niwrap-mrtrix 0.8.0__py3-none-any.whl

niwrap_mrtrix/mrtrix/__init__.py

@@ -0,0 +1,263 @@
+"""
+MRTrix3
+
+MRtrix3 provides a set of tools to perform various types of diffusion MRI
+analyses, from various forms of tractography through to next-generation
+group-level analyses. It is designed with consistency, performance, and
+stability in mind, and is freely available under an open-source license. It is
+developed and maintained by a team of experts in the field, fostering an active
+community of users from diverse backgrounds.
+
+Author: MRTrix3 Developers
+
+URL: https://www.mrtrix.org/
+"""
+# This file was auto generated by Styx.
+# Do not edit this file directly.
+
+from .afdconnectivity import *
+from .amp2response import *
+from .amp2sh import *
+from .connectome2tck import *
+from .connectomeedit import *
+from .connectomestats import *
+from .dcmedit import *
+from .dcminfo import *
+from .dirflip import *
+from .dirgen import *
+from .dirmerge import *
+from .dirorder import *
+from .dirsplit import *
+from .dirstat import *
+from .dwi2adc import *
+from .dwi2fod import *
+from .dwi2mask import *
+from .dwi2response import *
+from .dwi2tensor import *
+from .dwibiascorrect import *
+from .dwidenoise import *
+from .dwiextract import *
+from .dwigradcheck import *
+from .fixel2peaks import *
+from .fixel2sh import *
+from .fixel2tsf import *
+from .fixel2voxel import *
+from .fixelcfestats import *
+from .fixelconnectivity import *
+from .fixelconvert import *
+from .fixelcorrespondence import *
+from .fixelcrop import *
+from .fixelfilter import *
+from .fixelreorient import *
+from .fod2dec import *
+from .fod2fixel import *
+from .label2colour import *
+from .label2mesh import *
+from .labelconvert import *
+from .labelstats import *
+from .maskdump import *
+from .maskfilter import *
+from .mesh2voxel import *
+from .meshconvert import *
+from .meshfilter import *
+from .mraverageheader import *
+from .mrcalc import *
+from .mrcat import *
+from .mrcentroid import *
+from .mrcheckerboardmask import *
+from .mrclusterstats import *
+from .mrcolour import *
+from .mrconvert import *
+from .mrdegibbs import *
+from .mrdump import *
+from .mredit import *
+from .mrfilter import *
+from .mrgrid import *
+from .mrhistmatch import *
+from .mrhistogram import *
+from .mrinfo import *
+from .mrmath import *
+from .mrmetric import *
+from .mrregister import *
+from .mrstats import *
+from .mrthreshold import *
+from .mrtransform import *
+from .mtnormalise import *
+from .peaks2amp import *
+from .peaks2fixel import *
+from .responsemean import *
+from .sh2amp import *
+from .sh2peaks import *
+from .sh2power import *
+from .sh2response import *
+from .shbasis import *
+from .shconv import *
+from .tck2connectome import *
+from .tck2fixel import *
+from .tckconvert import *
+from .tckdfc import *
+from .tckedit import *
+from .tckgen import *
+from .tckglobal import *
+from .tckinfo import *
+from .tckmap import *
+from .tckresample import *
+from .tcksample import *
+from .tcksift import *
+from .tcksift2 import *
+from .tckstats import *
+from .tcktransform import *
+from .tensor2metric import *
+from .transformcalc import *
+from .transformcompose import *
+from .transformconvert import *
+from .tsfdivide import *
+from .tsfinfo import *
+from .tsfmult import *
+from .tsfsmooth import *
+from .tsfthreshold import *
+from .tsfvalidate import *
+from .v_5tt2gmwmi import *
+from .v_5tt2vis import *
+from .v_5ttcheck import *
+from .v_5ttedit import *
+from .v_5ttgen import *
+from .vectorstats import *
+from .voxel2fixel import *
+from .voxel2mesh import *
+from .warp2metric import *
+from .warpconvert import *
+from .warpcorrect import *
+from .warpinit import *
+from .warpinvert import *
+from styxdefs import Runner as _Runner
+
+
+def execute(
+    params: dict,
+    runner: _Runner | None = None,
+) -> None:
+    """
+    Run a command in this package dynamically from a params object.
+    
+    Args:
+        params: The parameters.
+        runner: Command runner.
+    """
+    return {
+        "mrtrix/5tt2gmwmi": v_5tt2gmwmi_execute,
+        "mrtrix/5tt2vis": v_5tt2vis_execute,
+        "mrtrix/5ttcheck": v_5ttcheck_execute,
+        "mrtrix/5ttedit": v_5ttedit_execute,
+        "mrtrix/5ttgen": v_5ttgen_execute,
+        "mrtrix/afdconnectivity": afdconnectivity_execute,
+        "mrtrix/amp2response": amp2response_execute,
+        "mrtrix/amp2sh": amp2sh_execute,
+        "mrtrix/connectome2tck": connectome2tck_execute,
+        "mrtrix/connectomeedit": connectomeedit_execute,
+        "mrtrix/connectomestats": connectomestats_execute,
+        "mrtrix/dcmedit": dcmedit_execute,
+        "mrtrix/dcminfo": dcminfo_execute,
+        "mrtrix/dirflip": dirflip_execute,
+        "mrtrix/dirgen": dirgen_execute,
+        "mrtrix/dirmerge": dirmerge_execute,
+        "mrtrix/dirorder": dirorder_execute,
+        "mrtrix/dirsplit": dirsplit_execute,
+        "mrtrix/dirstat": dirstat_execute,
+        "mrtrix/dwi2adc": dwi2adc_execute,
+        "mrtrix/dwi2fod": dwi2fod_execute,
+        "mrtrix/dwi2mask": dwi2mask_execute,
+        "mrtrix/dwi2response": dwi2response_execute,
+        "mrtrix/dwi2tensor": dwi2tensor_execute,
+        "mrtrix/dwibiascorrect": dwibiascorrect_execute,
+        "mrtrix/dwidenoise": dwidenoise_execute,
+        "mrtrix/dwiextract": dwiextract_execute,
+        "mrtrix/dwigradcheck": dwigradcheck_execute,
+        "mrtrix/fixel2peaks": fixel2peaks_execute,
+        "mrtrix/fixel2sh": fixel2sh_execute,
+        "mrtrix/fixel2tsf": fixel2tsf_execute,
+        "mrtrix/fixel2voxel": fixel2voxel_execute,
+        "mrtrix/fixelcfestats": fixelcfestats_execute,
+        "mrtrix/fixelconnectivity": fixelconnectivity_execute,
+        "mrtrix/fixelconvert": fixelconvert_execute,
+        "mrtrix/fixelcorrespondence": fixelcorrespondence_execute,
+        "mrtrix/fixelcrop": fixelcrop_execute,
+        "mrtrix/fixelfilter": fixelfilter_execute,
+        "mrtrix/fixelreorient": fixelreorient_execute,
+        "mrtrix/fod2dec": fod2dec_execute,
+        "mrtrix/fod2fixel": fod2fixel_execute,
+        "mrtrix/label2colour": label2colour_execute,
+        "mrtrix/label2mesh": label2mesh_execute,
+        "mrtrix/labelconvert": labelconvert_execute,
+        "mrtrix/labelstats": labelstats_execute,
+        "mrtrix/maskdump": maskdump_execute,
+        "mrtrix/maskfilter": maskfilter_execute,
+        "mrtrix/mesh2voxel": mesh2voxel_execute,
+        "mrtrix/meshconvert": meshconvert_execute,
+        "mrtrix/meshfilter": meshfilter_execute,
+        "mrtrix/mraverageheader": mraverageheader_execute,
+        "mrtrix/mrcalc": mrcalc_execute,
+        "mrtrix/mrcat": mrcat_execute,
+        "mrtrix/mrcentroid": mrcentroid_execute,
+        "mrtrix/mrcheckerboardmask": mrcheckerboardmask_execute,
+        "mrtrix/mrclusterstats": mrclusterstats_execute,
+        "mrtrix/mrcolour": mrcolour_execute,
+        "mrtrix/mrconvert": mrconvert_execute,
+        "mrtrix/mrdegibbs": mrdegibbs_execute,
+        "mrtrix/mrdump": mrdump_execute,
+        "mrtrix/mredit": mredit_execute,
+        "mrtrix/mrfilter": mrfilter_execute,
+        "mrtrix/mrgrid": mrgrid_execute,
+        "mrtrix/mrhistmatch": mrhistmatch_execute,
+        "mrtrix/mrhistogram": mrhistogram_execute,
+        "mrtrix/mrinfo": mrinfo_execute,
+        "mrtrix/mrmath": mrmath_execute,
+        "mrtrix/mrmetric": mrmetric_execute,
+        "mrtrix/mrregister": mrregister_execute,
+        "mrtrix/mrstats": mrstats_execute,
+        "mrtrix/mrthreshold": mrthreshold_execute,
+        "mrtrix/mrtransform": mrtransform_execute,
+        "mrtrix/mtnormalise": mtnormalise_execute,
+        "mrtrix/peaks2amp": peaks2amp_execute,
+        "mrtrix/peaks2fixel": peaks2fixel_execute,
+        "mrtrix/responsemean": responsemean_execute,
+        "mrtrix/sh2amp": sh2amp_execute,
+        "mrtrix/sh2peaks": sh2peaks_execute,
+        "mrtrix/sh2power": sh2power_execute,
+        "mrtrix/sh2response": sh2response_execute,
+        "mrtrix/shbasis": shbasis_execute,
+        "mrtrix/shconv": shconv_execute,
+        "mrtrix/tck2connectome": tck2connectome_execute,
+        "mrtrix/tck2fixel": tck2fixel_execute,
+        "mrtrix/tckconvert": tckconvert_execute,
+        "mrtrix/tckdfc": tckdfc_execute,
+        "mrtrix/tckedit": tckedit_execute,
+        "mrtrix/tckgen": tckgen_execute,
+        "mrtrix/tckglobal": tckglobal_execute,
+        "mrtrix/tckinfo": tckinfo_execute,
+        "mrtrix/tckmap": tckmap_execute,
+        "mrtrix/tckresample": tckresample_execute,
+        "mrtrix/tcksample": tcksample_execute,
+        "mrtrix/tcksift": tcksift_execute,
+        "mrtrix/tcksift2": tcksift2_execute,
+        "mrtrix/tckstats": tckstats_execute,
+        "mrtrix/tcktransform": tcktransform_execute,
+        "mrtrix/tensor2metric": tensor2metric_execute,
+        "mrtrix/transformcalc": transformcalc_execute,
+        "mrtrix/transformcompose": transformcompose_execute,
+        "mrtrix/transformconvert": transformconvert_execute,
+        "mrtrix/tsfdivide": tsfdivide_execute,
+        "mrtrix/tsfinfo": tsfinfo_execute,
+        "mrtrix/tsfmult": tsfmult_execute,
+        "mrtrix/tsfsmooth": tsfsmooth_execute,
+        "mrtrix/tsfthreshold": tsfthreshold_execute,
+        "mrtrix/tsfvalidate": tsfvalidate_execute,
+        "mrtrix/vectorstats": vectorstats_execute,
+        "mrtrix/voxel2fixel": voxel2fixel_execute,
+        "mrtrix/voxel2mesh": voxel2mesh_execute,
+        "mrtrix/warp2metric": warp2metric_execute,
+        "mrtrix/warpconvert": warpconvert_execute,
+        "mrtrix/warpcorrect": warpcorrect_execute,
+        "mrtrix/warpinit": warpinit_execute,
+        "mrtrix/warpinvert": warpinvert_execute,
+    }[params["@type"]](params, runner)