EXP"]["runs"] = args.runs
+    if args.learning_rate is not None:
+        config["MODEL"]["learning_rate"] = args.learning_rate
+    if args.drop is not None:
+        config["MODEL"]["drop"] = args.drop
+    if args.model is not None:
+        config["MODEL"]["type"] = args.model
+    if args.feat is not None:
+        config["FEATS"]["type"] = f"['{args.feat}']"
+    if args.set is not None:
+        config["FEATS"]["set"] = args.set
+    tmp_config = "tmp.ini"
+    with open(tmp_config, "w") as tmp_file:
+        config.write(tmp_file)
+
+    result, last_epoch = nkulu(tmp_config)
+    return result, last_epoch
+
+
+if __name__ == "__main__":
+    cwd = os.path.dirname(os.path.abspath(__file__))
+    do_it(cwd)  # sys.argv[1])

nkululeko/nkululeko.py

@@ -1,12 +1,14 @@
 # nkululeko.py
 # Entry script to do a Nkululeko experiment
-import numpy as np
-import os.path
-import configparser
 import argparse
+import configparser
+import os.path
+
+import numpy as np
+
+from nkululeko.constants import VERSION
 import nkululeko.experiment as exp
 from nkululeko.utils.util import Util
-from nkululeko.constants import VERSION
 
 
 def doit(config_file):

{nkululeko-0.81.6.dist-info → nkululeko-0.82.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: nkululeko
-Version: 0.81.6
+Version: 0.82.0
 Summary: Machine learning audio prediction experiments based on templates
 Home-page: https://github.com/felixbur/nkululeko
 Author: Felix Burkhardt
@@ -42,6 +42,8 @@ Requires-Dist: umap-learn
 Requires-Dist: xgboost
 Requires-Dist: pylatex
 
+usage: nkuluflag.py [-h] [--config CONFIG] [--data [DATA ...]] [--label [LABEL ...]] [--tuning_params [TUNING_PARAMS ...]] [--layers [LAYERS ...]] [--model MODEL] [--feat FEAT] [--set SET]
+                    [--with_os WITH_OS] [--target TARGET] [--epochs EPOCHS] [--runs RUNS] [--learning_rate LEARNING_RATE] [--drop DROP]
 - [Overview](#overview)
   - [Confusion matrix](#confusion-matrix)
   - [Epoch progression](#epoch-progression)
@@ -203,6 +205,14 @@ All of them take *--config <my_config.ini>* as an argument.
 * **nkululeko.predict**: [predict features](http://blog.syntheticspeech.de/2023/08/16/nkululeko-how-to-predict-labels-for-your-data-from-existing-models-and-check-them/) like SNR, MOS, arousal/valence, age/gender, with DNN models
 * **nkululeko.segment**: [segment a database](http://blog.syntheticspeech.de/2023/07/14/nkululeko-segmenting-a-database/) based on VAD (voice activity detection)
 * **nkululeko.resample**: check on all [sampling rates and change](http://blog.syntheticspeech.de/2023/08/31/how-to-fix-different-sampling-rates-in-a-dataset-with-nkululeko/) to 16kHz 
+* **nkululeko.nkuluflag**: a convenient module to specify configuration parameters on the command-line.
+  * usage: nkuluflag.py [-h] [--config CONFIG] [--data [DATA ...]] [--label [LABEL ...]] [--tuning_params [TUNING_PARAMS ...]] [--layers [LAYERS ...]] [--model MODEL] [--feat FEAT] [--set SET]
+                    [--with_os WITH_OS] [--target TARGET] [--epochs EPOCHS] [--runs RUNS] [--learning_rate LEARNING_RATE] [--drop DROP]
+ 
+
+
+
+
 
 There's my [blog](http://blog.syntheticspeech.de/?s=nkululeko) with tutorials:
 * [Introduction](http://blog.syntheticspeech.de/2021/08/04/machine-learning-experiment-framework/)
@@ -323,6 +333,15 @@ F. Burkhardt, Johannes Wagner, Hagen Wierstorf, Florian Eyben and Björn Schulle
 Changelog
 =========
 
+Version 0.82.0
+--------------
+* added nkuluflag module
+
+Version 0.81.7
+--------------
+* bugfixes
+* added whisper feature extractor
+
 Version 0.81.6
 --------------
 * updated documentation

{nkululeko-0.81.6.dist-info → nkululeko-0.82.0.dist-info}/RECORD

@@ -2,20 +2,21 @@ nkululeko/__init__.py,sha256=62f8HiEzJ8rG2QlTFJXUCMpvuH3fKI33DoJSj33mscc,63
 nkululeko/aug_train.py,sha256=YhuZnS_WVWnun9G-M6g5n6rbRxoVREz6Zh7k6qprFNQ,3194
 nkululeko/augment.py,sha256=4MG0apTAG5RgkuJrYEjGgDdbodZWi_HweSPNI1JJ5QA,3051
 nkululeko/cacheddataset.py,sha256=lIJ6hUo5LoxSrzXtWV8mzwO7wRtUETWnOQ4ws2XfL1E,969
-nkululeko/constants.py,sha256=QwuK_rtVCEaN-oZZnh3s104ROC_O7hpEGY_ZMDKtRcw,39
+nkululeko/constants.py,sha256=pJeMUKDoX39rCCwLSX0poKEE1FLIa6YngxfdeUqE_T0,39
 nkululeko/demo.py,sha256=55kNFA2helMhOxD4yZuKg1JWDtlUUpxm-6uAnroIydI,3264
 nkululeko/demo_feats.py,sha256=sAeGFojhEj9WEDFtG3SzPBmyYJWLF2rkbpp65m8Ujo4,2025
 nkululeko/demo_predictor.py,sha256=-ggSHc3DXxRzjzcGB4qFBOMvKsfUdTkkde50BDrS9dA,4755
 nkululeko/experiment.py,sha256=CSEvQxK2_tzJyND5sUHQSc6MkRp1g6EVam8JX8txqps,29576
 nkululeko/explore.py,sha256=2wdoGRqldvsN1zCiWk0quSDgHHHUoF2UZOWQ1r-2OLM,2310
 nkululeko/export.py,sha256=mHeEAAmtZuxdyebLlbSzPrHSi9OMgJHbk35d3DTxRBc,4632
-nkululeko/feature_extractor.py,sha256=4UIvfh0m54286Y8q28aYBy-ojTFi3bWiActwBeAg_yE,3814
+nkululeko/feature_extractor.py,sha256=8mssYKmo4LclVI-hiLmJEDZ0ZPyDavFG2YwtXcrGzwM,3976
 nkululeko/file_checker.py,sha256=LoLnL8aHpW-axMQ46qbqrManTs5otG9ShpEZuz9iRSk,3474
 nkululeko/filter_data.py,sha256=w-X2mhKdYr5DxDIz50E5yzO6Jmzk4jjDBoXsgOOVtcA,7222
 nkululeko/glob_conf.py,sha256=iHiVSxDYgmYwdx6z0HuGUMSWrfZfufPHxHb60q2dLRY,453
 nkululeko/modelrunner.py,sha256=GuYsmUGSmJ0QxXxR8k0TZ47IDMtdGIMbm5nMq4Ix6tU,9335
-nkululeko/multidb.py,sha256=b49C6HjywWgs-GBZgOPufTknL9zBnl5IofSJjUrOIuY,5825
-nkululeko/nkululeko.py,sha256=Ty8cdusXUec9BHml8Gsp1r7DXuvIBMFXUckMpzILBnQ,1966
+nkululeko/multidb.py,sha256=fG3VukEWP1vreVN4gB1IRXxwwg4jLftsSEYtu0o1f78,5634
+nkululeko/nkuluflag.py,sha256=FCetTfgH69u4AwENgeCKVi3vBIR10Di67SfbupGQqfc,3354
+nkululeko/nkululeko.py,sha256=Kn3s2E3yyH8cJ7z6lkMxrnqtCxTu7-qfe9Zr_ONTD5g,1968
 nkululeko/plots.py,sha256=K88ZRPFGX_r03BT742H06Dde20xZYdltv7dxjgUiAFA,23025
 nkululeko/predict.py,sha256=sF091sSSLnEWcISx9ZcULLie3tY5XeFsQJd6b3vrxFg,2409
 nkululeko/reporter.py,sha256=mCy8er8z4e5hJ7XbOyy6BgZYZM6Lz-EKXHh4zlT0Zc8,12427
@@ -47,27 +48,28 @@ nkululeko/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nkululeko/data/dataset.py,sha256=JGzMD6HIvkFkYBekmbmslIKc5ADaCj06T-8gpqH_kFo,27650
 nkululeko/data/dataset_csv.py,sha256=v3lSjF23EVjoP460QOfhdcqbWAlBQWlBOuaYujZoS4s,3407
 nkululeko/feat_extract/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-nkululeko/feat_extract/feats_agender.py,sha256=w13UsYsUTzMe5B2Rkg0sfvBXrVBBo0-Ljo532zkDXgM,3043
+nkululeko/feat_extract/feats_agender.py,sha256=Qm69G4kqAyTVVk7wwRgrXlNwGaDMGRYyKGpuf0vOEgM,3113
 nkululeko/feat_extract/feats_agender_agender.py,sha256=5dA7YA-YGxODovMC7ynMk3bnpPjfs0ApvSfjqvoSZY0,3346
 nkululeko/feat_extract/feats_analyser.py,sha256=_5oz4y-NZCEBgfNP2GZ9WNqQR50Hbykm0TvDVomWP0U,11399
-nkululeko/feat_extract/feats_auddim.py,sha256=lMhKbEfnA0qKjRgMFx1xYpEhKCB8TZeFn8AJs_oqkvE,3083
-nkululeko/feat_extract/feats_audmodel.py,sha256=AO5BcrZ0QRD7--64WZq73KWvInM-8dVfgrLDQfq4sZ0,3109
-nkululeko/feat_extract/feats_clap.py,sha256=v82mbjdjGDSKUUBggttw7jW0oka22fWAmfUf-4VmaDU,3379
-nkululeko/feat_extract/feats_hubert.py,sha256=uL-9mgQHuGPQi1nuUaw6aNU9DscsO89uJAmBdmnCegM,5205
-nkululeko/feat_extract/feats_import.py,sha256=LMxFXSO2Ui7Jj2t9oBotqWe-je8rnDgkX4ay6StNrGk,1598
+nkululeko/feat_extract/feats_auddim.py,sha256=VlzKKXTXa5kjLgQBWyEFy-daIyU1SkOwCCOIhKsWCvE,3162
+nkululeko/feat_extract/feats_audmodel.py,sha256=VjBNgAoxsHJhwr6Kwt9CxX6SaCM4RK_OV-GU2W5-bhU,3187
+nkululeko/feat_extract/feats_clap.py,sha256=nR6eEIRdsMHcfmD1bNtt5WfDvkxKjvEbukSSrXHm-HU,3489
+nkululeko/feat_extract/feats_hubert.py,sha256=ebj5PJtj-DcMudtnBWeY3_d_9pPFeEDEtP6NMDXIZNI,5289
+nkululeko/feat_extract/feats_import.py,sha256=rj1p8lz19tCAC8hLzzZAwZ0M6gzwH3BzfabFUgal0yw,1622
 nkululeko/feat_extract/feats_mld.py,sha256=Vvu7GZOkn7Vda8eIOXqHjg78zegkFe3vTUaCXyVM0eA,2021
-nkululeko/feat_extract/feats_mos.py,sha256=SgsEw6_niVTUNO1tj92eUHBxKOeIcSHpYJBuHFvbJY8,4150
-nkululeko/feat_extract/feats_opensmile.py,sha256=yDRGSiUQV3K3oLxVqq8Cxj5bkc-RiLzDYbAGKC9I5vc,4140
-nkululeko/feat_extract/feats_oxbow.py,sha256=7W26NbEJnSckZzedolsIW1PJPSdCHhuh8YM19kOxaMA,4734
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 nkululeko/feat_extract/feats_snr.py,sha256=9dqZ-4RpK98iJEssM3ttozNd18LWlZYM_QVXvp5xDcs,2829
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 nkululeko/feat_extract/feats_spkrec.py,sha256=VK4ma3uWzM0YZStsgRTirfkbzjWIfRWSgsYI038QlRY,4803
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 nkululeko/feat_extract/feinberg_praat.py,sha256=EP9pMALjlKdiYInLQdrZ7MmE499Mq-ISRCgqbqL3Rxc,21304
 nkululeko/losses/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nkululeko/losses/loss_ccc.py,sha256=NOK0y0fxKUnU161B5geap6Fmn8QzoPl2MqtPiV8IuJE,976
@@ -102,8 +104,8 @@ nkululeko/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 nkululeko/utils/files.py,sha256=UiGAtZRWYjHSvlmPaTMtzyNNGE6qaLaxQkybctS7iRM,4021
 nkululeko/utils/stats.py,sha256=1yUq0FTOyqkU8TwUocJRYdJaqMU5SlOBBRUun9STo2M,2829
 nkululeko/utils/util.py,sha256=_Z6OMJ3f-8TdETW9eqJYY5hwNRS5XCt9azzRnqoTTZE,12330
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