niwrap-mrtrix 0.6.1__py3-none-any.whl → 0.6.2__py3-none-any.whl
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- niwrap_mrtrix/mrtrix/afdconnectivity.py +2 -2
- niwrap_mrtrix/mrtrix/amp2response.py +2 -2
- niwrap_mrtrix/mrtrix/amp2sh.py +5 -5
- niwrap_mrtrix/mrtrix/connectome2tck.py +2 -2
- niwrap_mrtrix/mrtrix/connectomeedit.py +2 -2
- niwrap_mrtrix/mrtrix/connectomestats.py +3 -3
- niwrap_mrtrix/mrtrix/dcmedit.py +3 -3
- niwrap_mrtrix/mrtrix/dcminfo.py +3 -3
- niwrap_mrtrix/mrtrix/dirflip.py +2 -2
- niwrap_mrtrix/mrtrix/dirgen.py +2 -2
- niwrap_mrtrix/mrtrix/dirmerge.py +2 -2
- niwrap_mrtrix/mrtrix/dirorder.py +2 -2
- niwrap_mrtrix/mrtrix/dirsplit.py +2 -2
- niwrap_mrtrix/mrtrix/dirstat.py +3 -3
- niwrap_mrtrix/mrtrix/dwi2adc.py +3 -3
- niwrap_mrtrix/mrtrix/dwi2fod.py +6 -6
- niwrap_mrtrix/mrtrix/dwi2mask.py +3 -3
- niwrap_mrtrix/mrtrix/dwi2response.py +9 -9
- niwrap_mrtrix/mrtrix/dwi2tensor.py +3 -3
- niwrap_mrtrix/mrtrix/dwibiascorrect.py +3 -3
- niwrap_mrtrix/mrtrix/dwidenoise.py +2 -2
- niwrap_mrtrix/mrtrix/dwiextract.py +7 -7
- niwrap_mrtrix/mrtrix/dwigradcheck.py +3 -3
- niwrap_mrtrix/mrtrix/fixel2peaks.py +4 -4
- niwrap_mrtrix/mrtrix/fixel2sh.py +2 -2
- niwrap_mrtrix/mrtrix/fixel2tsf.py +2 -2
- niwrap_mrtrix/mrtrix/fixel2voxel.py +2 -2
- niwrap_mrtrix/mrtrix/fixelcfestats.py +5 -5
- niwrap_mrtrix/mrtrix/fixelconnectivity.py +2 -2
- niwrap_mrtrix/mrtrix/fixelconvert.py +6 -6
- niwrap_mrtrix/mrtrix/fixelcorrespondence.py +2 -2
- niwrap_mrtrix/mrtrix/fixelcrop.py +2 -2
- niwrap_mrtrix/mrtrix/fixelfilter.py +6 -6
- niwrap_mrtrix/mrtrix/fixelreorient.py +2 -2
- niwrap_mrtrix/mrtrix/fod2dec.py +2 -2
- niwrap_mrtrix/mrtrix/fod2fixel.py +2 -2
- niwrap_mrtrix/mrtrix/label2colour.py +2 -2
- niwrap_mrtrix/mrtrix/label2mesh.py +2 -2
- niwrap_mrtrix/mrtrix/labelconvert.py +2 -2
- niwrap_mrtrix/mrtrix/labelstats.py +2 -2
- niwrap_mrtrix/mrtrix/maskdump.py +2 -2
- niwrap_mrtrix/mrtrix/maskfilter.py +4 -4
- niwrap_mrtrix/mrtrix/mesh2voxel.py +2 -2
- niwrap_mrtrix/mrtrix/meshconvert.py +3 -3
- niwrap_mrtrix/mrtrix/meshfilter.py +2 -2
- niwrap_mrtrix/mrtrix/mraverageheader.py +2 -2
- niwrap_mrtrix/mrtrix/mrcalc.py +54 -54
- niwrap_mrtrix/mrtrix/mrcat.py +2 -2
- niwrap_mrtrix/mrtrix/mrcentroid.py +2 -2
- niwrap_mrtrix/mrtrix/mrcheckerboardmask.py +2 -2
- niwrap_mrtrix/mrtrix/mrclusterstats.py +3 -3
- niwrap_mrtrix/mrtrix/mrcolour.py +2 -2
- niwrap_mrtrix/mrtrix/mrconvert.py +14 -14
- niwrap_mrtrix/mrtrix/mrdegibbs.py +2 -2
- niwrap_mrtrix/mrtrix/mrdump.py +2 -2
- niwrap_mrtrix/mrtrix/mredit.py +5 -5
- niwrap_mrtrix/mrtrix/mrfilter.py +4 -4
- niwrap_mrtrix/mrtrix/mrgrid.py +5 -5
- niwrap_mrtrix/mrtrix/mrhistmatch.py +2 -2
- niwrap_mrtrix/mrtrix/mrhistogram.py +2 -2
- niwrap_mrtrix/mrtrix/mrinfo.py +6 -6
- niwrap_mrtrix/mrtrix/mrmath.py +2 -2
- niwrap_mrtrix/mrtrix/mrmetric.py +2 -2
- niwrap_mrtrix/mrtrix/mrregister.py +5 -5
- niwrap_mrtrix/mrtrix/mrstats.py +3 -3
- niwrap_mrtrix/mrtrix/mrthreshold.py +2 -2
- niwrap_mrtrix/mrtrix/mrtransform.py +6 -6
- niwrap_mrtrix/mrtrix/mtnormalise.py +3 -3
- niwrap_mrtrix/mrtrix/peaks2amp.py +2 -2
- niwrap_mrtrix/mrtrix/peaks2fixel.py +2 -2
- niwrap_mrtrix/mrtrix/responsemean.py +1 -1
- niwrap_mrtrix/mrtrix/sh2amp.py +5 -5
- niwrap_mrtrix/mrtrix/sh2peaks.py +3 -3
- niwrap_mrtrix/mrtrix/sh2power.py +2 -2
- niwrap_mrtrix/mrtrix/sh2response.py +2 -2
- niwrap_mrtrix/mrtrix/shbasis.py +2 -2
- niwrap_mrtrix/mrtrix/shconv.py +4 -4
- niwrap_mrtrix/mrtrix/tck2connectome.py +2 -2
- niwrap_mrtrix/mrtrix/tck2fixel.py +2 -2
- niwrap_mrtrix/mrtrix/tckconvert.py +4 -4
- niwrap_mrtrix/mrtrix/tckdfc.py +3 -3
- niwrap_mrtrix/mrtrix/tckedit.py +12 -12
- niwrap_mrtrix/mrtrix/tckgen.py +19 -19
- niwrap_mrtrix/mrtrix/tckglobal.py +3 -3
- niwrap_mrtrix/mrtrix/tckinfo.py +2 -2
- niwrap_mrtrix/mrtrix/tckmap.py +4 -4
- niwrap_mrtrix/mrtrix/tckresample.py +4 -4
- niwrap_mrtrix/mrtrix/tcksample.py +2 -2
- niwrap_mrtrix/mrtrix/tcksift.py +2 -2
- niwrap_mrtrix/mrtrix/tcksift2.py +2 -2
- niwrap_mrtrix/mrtrix/tckstats.py +3 -3
- niwrap_mrtrix/mrtrix/tcktransform.py +2 -2
- niwrap_mrtrix/mrtrix/tensor2metric.py +2 -2
- niwrap_mrtrix/mrtrix/transformcalc.py +2 -2
- niwrap_mrtrix/mrtrix/transformcompose.py +4 -4
- niwrap_mrtrix/mrtrix/transformconvert.py +2 -2
- niwrap_mrtrix/mrtrix/tsfdivide.py +2 -2
- niwrap_mrtrix/mrtrix/tsfinfo.py +2 -2
- niwrap_mrtrix/mrtrix/tsfmult.py +2 -2
- niwrap_mrtrix/mrtrix/tsfsmooth.py +2 -2
- niwrap_mrtrix/mrtrix/tsfthreshold.py +2 -2
- niwrap_mrtrix/mrtrix/tsfvalidate.py +2 -2
- niwrap_mrtrix/mrtrix/v_5tt2gmwmi.py +2 -2
- niwrap_mrtrix/mrtrix/v_5tt2vis.py +2 -2
- niwrap_mrtrix/mrtrix/v_5ttcheck.py +2 -2
- niwrap_mrtrix/mrtrix/v_5ttedit.py +2 -2
- niwrap_mrtrix/mrtrix/v_5ttgen.py +6 -6
- niwrap_mrtrix/mrtrix/vectorstats.py +3 -3
- niwrap_mrtrix/mrtrix/voxel2fixel.py +2 -2
- niwrap_mrtrix/mrtrix/voxel2mesh.py +2 -2
- niwrap_mrtrix/mrtrix/warp2metric.py +3 -3
- niwrap_mrtrix/mrtrix/warpconvert.py +2 -2
- niwrap_mrtrix/mrtrix/warpcorrect.py +2 -2
- niwrap_mrtrix/mrtrix/warpinit.py +2 -2
- niwrap_mrtrix/mrtrix/warpinvert.py +2 -2
- {niwrap_mrtrix-0.6.1.dist-info → niwrap_mrtrix-0.6.2.dist-info}/METADATA +1 -1
- niwrap_mrtrix-0.6.2.dist-info/RECORD +119 -0
- niwrap_mrtrix-0.6.1.dist-info/RECORD +0 -119
- {niwrap_mrtrix-0.6.1.dist-info → niwrap_mrtrix-0.6.2.dist-info}/WHEEL +0 -0
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@@ -14,14 +14,14 @@ AFDCONNECTIVITY_METADATA = Metadata(
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AfdconnectivityConfigParameters = typing.TypedDict('AfdconnectivityConfigParameters', {
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"__STYXTYPE__": typing.Literal["config"],
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AfdconnectivityParameters = typing.TypedDict('AfdconnectivityParameters', {
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"__STYXTYPE__": typing.Literal["afdconnectivity"],
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"wbft": typing.NotRequired[InputPathType | None],
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"afd_map": typing.NotRequired[str | None],
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"all_fixels": bool,
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@@ -14,14 +14,14 @@ AMP2RESPONSE_METADATA = Metadata(
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Amp2responseConfigParameters = typing.TypedDict('Amp2responseConfigParameters', {
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"__STYXTYPE__": typing.Literal["config"],
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Amp2responseParameters = typing.TypedDict('Amp2responseParameters', {
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"__STYXTYPE__": typing.Literal["amp2response"],
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"isotropic": bool,
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"noconstraint": bool,
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"directions": typing.NotRequired[InputPathType | None],
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niwrap_mrtrix/mrtrix/amp2sh.py
CHANGED
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@@ -14,33 +14,33 @@ AMP2SH_METADATA = Metadata(
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Amp2shFslgradParameters = typing.TypedDict('Amp2shFslgradParameters', {
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"__STYXTYPE__": typing.Literal["fslgrad"],
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Amp2shVariousStringParameters = typing.TypedDict('Amp2shVariousStringParameters', {
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"__STYXTYPE__": typing.Literal["VariousString"],
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Amp2shVariousFileParameters = typing.TypedDict('Amp2shVariousFileParameters', {
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Amp2shConfigParameters = typing.TypedDict('Amp2shConfigParameters', {
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Amp2shParameters = typing.TypedDict('Amp2shParameters', {
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"__STYXTYPE__": typing.Literal["amp2sh"],
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"directions": typing.NotRequired[InputPathType | None],
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Connectome2tckConfigParameters = typing.TypedDict('Connectome2tckConfigParameters', {
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Connectome2tckParameters = typing.TypedDict('Connectome2tckParameters', {
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ConnectomeeditConfigParameters = typing.TypedDict('ConnectomeeditConfigParameters', {
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ConnectomeeditParameters = typing.TypedDict('ConnectomeeditParameters', {
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ConnectomestatsColumnParameters = typing.TypedDict('ConnectomestatsColumnParameters', {
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ConnectomestatsConfigParameters = typing.TypedDict('ConnectomestatsConfigParameters', {
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ConnectomestatsParameters = typing.TypedDict('ConnectomestatsParameters', {
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niwrap_mrtrix/mrtrix/dcmedit.py
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DcmeditConfigParameters = typing.TypedDict('DcmeditConfigParameters', {
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DcmeditParameters = typing.TypedDict('DcmeditParameters', {
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niwrap_mrtrix/mrtrix/dcminfo.py
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DcminfoConfigParameters = typing.TypedDict('DcminfoConfigParameters', {
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DcminfoParameters = typing.TypedDict('DcminfoParameters', {
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niwrap_mrtrix/mrtrix/dirflip.py
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DirflipParameters = typing.TypedDict('DirflipParameters', {
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niwrap_mrtrix/mrtrix/dirgen.py
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DirgenParameters = typing.TypedDict('DirgenParameters', {
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"__STYXTYPE__": typing.Literal["dirgen"],
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"niter": typing.NotRequired[int | None],
|
|
27
27
|
"restarts": typing.NotRequired[int | None],
|
niwrap_mrtrix/mrtrix/dirmerge.py
CHANGED
|
@@ -14,14 +14,14 @@ DIRMERGE_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DirmergeConfigParameters = typing.TypedDict('DirmergeConfigParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
18
18
|
"key": str,
|
|
19
19
|
"value": str,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DirmergeParameters = typing.TypedDict('DirmergeParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["dirmerge"],
|
|
25
25
|
"unipolar_weight": typing.NotRequired[float | None],
|
|
26
26
|
"info": bool,
|
|
27
27
|
"quiet": bool,
|
niwrap_mrtrix/mrtrix/dirorder.py
CHANGED
|
@@ -14,14 +14,14 @@ DIRORDER_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DirorderConfigParameters = typing.TypedDict('DirorderConfigParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
18
18
|
"key": str,
|
|
19
19
|
"value": str,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DirorderParameters = typing.TypedDict('DirorderParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["dirorder"],
|
|
25
25
|
"cartesian": bool,
|
|
26
26
|
"info": bool,
|
|
27
27
|
"quiet": bool,
|
niwrap_mrtrix/mrtrix/dirsplit.py
CHANGED
|
@@ -14,14 +14,14 @@ DIRSPLIT_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DirsplitConfigParameters = typing.TypedDict('DirsplitConfigParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
18
18
|
"key": str,
|
|
19
19
|
"value": str,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DirsplitParameters = typing.TypedDict('DirsplitParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["dirsplit"],
|
|
25
25
|
"permutations": typing.NotRequired[int | None],
|
|
26
26
|
"cartesian": bool,
|
|
27
27
|
"info": bool,
|
niwrap_mrtrix/mrtrix/dirstat.py
CHANGED
|
@@ -14,21 +14,21 @@ DIRSTAT_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DirstatFslgradParameters = typing.TypedDict('DirstatFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DirstatConfigParameters = typing.TypedDict('DirstatConfigParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
25
25
|
"key": str,
|
|
26
26
|
"value": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
DirstatParameters = typing.TypedDict('DirstatParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dirstat"],
|
|
32
32
|
"output": typing.NotRequired[str | None],
|
|
33
33
|
"shells": typing.NotRequired[list[float] | None],
|
|
34
34
|
"grad": typing.NotRequired[InputPathType | None],
|
niwrap_mrtrix/mrtrix/dwi2adc.py
CHANGED
|
@@ -14,21 +14,21 @@ DWI2ADC_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
Dwi2adcFslgradParameters = typing.TypedDict('Dwi2adcFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
Dwi2adcConfigParameters = typing.TypedDict('Dwi2adcConfigParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
25
25
|
"key": str,
|
|
26
26
|
"value": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
Dwi2adcParameters = typing.TypedDict('Dwi2adcParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dwi2adc"],
|
|
32
32
|
"grad": typing.NotRequired[InputPathType | None],
|
|
33
33
|
"fslgrad": typing.NotRequired[Dwi2adcFslgradParameters | None],
|
|
34
34
|
"info": bool,
|
niwrap_mrtrix/mrtrix/dwi2fod.py
CHANGED
|
@@ -14,40 +14,40 @@ DWI2FOD_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
Dwi2fodFslgradParameters = typing.TypedDict('Dwi2fodFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
Dwi2fodVariousStringParameters = typing.TypedDict('Dwi2fodVariousStringParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["VariousString"],
|
|
25
25
|
"obj": str,
|
|
26
26
|
})
|
|
27
27
|
|
|
28
28
|
|
|
29
29
|
Dwi2fodVariousFileParameters = typing.TypedDict('Dwi2fodVariousFileParameters', {
|
|
30
|
-
"
|
|
30
|
+
"__STYXTYPE__": typing.Literal["VariousFile"],
|
|
31
31
|
"obj": InputPathType,
|
|
32
32
|
})
|
|
33
33
|
|
|
34
34
|
|
|
35
35
|
Dwi2fodConfigParameters = typing.TypedDict('Dwi2fodConfigParameters', {
|
|
36
|
-
"
|
|
36
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
37
37
|
"key": str,
|
|
38
38
|
"value": str,
|
|
39
39
|
})
|
|
40
40
|
|
|
41
41
|
|
|
42
42
|
Dwi2fodResponseOdfParameters = typing.TypedDict('Dwi2fodResponseOdfParameters', {
|
|
43
|
-
"
|
|
43
|
+
"__STYXTYPE__": typing.Literal["response_odf"],
|
|
44
44
|
"response": InputPathType,
|
|
45
45
|
"odf": str,
|
|
46
46
|
})
|
|
47
47
|
|
|
48
48
|
|
|
49
49
|
Dwi2fodParameters = typing.TypedDict('Dwi2fodParameters', {
|
|
50
|
-
"
|
|
50
|
+
"__STYXTYPE__": typing.Literal["dwi2fod"],
|
|
51
51
|
"grad": typing.NotRequired[InputPathType | None],
|
|
52
52
|
"fslgrad": typing.NotRequired[Dwi2fodFslgradParameters | None],
|
|
53
53
|
"shells": typing.NotRequired[list[float] | None],
|
niwrap_mrtrix/mrtrix/dwi2mask.py
CHANGED
|
@@ -14,21 +14,21 @@ DWI2MASK_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
Dwi2maskFslgradParameters = typing.TypedDict('Dwi2maskFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
Dwi2maskConfigParameters = typing.TypedDict('Dwi2maskConfigParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
25
25
|
"key": str,
|
|
26
26
|
"value": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
Dwi2maskParameters = typing.TypedDict('Dwi2maskParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dwi2mask"],
|
|
32
32
|
"clean_scale": typing.NotRequired[int | None],
|
|
33
33
|
"grad": typing.NotRequired[InputPathType | None],
|
|
34
34
|
"fslgrad": typing.NotRequired[Dwi2maskFslgradParameters | None],
|
|
@@ -14,7 +14,7 @@ DWI2RESPONSE_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
Dwi2responseDhollanderParameters = typing.TypedDict('Dwi2responseDhollanderParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["dhollander"],
|
|
18
18
|
"input": InputPathType,
|
|
19
19
|
"out_sfwm": str,
|
|
20
20
|
"out_gm": str,
|
|
@@ -29,7 +29,7 @@ Dwi2responseDhollanderParameters = typing.TypedDict('Dwi2responseDhollanderParam
|
|
|
29
29
|
|
|
30
30
|
|
|
31
31
|
Dwi2responseFaParameters = typing.TypedDict('Dwi2responseFaParameters', {
|
|
32
|
-
"
|
|
32
|
+
"__STYXTYPE__": typing.Literal["fa"],
|
|
33
33
|
"input": InputPathType,
|
|
34
34
|
"output": str,
|
|
35
35
|
"erode": typing.NotRequired[int | None],
|
|
@@ -39,7 +39,7 @@ Dwi2responseFaParameters = typing.TypedDict('Dwi2responseFaParameters', {
|
|
|
39
39
|
|
|
40
40
|
|
|
41
41
|
Dwi2responseManualParameters = typing.TypedDict('Dwi2responseManualParameters', {
|
|
42
|
-
"
|
|
42
|
+
"__STYXTYPE__": typing.Literal["manual"],
|
|
43
43
|
"input": InputPathType,
|
|
44
44
|
"in_voxels": InputPathType,
|
|
45
45
|
"output": str,
|
|
@@ -48,7 +48,7 @@ Dwi2responseManualParameters = typing.TypedDict('Dwi2responseManualParameters',
|
|
|
48
48
|
|
|
49
49
|
|
|
50
50
|
Dwi2responseMsmt5ttParameters = typing.TypedDict('Dwi2responseMsmt5ttParameters', {
|
|
51
|
-
"
|
|
51
|
+
"__STYXTYPE__": typing.Literal["msmt_5tt"],
|
|
52
52
|
"input": InputPathType,
|
|
53
53
|
"in_5tt": InputPathType,
|
|
54
54
|
"out_wm": str,
|
|
@@ -63,7 +63,7 @@ Dwi2responseMsmt5ttParameters = typing.TypedDict('Dwi2responseMsmt5ttParameters'
|
|
|
63
63
|
|
|
64
64
|
|
|
65
65
|
Dwi2responseTaxParameters = typing.TypedDict('Dwi2responseTaxParameters', {
|
|
66
|
-
"
|
|
66
|
+
"__STYXTYPE__": typing.Literal["tax"],
|
|
67
67
|
"input": InputPathType,
|
|
68
68
|
"output": str,
|
|
69
69
|
"peak_ratio": typing.NotRequired[float | None],
|
|
@@ -73,7 +73,7 @@ Dwi2responseTaxParameters = typing.TypedDict('Dwi2responseTaxParameters', {
|
|
|
73
73
|
|
|
74
74
|
|
|
75
75
|
Dwi2responseTournierParameters = typing.TypedDict('Dwi2responseTournierParameters', {
|
|
76
|
-
"
|
|
76
|
+
"__STYXTYPE__": typing.Literal["tournier"],
|
|
77
77
|
"input": InputPathType,
|
|
78
78
|
"output": str,
|
|
79
79
|
"number": typing.NotRequired[int | None],
|
|
@@ -84,21 +84,21 @@ Dwi2responseTournierParameters = typing.TypedDict('Dwi2responseTournierParameter
|
|
|
84
84
|
|
|
85
85
|
|
|
86
86
|
Dwi2responseFslgradParameters = typing.TypedDict('Dwi2responseFslgradParameters', {
|
|
87
|
-
"
|
|
87
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
88
88
|
"bvecs": InputPathType,
|
|
89
89
|
"bvals": InputPathType,
|
|
90
90
|
})
|
|
91
91
|
|
|
92
92
|
|
|
93
93
|
Dwi2responseConfigParameters = typing.TypedDict('Dwi2responseConfigParameters', {
|
|
94
|
-
"
|
|
94
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
95
95
|
"key": str,
|
|
96
96
|
"value": str,
|
|
97
97
|
})
|
|
98
98
|
|
|
99
99
|
|
|
100
100
|
Dwi2responseParameters = typing.TypedDict('Dwi2responseParameters', {
|
|
101
|
-
"
|
|
101
|
+
"__STYXTYPE__": typing.Literal["dwi2response"],
|
|
102
102
|
"algorithm": typing.Union[Dwi2responseDhollanderParameters, Dwi2responseFaParameters, Dwi2responseManualParameters, Dwi2responseMsmt5ttParameters, Dwi2responseTaxParameters, Dwi2responseTournierParameters],
|
|
103
103
|
"grad": typing.NotRequired[InputPathType | None],
|
|
104
104
|
"fslgrad": typing.NotRequired[Dwi2responseFslgradParameters | None],
|
|
@@ -14,21 +14,21 @@ DWI2TENSOR_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
Dwi2tensorFslgradParameters = typing.TypedDict('Dwi2tensorFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
Dwi2tensorConfigParameters = typing.TypedDict('Dwi2tensorConfigParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
25
25
|
"key": str,
|
|
26
26
|
"value": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
Dwi2tensorParameters = typing.TypedDict('Dwi2tensorParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dwi2tensor"],
|
|
32
32
|
"ols": bool,
|
|
33
33
|
"mask": typing.NotRequired[InputPathType | None],
|
|
34
34
|
"b0": typing.NotRequired[str | None],
|
|
@@ -14,21 +14,21 @@ DWIBIASCORRECT_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DwibiascorrectFslgradParameters = typing.TypedDict('DwibiascorrectFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DwibiascorrectConfigParameters = typing.TypedDict('DwibiascorrectConfigParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
25
25
|
"key": str,
|
|
26
26
|
"value": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
DwibiascorrectParameters = typing.TypedDict('DwibiascorrectParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dwibiascorrect"],
|
|
32
32
|
"algorithm": str,
|
|
33
33
|
"input_image": InputPathType,
|
|
34
34
|
"output_image": str,
|
|
@@ -14,14 +14,14 @@ DWIDENOISE_METADATA = Metadata(
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
DwidenoiseConfigParameters = typing.TypedDict('DwidenoiseConfigParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
18
18
|
"key": str,
|
|
19
19
|
"value": str,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DwidenoiseParameters = typing.TypedDict('DwidenoiseParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["dwidenoise"],
|
|
25
25
|
"mask": typing.NotRequired[InputPathType | None],
|
|
26
26
|
"extent": typing.NotRequired[list[int] | None],
|
|
27
27
|
"noise": typing.NotRequired[str | None],
|
|
@@ -14,47 +14,47 @@ DWIEXTRACT_METADATA = Metadata(
|
|
|
14
14
|
|
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15
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DwiextractFslgradParameters = typing.TypedDict('DwiextractFslgradParameters', {
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17
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-
"
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17
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+
"__STYXTYPE__": typing.Literal["fslgrad"],
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"bvecs": InputPathType,
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"bvals": InputPathType,
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})
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DwiextractExportGradFslParameters = typing.TypedDict('DwiextractExportGradFslParameters', {
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24
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"
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24
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+
"__STYXTYPE__": typing.Literal["export_grad_fsl"],
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"bvecs_path": str,
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"bvals_path": str,
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})
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DwiextractImportPeEddyParameters = typing.TypedDict('DwiextractImportPeEddyParameters', {
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31
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-
"
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31
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+
"__STYXTYPE__": typing.Literal["import_pe_eddy"],
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"config": InputPathType,
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"indices": InputPathType,
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})
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DwiextractVariousStringParameters = typing.TypedDict('DwiextractVariousStringParameters', {
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38
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"
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+
"__STYXTYPE__": typing.Literal["VariousString"],
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"obj": str,
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})
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DwiextractVariousFileParameters = typing.TypedDict('DwiextractVariousFileParameters', {
|
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44
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-
"
|
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44
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+
"__STYXTYPE__": typing.Literal["VariousFile"],
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"obj": InputPathType,
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})
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47
47
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48
48
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49
49
|
DwiextractConfigParameters = typing.TypedDict('DwiextractConfigParameters', {
|
|
50
|
-
"
|
|
50
|
+
"__STYXTYPE__": typing.Literal["config"],
|
|
51
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"key": str,
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"value": str,
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})
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56
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|
DwiextractParameters = typing.TypedDict('DwiextractParameters', {
|
|
57
|
-
"
|
|
57
|
+
"__STYXTYPE__": typing.Literal["dwiextract"],
|
|
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58
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"bzero": bool,
|
|
59
59
|
"no_bzero": bool,
|
|
60
60
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"singleshell": bool,
|
|
@@ -14,21 +14,21 @@ DWIGRADCHECK_METADATA = Metadata(
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|
|
14
14
|
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|
15
15
|
|
|
16
16
|
DwigradcheckFslgradParameters = typing.TypedDict('DwigradcheckFslgradParameters', {
|
|
17
|
-
"
|
|
17
|
+
"__STYXTYPE__": typing.Literal["fslgrad"],
|
|
18
18
|
"bvecs": InputPathType,
|
|
19
19
|
"bvals": InputPathType,
|
|
20
20
|
})
|
|
21
21
|
|
|
22
22
|
|
|
23
23
|
DwigradcheckExportGradFslParameters = typing.TypedDict('DwigradcheckExportGradFslParameters', {
|
|
24
|
-
"
|
|
24
|
+
"__STYXTYPE__": typing.Literal["export_grad_fsl"],
|
|
25
25
|
"bvecs_path": str,
|
|
26
26
|
"bvals_path": str,
|
|
27
27
|
})
|
|
28
28
|
|
|
29
29
|
|
|
30
30
|
DwigradcheckParameters = typing.TypedDict('DwigradcheckParameters', {
|
|
31
|
-
"
|
|
31
|
+
"__STYXTYPE__": typing.Literal["dwigradcheck"],
|
|
32
32
|
"input_image": InputPathType,
|
|
33
33
|
"grad": typing.NotRequired[InputPathType | None],
|
|
34
34
|
"fslgrad": typing.NotRequired[DwigradcheckFslgradParameters | None],
|